data_Y51
#

_chem_comp.id                                   Y51
_chem_comp.name                                 "(1R,2S)-2-((S)-2-(((((1S,2S,4S)-bicyclo[2.2.1]hept-5-en-2-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H35 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-03
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       501.594
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y51
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y51  C21  C1   C  0  1  N  N  S   8.240  28.654  24.426   8.060   0.451  -0.906  C21  Y51   1  
Y51  C14  C2   C  0  1  N  N  R   8.854  18.376  28.571  -3.731   1.185  -1.612  C14  Y51   2  
Y51  C13  C3   C  0  1  N  N  N   6.418  21.836  27.257  -3.866  -3.120  -0.941  C13  Y51   3  
Y51  C12  C4   C  0  1  N  N  N   5.441  22.631  26.408  -4.416  -4.447  -0.372  C12  Y51   4  
Y51  C16  C5   C  0  1  N  N  S   8.880  26.390  24.988   6.173  -1.103  -0.843  C16  Y51   5  
Y51  C15  C6   C  0  1  N  N  N   9.047  25.729  26.339   4.996  -0.966   0.125  C15  Y51   6  
Y51  C1   C7   C  0  1  N  N  N  10.578  23.912  26.354   2.675  -0.410   0.098  C1   Y51   7  
Y51  C10  C8   C  0  1  N  N  S   7.235  21.042  26.243  -4.046  -2.163   0.260  C10  Y51   8  
Y51  C11  C9   C  0  1  N  N  N   6.342  21.002  25.017  -5.167  -2.783   1.064  C11  Y51   9  
Y51  C17  C10  C  0  1  N  N  S  10.042  27.358  24.598   7.449  -1.596  -0.089  C17  Y51  10  
Y51  C18  C11  C  0  1  N  N  N   9.353  28.162  23.493   8.573  -1.030  -1.032  C18  Y51  11  
Y51  C19  C12  C  0  1  N  N  N  10.129  28.397  25.673   7.584  -0.624   1.090  C19  Y51  12  
Y51  C2   C13  C  0  1  N  N  S  11.630  22.090  27.552   0.304   0.132   0.248  C2   Y51  13  
Y51  C20  C14  C  0  1  N  N  N   9.069  29.176  25.561   7.937   0.555   0.619  C20  Y51  14  
Y51  C22  C15  C  0  1  N  N  N   7.645  27.303  24.905   6.587   0.283  -1.396  C22  Y51  15  
Y51  C3   C16  C  0  1  N  N  N  12.780  21.857  28.529   0.266   1.548   0.827  C3   Y51  16  
Y51  C4   C17  C  0  1  N  N  N  14.153  22.314  28.038   1.404   1.716   1.836  C4   Y51  17  
Y51  C5   C18  C  0  1  N  N  N  15.217  22.073  29.102   1.444   3.166   2.322  C5   Y51  18  
Y51  C6   C19  C  0  1  N  N  N  14.530  21.621  26.740   1.172   0.785   3.027  C6   Y51  19  
Y51  C7   C20  C  0  1  N  N  N  10.322  21.536  28.123  -0.887  -0.075  -0.652  C7   Y51  20  
Y51  C8   C21  C  0  1  N  N  S   8.616  19.755  27.974  -3.293  -0.160  -1.030  C8   Y51  21  
Y51  C9   C22  C  0  1  N  N  N   7.689  19.680  26.758  -4.442  -0.766  -0.223  C9   Y51  22  
Y51  N1   N1   N  0  1  N  N  N  11.522  23.500  27.216   1.536  -0.047  -0.525  N1   Y51  23  
Y51  N2   N2   N  0  1  N  N  N   9.889  20.381  27.609  -2.135   0.041  -0.155  N2   Y51  24  
Y51  N3   N3   N  0  1  N  N  N   5.299  21.788  25.228  -5.356  -4.060   0.686  N3   Y51  25  
Y51  O1   O1   O  0  1  N  N  N   9.918  23.172  25.664   2.680  -0.590   1.300  O1   Y51  26  
Y51  O2   O2   O  0  1  N  N  N   6.566  20.366  23.968  -5.803  -2.212   1.926  O2   Y51  27  
Y51  O3   O3   O  0  1  N  N  N   9.593  18.440  29.784  -2.701   1.696  -2.460  O3   Y51  28  
Y51  O4   O4   O  0  1  N  N  N   9.713  22.153  28.994  -0.723  -0.344  -1.823  O4   Y51  29  
Y51  O5   O5   O  0  1  N  N  N  10.405  25.238  26.457   3.807  -0.574  -0.612  O5   Y51  30  
Y51  H1   H1   H  0  1  N  N  N   7.520  29.357  23.982   8.647   1.227  -1.397  H1   Y51  31  
Y51  S1   S1   S  0  1  N  Y  N   9.369  17.759  27.865  -4.039   2.357  -0.262  S1   Y51  32  
Y51  H3   H3   H  0  1  N  N  N   7.857  17.986  28.826  -4.645   1.050  -2.191  H3   Y51  33  
Y51  H4   H4   H  0  1  N  N  N   5.882  21.161  27.940  -2.814  -3.216  -1.209  H4   Y51  34  
Y51  H6   H6   H  0  1  N  N  N   5.852  23.617  26.146  -4.934  -5.005  -1.151  H6   Y51  35  
Y51  H7   H7   H  0  1  N  N  N   4.478  22.760  26.924  -3.604  -5.044   0.043  H7   Y51  36  
Y51  H8   H8   H  0  1  N  N  N   8.799  25.613  24.214   5.922  -1.784  -1.656  H8   Y51  37  
Y51  H9   H9   H  0  1  N  N  N   8.849  26.461  27.135   4.819  -1.922   0.618  H9   Y51  38  
Y51  H10  H10  H  0  1  N  N  N   8.342  24.890  26.429   5.227  -0.208   0.873  H10  Y51  39  
Y51  H11  H11  H  0  1  N  N  N   8.132  21.628  25.994  -3.131  -2.116   0.851  H11  Y51  40  
Y51  H12  H12  H  0  1  N  N  N  10.985  26.868  24.315   7.487  -2.658   0.153  H12  Y51  41  
Y51  H13  H13  H  0  1  N  N  N   8.984  27.539  22.665   8.495  -1.413  -2.050  H13  Y51  42  
Y51  H14  H14  H  0  1  N  N  N   9.976  28.974  23.091   9.572  -1.163  -0.618  H14  Y51  43  
Y51  H15  H15  H  0  1  N  N  N  10.916  28.492  26.407   7.419  -0.866   2.130  H15  Y51  44  
Y51  H17  H17  H  0  1  N  N  N  11.855  21.528  26.633   0.276  -0.594   1.060  H17  Y51  45  
Y51  H18  H18  H  0  1  N  N  N   8.840  30.034  26.176   8.109   1.444   1.208  H18  Y51  46  
Y51  H20  H20  H  0  1  N  N  N   7.165  27.409  25.889   5.953   1.066  -0.980  H20  Y51  47  
Y51  H21  H21  H  0  1  N  N  N   6.914  26.914  24.181   6.542   0.289  -2.485  H21  Y51  48  
Y51  H22  H22  H  0  1  N  N  N  12.553  22.400  29.458   0.384   2.273   0.022  H22  Y51  49  
Y51  H23  H23  H  0  1  N  N  N  12.835  20.779  28.739  -0.689   1.710   1.327  H23  Y51  50  
Y51  H24  H24  H  0  1  N  N  N  14.102  23.396  27.846   2.352   1.467   1.359  H24  Y51  51  
Y51  H25  H25  H  0  1  N  N  N  14.927  22.582  30.033   0.496   3.416   2.799  H25  Y51  52  
Y51  H26  H26  H  0  1  N  N  N  15.311  20.993  29.288   2.254   3.287   3.041  H26  Y51  53  
Y51  H27  H27  H  0  1  N  N  N  16.181  22.470  28.752   1.609   3.830   1.474  H27  Y51  54  
Y51  H28  H28  H  0  1  N  N  N  15.521  21.969  26.412   1.144  -0.248   2.681  H28  Y51  55  
Y51  H29  H29  H  0  1  N  N  N  14.558  20.533  26.900   1.983   0.905   3.746  H29  Y51  56  
Y51  H30  H30  H  0  1  N  N  N  13.784  21.859  25.968   0.224   1.034   3.504  H30  Y51  57  
Y51  H31  H31  H  0  1  N  N  N   8.123  20.375  28.737  -3.022  -0.836  -1.841  H31  Y51  58  
Y51  H32  H32  H  0  1  N  N  N   6.797  19.100  27.038  -5.330  -0.837  -0.852  H32  Y51  59  
Y51  H33  H33  H  0  1  N  N  N   8.223  19.163  25.947  -4.657  -0.131   0.637  H33  Y51  60  
Y51  H34  H34  H  0  1  N  N  N  12.149  24.162  27.626   1.533   0.097  -1.484  H34  Y51  61  
Y51  H35  H35  H  0  1  N  N  N  10.467  19.918  26.937  -2.266   0.257   0.781  H35  Y51  62  
Y51  H36  H36  H  0  1  N  N  N   4.493  21.802  24.636  -6.028  -4.649   1.064  H36  Y51  63  
Y51  H37  H37  H  0  1  N  N  N   9.721  17.562  30.124  -1.857   1.841  -2.011  H37  Y51  64  
Y51  O6   O6   O  0  1  N  Y  N       ?       ?       ?  -5.185   1.969   0.484  O6   Y51  65  
Y51  O7   O7   O  0  1  N  Y  N       ?       ?       ?  -2.823   2.698   0.389  O7   Y51  66  
Y51  O8   O8   O  0  1  N  Y  N       ?       ?       ?  -4.464   3.640  -0.962  O8   Y51  67  
Y51  H2   H2   H  0  1  N  N  N   7.066  22.508  27.839  -4.456  -2.788  -1.796  H2   Y51  68  
Y51  H5   H5   H  0  1  N  Y  N       ?       ?       ?  -4.665   4.369  -0.359  H5   Y51  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y51  C18  C21  SING  N  N   1  
Y51  C18  C17  SING  N  N   2  
Y51  O2   C11  DOUB  N  N   3  
Y51  C21  C22  SING  N  N   4  
Y51  C21  C20  SING  N  N   5  
Y51  C17  C16  SING  N  N   6  
Y51  C17  C19  SING  N  N   7  
Y51  C22  C16  SING  N  N   8  
Y51  C16  C15  SING  N  N   9  
Y51  C11  N3   SING  N  N  10  
Y51  C11  C10  SING  N  N  11  
Y51  N3   C12  SING  N  N  12  
Y51  C20  C19  DOUB  N  N  13  
Y51  O1   C1   DOUB  N  N  14  
Y51  C10  C9   SING  N  N  15  
Y51  C10  C13  SING  N  N  16  
Y51  C15  O5   SING  N  N  17  
Y51  C1   O5   SING  N  N  18  
Y51  C1   N1   SING  N  N  19  
Y51  C12  C13  SING  N  N  20  
Y51  C6   C4   SING  N  N  21  
Y51  C9   C8   SING  N  N  22  
Y51  N1   C2   SING  N  N  23  
Y51  C2   C7   SING  N  N  24  
Y51  C2   C3   SING  N  N  25  
Y51  N2   C8   SING  N  N  26  
Y51  N2   C7   SING  N  N  27  
Y51  C8   C14  SING  N  N  28  
Y51  C4   C3   SING  N  N  29  
Y51  C4   C5   SING  N  N  30  
Y51  C7   O4   DOUB  N  N  31  
Y51  C14  O3   SING  N  N  32  
Y51  C21  H1   SING  N  N  33  
Y51  C14  S1   SING  N  N  34  
Y51  C14  H3   SING  N  N  35  
Y51  C13  H4   SING  N  N  36  
Y51  C12  H6   SING  N  N  37  
Y51  C12  H7   SING  N  N  38  
Y51  C16  H8   SING  N  N  39  
Y51  C15  H9   SING  N  N  40  
Y51  C15  H10  SING  N  N  41  
Y51  C10  H11  SING  N  N  42  
Y51  C17  H12  SING  N  N  43  
Y51  C18  H13  SING  N  N  44  
Y51  C18  H14  SING  N  N  45  
Y51  C19  H15  SING  N  N  46  
Y51  C2   H17  SING  N  N  47  
Y51  C20  H18  SING  N  N  48  
Y51  C22  H20  SING  N  N  49  
Y51  C22  H21  SING  N  N  50  
Y51  C3   H22  SING  N  N  51  
Y51  C3   H23  SING  N  N  52  
Y51  C4   H24  SING  N  N  53  
Y51  C5   H25  SING  N  N  54  
Y51  C5   H26  SING  N  N  55  
Y51  C5   H27  SING  N  N  56  
Y51  C6   H28  SING  N  N  57  
Y51  C6   H29  SING  N  N  58  
Y51  C6   H30  SING  N  N  59  
Y51  C8   H31  SING  N  N  60  
Y51  C9   H32  SING  N  N  61  
Y51  C9   H33  SING  N  N  62  
Y51  N1   H34  SING  N  N  63  
Y51  N2   H35  SING  N  N  64  
Y51  N3   H36  SING  N  N  65  
Y51  O3   H37  SING  N  N  66  
Y51  S1   O6   DOUB  N  N  67  
Y51  S1   O7   DOUB  N  N  68  
Y51  S1   O8   SING  N  N  69  
Y51  C13  H2   SING  N  N  70  
Y51  O8   H5   SING  N  N  71  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y51  InChI             InChI                 1.03   "InChI=1S/C22H35N3O8S/c1-12(2)7-17(25-22(29)33-11-16-9-13-3-4-14(16)8-13)20(27)24-18(21(28)34(30,31)32)10-15-5-6-23-19(15)26/h3-4,12-18,21,28H,5-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,14+,15-,16+,17-,18-,21+/m0/s1"  
Y51  InChIKey          InChI                 1.03   WZJYVJHLXCYWFV-NFFJHMNLSA-N  
Y51  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2C[C@H]1C=C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"  
Y51  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2C[CH]1C=C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Y51  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@@H]3C[C@H]2C=C3"  
Y51  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC2C=C3"  
#
_pdbx_chem_comp_identifier.comp_id          Y51
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-2-[[(1~{S},2~{S},4~{S})-2-bicyclo[2.2.1]hept-5-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y51  "Create component"    2021-02-03  RCSB  
Y51  "Other modification"  2021-02-08  RCSB  
Y51  "Modify name"         2021-02-09  RCSB  
Y51  "Initial release"     2021-02-17  RCSB  
##
