data_Y4V
#

_chem_comp.id                                   Y4V
_chem_comp.name                                 "(1R,2S)-2-((S)-2-(((adamantan-1-ylmethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H41 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-03
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       543.673
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y4V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y4V  C02  C1   C  0  1  N  N  N  -21.469  -3.730   1.855   2.235   0.692  -0.733  C02  Y4V   1  
Y4V  C04  C2   C  0  1  N  N  S  -21.271  -5.533   3.561  -0.179   0.599  -1.050  C04  Y4V   2  
Y4V  C05  C3   C  0  1  N  N  N  -21.916  -6.946   3.857  -0.340   0.756  -2.563  C05  Y4V   3  
Y4V  C06  C4   C  0  1  N  N  N  -23.477  -6.874   3.950  -1.639   1.506  -2.863  C06  Y4V   4  
Y4V  C07  C5   C  0  1  N  N  N  -23.936  -5.953   5.102  -1.544   2.930  -2.313  C07  Y4V   5  
Y4V  C08  C6   C  0  1  N  N  N  -24.104  -8.282   4.108  -1.861   1.557  -4.376  C08  Y4V   6  
Y4V  C09  C7   C  0  1  N  N  N  -19.732  -5.646   3.593  -1.299  -0.252  -0.511  C09  Y4V   7  
Y4V  C11  C8   C  0  1  N  N  S  -17.569  -5.421   4.882  -3.565  -0.505   0.350  C11  Y4V   8  
Y4V  C12  C9   C  0  1  N  N  N  -17.012  -3.946   5.022  -4.567   0.425   1.037  C12  Y4V   9  
Y4V  C13  C10  C  0  1  N  N  S  -17.107  -3.219   3.680  -3.894   1.109   2.229  C13  Y4V  10  
Y4V  C14  C11  C  0  1  N  N  N  -16.631  -1.781   3.800  -2.804   2.045   1.757  C14  Y4V  11  
Y4V  C16  C12  C  0  1  N  N  N  -15.528  -2.672   1.977  -4.619   3.394   2.287  C16  Y4V  12  
Y4V  C17  C13  C  0  1  N  N  N  -16.120  -3.837   2.662  -4.897   2.032   2.960  C17  Y4V  13  
Y4V  C19  C14  C  0  1  N  N  R  -17.276  -6.262   6.190  -4.284  -1.330  -0.719  C19  Y4V  14  
Y4V  C23  C15  C  0  1  N  N  N  -21.125  -2.242  -0.032   4.575   0.976  -0.357  C23  Y4V  15  
Y4V  C24  C16  C  0  1  N  N  N  -21.823  -2.013  -1.439   5.792   0.163   0.088  C24  Y4V  16  
Y4V  C25  C17  C  0  1  N  N  N  -21.302  -3.044  -2.431   6.009  -1.001  -0.881  C25  Y4V  17  
Y4V  C26  C18  C  0  1  N  N  N  -21.937  -2.855  -3.821   7.225  -1.815  -0.436  C26  Y4V  18  
Y4V  C27  C19  C  0  1  N  N  N  -21.743  -1.418  -4.303   6.986  -2.362   0.973  C27  Y4V  19  
Y4V  C28  C20  C  0  1  N  N  N  -22.311  -0.390  -3.301   6.769  -1.198   1.942  C28  Y4V  20  
Y4V  C29  C21  C  0  1  N  N  N  -21.675  -0.566  -1.916   5.552  -0.384   1.497  C29  Y4V  21  
Y4V  C30  C22  C  0  1  N  N  N  -23.829  -0.646  -3.115   8.008  -0.301   1.947  C30  Y4V  22  
Y4V  C31  C23  C  0  1  N  N  N  -24.097  -2.116  -2.668   8.248   0.246   0.539  C31  Y4V  23  
Y4V  C32  C24  C  0  1  N  N  N  -23.370  -2.312  -1.302   7.031   1.060   0.094  C32  Y4V  24  
Y4V  C33  C25  C  0  1  N  N  N  -23.463  -3.097  -3.694   8.465  -0.918  -0.430  C33  Y4V  25  
Y4V  N03  N1   N  0  1  N  N  N  -21.760  -5.036   2.264   1.106  -0.042  -0.759  N03  Y4V  26  
Y4V  N10  N2   N  0  1  N  N  N  -19.026  -5.321   4.739  -2.509   0.294  -0.278  N10  Y4V  27  
Y4V  N15  N3   N  0  1  N  N  N  -15.703  -1.438   2.806  -3.235   3.317   1.804  N15  Y4V  28  
Y4V  O01  O1   O  0  1  N  N  N  -20.776  -2.973   2.563   2.203   1.868  -1.038  O01  Y4V  29  
Y4V  O18  O2   O  0  1  N  N  N  -16.992  -0.924   4.643  -1.702   1.698   1.389  O18  Y4V  30  
Y4V  O20  O3   O  0  1  N  N  N  -15.846  -6.446   6.301  -4.984  -0.454  -1.606  O20  Y4V  31  
Y4V  O21  O4   O  0  1  N  N  N  -19.105  -6.047   2.566  -1.112  -1.430  -0.287  O21  Y4V  32  
Y4V  O22  O5   O  0  1  N  N  N  -21.934  -3.233   0.649   3.399   0.125  -0.362  O22  Y4V  33  
Y4V  H1   H1   H  0  1  N  N  N  -21.586  -4.843   4.358  -0.210   1.581  -0.577  H1   Y4V  34  
Y4V  H2   H2   H  0  1  N  N  N  -21.641  -7.638   3.047   0.505   1.318  -2.962  H2   Y4V  35  
Y4V  H3   H3   H  0  1  N  N  N  -21.521  -7.323   4.812  -0.373  -0.229  -3.029  H3   Y4V  36  
Y4V  H4   H4   H  0  1  N  N  N  -23.847  -6.445   3.007  -2.474   0.989  -2.391  H4   Y4V  37  
Y4V  H5   H5   H  0  1  N  N  N  -25.035  -5.927   5.136  -2.496   3.441  -2.461  H5   Y4V  38  
Y4V  H6   H6   H  0  1  N  N  N  -23.549  -6.339   6.056  -1.314   2.894  -1.248  H6   Y4V  39  
Y4V  H7   H7   H  0  1  N  N  N  -23.551  -4.936   4.934  -0.756   3.471  -2.837  H7   Y4V  40  
Y4V  H8   H8   H  0  1  N  N  N  -25.199  -8.192   4.170  -1.928   0.543  -4.768  H8   Y4V  41  
Y4V  H9   H9   H  0  1  N  N  N  -23.836  -8.902   3.240  -2.787   2.092  -4.590  H9   Y4V  42  
Y4V  H10  H10  H  0  1  N  N  N  -23.723  -8.752   5.026  -1.026   2.074  -4.848  H10  Y4V  43  
Y4V  H11  H11  H  0  1  N  N  N  -17.111  -5.912   4.011  -3.124  -1.173   1.089  H11  Y4V  44  
Y4V  H12  H12  H  0  1  N  N  N  -15.960  -3.983   5.342  -4.906   1.181   0.329  H12  Y4V  45  
Y4V  H13  H13  H  0  1  N  N  N  -17.605  -3.403   5.773  -5.421  -0.155   1.385  H13  Y4V  46  
Y4V  H14  H14  H  0  1  N  N  N  -18.135  -3.258   3.290  -3.488   0.365   2.915  H14  Y4V  47  
Y4V  H15  H15  H  0  1  N  N  N  -14.455  -2.852   1.816  -5.302   3.548   1.451  H15  Y4V  48  
Y4V  H16  H16  H  0  1  N  N  N  -16.025  -2.531   1.006  -4.721   4.201   3.012  H16  Y4V  49  
Y4V  H17  H17  H  0  1  N  N  N  -16.651  -4.482   1.946  -5.923   1.711   2.783  H17  Y4V  50  
Y4V  H18  H18  H  0  1  N  N  N  -15.344  -4.422   3.177  -4.682   2.073   4.028  H18  Y4V  51  
Y4V  H19  H19  H  0  1  N  N  N  -17.609  -5.646   7.039  -3.554  -1.910  -1.282  H19  Y4V  52  
Y4V  S1   S1   S  0  1  N  Y  N  -17.773  -7.241   6.122  -5.465  -2.453   0.078  S1   Y4V  53  
Y4V  H21  H21  H  0  1  N  N  N  -20.098  -2.613  -0.169   4.420   1.806   0.334  H21  Y4V  54  
Y4V  H22  H22  H  0  1  N  N  N  -21.103  -1.304   0.542   4.746   1.366  -1.360  H22  Y4V  55  
Y4V  H23  H23  H  0  1  N  N  N  -21.544  -4.051  -2.061   5.126  -1.640  -0.885  H23  Y4V  56  
Y4V  H24  H24  H  0  1  N  N  N  -20.211  -2.937  -2.518   6.180  -0.612  -1.884  H24  Y4V  57  
Y4V  H25  H25  H  0  1  N  N  N  -21.500  -3.564  -4.540   7.380  -2.645  -1.126  H25  Y4V  58  
Y4V  H26  H26  H  0  1  N  N  N  -20.667  -1.229  -4.434   6.103  -3.001   0.969  H26  Y4V  59  
Y4V  H27  H27  H  0  1  N  N  N  -22.257  -1.295  -5.268   7.852  -2.942   1.290  H27  Y4V  60  
Y4V  H28  H28  H  0  1  N  N  N  -22.143   0.632  -3.671   6.598  -1.588   2.945  H28  Y4V  61  
Y4V  H29  H29  H  0  1  N  N  N  -20.606  -0.311  -1.973   5.397   0.445   2.187  H29  Y4V  62  
Y4V  H30  H30  H  0  1  N  N  N  -22.174   0.104  -1.201   4.669  -1.023   1.493  H30  Y4V  63  
Y4V  H31  H31  H  0  1  N  N  N  -24.218   0.040  -2.348   7.853   0.528   2.638  H31  Y4V  64  
Y4V  H32  H32  H  0  1  N  N  N  -24.345  -0.460  -4.069   8.875  -0.881   2.264  H32  Y4V  65  
Y4V  H33  H33  H  0  1  N  N  N  -25.176  -2.301  -2.565   9.131   0.885   0.543  H33  Y4V  66  
Y4V  H34  H34  H  0  1  N  N  N  -23.805  -1.626  -0.560   7.202   1.449  -0.910  H34  Y4V  67  
Y4V  H35  H35  H  0  1  N  N  N  -23.508  -3.350  -0.966   6.876   1.889   0.784  H35  Y4V  68  
Y4V  H36  H36  H  0  1  N  N  N  -23.935  -2.945  -4.676   9.332  -1.498  -0.113  H36  Y4V  69  
Y4V  H37  H37  H  0  1  N  N  N  -23.637  -4.130  -3.359   8.636  -0.529  -1.434  H37  Y4V  70  
Y4V  H38  H38  H  0  1  N  N  N  -22.302  -5.634   1.673   1.143  -0.996  -0.585  H38  Y4V  71  
Y4V  H39  H39  H  0  1  N  N  N  -19.547  -4.994   5.527  -2.681   1.216  -0.526  H39  Y4V  72  
Y4V  H40  H40  H  0  1  N  N  N  -15.253  -0.554   2.678  -2.700   4.086   1.553  H40  Y4V  73  
Y4V  H41  H41  H  0  1  N  N  N  -15.651  -6.950   7.082  -4.413   0.176  -2.068  H41  Y4V  74  
Y4V  O2   O6   O  0  1  N  Y  N        ?       ?       ?  -5.904  -3.446  -0.839  O2   Y4V  75  
Y4V  O3   O7   O  0  1  N  Y  N        ?       ?       ?  -4.632  -3.221   1.094  O3   Y4V  76  
Y4V  O1   O8   O  0  1  N  Y  N        ?       ?       ?  -6.394  -1.722   0.867  O1   Y4V  77  
Y4V  H20  H20  H  0  1  N  Y  N        ?       ?       ?  -5.136  -3.870   1.605  H20  Y4V  78  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y4V  C27  C26  SING  N  N   1  
Y4V  C27  C28  SING  N  N   2  
Y4V  C26  C33  SING  N  N   3  
Y4V  C26  C25  SING  N  N   4  
Y4V  C33  C31  SING  N  N   5  
Y4V  C28  C30  SING  N  N   6  
Y4V  C28  C29  SING  N  N   7  
Y4V  C30  C31  SING  N  N   8  
Y4V  C31  C32  SING  N  N   9  
Y4V  C25  C24  SING  N  N  10  
Y4V  C29  C24  SING  N  N  11  
Y4V  C24  C32  SING  N  N  12  
Y4V  C24  C23  SING  N  N  13  
Y4V  C23  O22  SING  N  N  14  
Y4V  O22  C02  SING  N  N  15  
Y4V  C02  N03  SING  N  N  16  
Y4V  C02  O01  DOUB  N  N  17  
Y4V  C16  C17  SING  N  N  18  
Y4V  C16  N15  SING  N  N  19  
Y4V  N03  C04  SING  N  N  20  
Y4V  O21  C09  DOUB  N  N  21  
Y4V  C17  C13  SING  N  N  22  
Y4V  N15  C14  SING  N  N  23  
Y4V  C04  C09  SING  N  N  24  
Y4V  C04  C05  SING  N  N  25  
Y4V  C09  N10  SING  N  N  26  
Y4V  C13  C14  SING  N  N  27  
Y4V  C13  C12  SING  N  N  28  
Y4V  C14  O18  DOUB  N  N  29  
Y4V  C05  C06  SING  N  N  30  
Y4V  C06  C08  SING  N  N  31  
Y4V  C06  C07  SING  N  N  32  
Y4V  N10  C11  SING  N  N  33  
Y4V  C11  C12  SING  N  N  34  
Y4V  C11  C19  SING  N  N  35  
Y4V  C19  O20  SING  N  N  36  
Y4V  C04  H1   SING  N  N  37  
Y4V  C05  H2   SING  N  N  38  
Y4V  C05  H3   SING  N  N  39  
Y4V  C06  H4   SING  N  N  40  
Y4V  C07  H5   SING  N  N  41  
Y4V  C07  H6   SING  N  N  42  
Y4V  C07  H7   SING  N  N  43  
Y4V  C08  H8   SING  N  N  44  
Y4V  C08  H9   SING  N  N  45  
Y4V  C08  H10  SING  N  N  46  
Y4V  C11  H11  SING  N  N  47  
Y4V  C12  H12  SING  N  N  48  
Y4V  C12  H13  SING  N  N  49  
Y4V  C13  H14  SING  N  N  50  
Y4V  C16  H15  SING  N  N  51  
Y4V  C16  H16  SING  N  N  52  
Y4V  C17  H17  SING  N  N  53  
Y4V  C17  H18  SING  N  N  54  
Y4V  C19  H19  SING  N  N  55  
Y4V  C19  S1   SING  N  N  56  
Y4V  C23  H21  SING  N  N  57  
Y4V  C23  H22  SING  N  N  58  
Y4V  C25  H23  SING  N  N  59  
Y4V  C25  H24  SING  N  N  60  
Y4V  C26  H25  SING  N  N  61  
Y4V  C27  H26  SING  N  N  62  
Y4V  C27  H27  SING  N  N  63  
Y4V  C28  H28  SING  N  N  64  
Y4V  C29  H29  SING  N  N  65  
Y4V  C29  H30  SING  N  N  66  
Y4V  C30  H31  SING  N  N  67  
Y4V  C30  H32  SING  N  N  68  
Y4V  C31  H33  SING  N  N  69  
Y4V  C32  H34  SING  N  N  70  
Y4V  C32  H35  SING  N  N  71  
Y4V  C33  H36  SING  N  N  72  
Y4V  C33  H37  SING  N  N  73  
Y4V  N03  H38  SING  N  N  74  
Y4V  N10  H39  SING  N  N  75  
Y4V  N15  H40  SING  N  N  76  
Y4V  O20  H41  SING  N  N  77  
Y4V  S1   O2   DOUB  N  N  78  
Y4V  S1   O3   SING  N  N  79  
Y4V  S1   O1   DOUB  N  N  80  
Y4V  O3   H20  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y4V  SMILES            ACDLabs               12.01  "C(NC(C(NC(CC1C(=O)NCC1)CO)=O)CC(C)C)(=O)OCC24CC3CC(CC(C2)C3)C4"  
Y4V  InChI             InChI                 1.03   "InChI=1S/C25H41N3O8S/c1-14(2)5-19(22(30)27-20(23(31)37(33,34)35)9-18-3-4-26-21(18)29)28-24(32)36-13-25-10-15-6-16(11-25)8-17(7-15)12-25/h14-20,23,31H,3-13H2,1-2H3,(H,26,29)(H,27,30)(H,28,32)(H,33,34,35)/t15-,16+,17-,18-,19-,20-,23+,25-/m0/s1"  
Y4V  InChIKey          InChI                 1.03   AFONNBAHWVWJGI-CLEZYGTASA-N  
Y4V  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OCC12CC3CC(CC(C3)C1)C2)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@H](O)[S](O)(=O)=O"  
Y4V  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OCC12CC3CC(CC(C3)C1)C2)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O"  
Y4V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCC23CC4CC(C2)CC(C4)C3"  
Y4V  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC23CC4CC(C2)CC(C4)C3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y4V  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-({[(3s,5s,7s)-tricyclo[3.3.1.1~3,7~]decan-1-yl]methoxy}carbonyl)-L-leucinamide"  
Y4V  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},2~{S})-2-[[(2~{S})-2-(1-adamantylmethoxycarbonylamino)-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y4V  "Create component"    2021-02-03  RCSB  
Y4V  "Other modification"  2021-02-09  RCSB  
Y4V  "Modify name"         2021-02-09  RCSB  
Y4V  "Initial release"     2021-02-17  RCSB  
##
