data_Y57
#

_chem_comp.id                                   Y57
_chem_comp.name                                 "N~6~-(2-phenylethyl)-N~6~-propan-2-yl-L-lysine"
_chem_comp.type                                 "L-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C17 H28 N2 O2"
_chem_comp.mon_nstd_parent_comp_id              LYS
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-04
_chem_comp.pdbx_modified_date                   2021-12-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       292.416
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y57
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y57  C10  C1   C  0  1  N  N  N   4.588  -0.689  32.151   0.702   2.604   0.047  C10  Y57   1  
Y57  N    N1   N  0  1  N  N  N  -0.024   1.728  37.324  -4.615  -2.311   0.093  N    Y57   2  
Y57  CA   C2   C  0  1  N  N  S  -0.284   1.835  35.894  -4.903  -0.910   0.424  CA   Y57   3  
Y57  C    C3   C  0  1  N  N  N  -1.138   0.654  35.445  -6.272  -0.543  -0.089  C    Y57   4  
Y57  O    O1   O  0  1  N  N  N  -0.731  -0.504  35.592  -6.788  -1.204  -0.959  O    Y57   5  
Y57  CB   C4   C  0  1  N  N  N   1.031   1.880  35.118  -3.855  -0.005  -0.228  CB   Y57   6  
Y57  CG   C5   C  0  1  N  N  N   0.878   2.156  33.635  -2.482  -0.292   0.384  CG   Y57   7  
Y57  CD   C6   C  0  1  N  N  N   2.228   2.178  32.937  -1.434   0.612  -0.269  CD   Y57   8  
Y57  CE   C7   C  0  1  N  N  N   2.854   0.793  32.890  -0.062   0.325   0.343  CE   Y57   9  
Y57  C01  C8   C  0  1  Y  N  N   4.146   2.626  28.801   4.095  -0.879  -0.299  C01  Y57  10  
Y57  C02  C9   C  0  1  Y  N  N   2.858   2.709  28.297   4.406  -1.646   0.808  C02  Y57  11  
Y57  C03  C10  C  0  1  Y  N  N   2.653   3.024  26.963   5.724  -1.967   1.078  C03  Y57  12  
Y57  C04  C11  C  0  1  Y  N  N   3.735   3.257  26.127   6.729  -1.521   0.241  C04  Y57  13  
Y57  C05  C12  C  0  1  Y  N  N   5.022   3.177  26.630   6.417  -0.754  -0.867  C05  Y57  14  
Y57  C06  C13  C  0  1  Y  N  N   5.226   2.865  27.967   5.099  -0.438  -1.139  C06  Y57  15  
Y57  C07  C14  C  0  1  N  N  N   4.370   2.284  30.273   2.659  -0.528  -0.592  C07  Y57  16  
Y57  C08  C15  C  0  1  N  N  N   3.711   0.965  30.675   2.303   0.788   0.102  C08  Y57  17  
Y57  C11  C16  C  0  1  N  N  N   6.011  -0.687  31.591   1.027   2.845   1.523  C11  Y57  18  
Y57  C12  C17  C  0  1  N  N  N   3.686  -1.695  31.435   1.594   3.492  -0.822  C12  Y57  19  
Y57  NZ   N2   N  0  1  N  N  N   4.012   0.646  32.063   0.945   1.193  -0.283  NZ   Y57  20  
Y57  H1   H1   H  0  1  N  N  N   4.643  -0.981  33.210  -0.344   2.846  -0.139  H1   Y57  21  
Y57  H2   H2   H  0  1  N  N  N  -0.892   1.699  37.820  -5.254  -2.933   0.564  H2   Y57  22  
Y57  H    H3   H  0  1  N  N  N   0.492   0.891  37.507  -4.636  -2.459  -0.905  H    Y57  23  
Y57  HA   H5   H  0  1  N  N  N  -0.839   2.763  35.693  -4.873  -0.779   1.506  HA   Y57  24  
Y57  HB2  H7   H  0  1  N  N  N   1.533   0.908  35.236  -3.823  -0.201  -1.300  HB2  Y57  25  
Y57  HB3  H8   H  0  1  N  N  N   1.659   2.672  35.552  -4.118   1.038  -0.057  HB3  Y57  26  
Y57  HG2  H9   H  0  1  N  N  N   0.389   3.132  33.500  -2.514  -0.097   1.455  HG2  Y57  27  
Y57  HG3  H10  H  0  1  N  N  N   0.255   1.368  33.186  -2.219  -1.336   0.212  HG3  Y57  28  
Y57  HD2  H11  H  0  1  N  N  N   2.901   2.856  33.482  -1.403   0.417  -1.341  HD2  Y57  29  
Y57  HD3  H12  H  0  1  N  N  N   2.093   2.544  31.909  -1.698   1.656  -0.097  HD3  Y57  30  
Y57  HE2  H13  H  0  1  N  N  N   2.089   0.092  32.523  -0.093   0.521   1.415  HE2  Y57  31  
Y57  HE3  H14  H  0  1  N  N  N   3.139   0.520  33.917   0.202  -0.719   0.171  HE3  Y57  32  
Y57  H15  H15  H  0  1  N  N  N   2.013   2.528  28.944   3.621  -1.994   1.463  H15  Y57  33  
Y57  H16  H16  H  0  1  N  N  N   1.648   3.088  26.573   5.967  -2.566   1.943  H16  Y57  34  
Y57  H17  H17  H  0  1  N  N  N   3.574   3.500  25.087   7.759  -1.768   0.454  H17  Y57  35  
Y57  H18  H18  H  0  1  N  N  N   5.867   3.357  25.982   7.203  -0.406  -1.521  H18  Y57  36  
Y57  H19  H19  H  0  1  N  N  N   6.231   2.808  28.359   4.856   0.161  -2.004  H19  Y57  37  
Y57  H20  H20  H  0  1  N  N  N   5.452   2.208  30.457   2.524  -0.420  -1.668  H20  Y57  38  
Y57  H21  H21  H  0  1  N  N  N   3.949   3.091  30.891   2.008  -1.321  -0.223  H21  Y57  39  
Y57  H22  H22  H  0  1  N  N  N   2.621   1.053  30.552   2.349   0.653   1.183  H22  Y57  40  
Y57  H23  H23  H  0  1  N  N  N   4.089   0.160  30.028   3.011   1.560  -0.198  H23  Y57  41  
Y57  H24  H24  H  0  1  N  N  N   6.619   0.050  32.136   0.847   3.891   1.769  H24  Y57  42  
Y57  H25  H25  H  0  1  N  N  N   6.453  -1.687  31.710   0.391   2.212   2.143  H25  Y57  43  
Y57  H26  H26  H  0  1  N  N  N   5.984  -0.423  30.524   2.073   2.602   1.709  H26  Y57  44  
Y57  H27  H27  H  0  1  N  N  N   2.677  -1.659  31.872   2.640   3.299  -0.586  H27  Y57  45  
Y57  H28  H28  H  0  1  N  N  N   3.632  -1.443  30.366   1.413   3.270  -1.874  H28  Y57  46  
Y57  H29  H29  H  0  1  N  N  N   4.100  -2.707  31.552   1.364   4.540  -0.627  H29  Y57  47  
Y57  OXT  OXT  O  0  1  N  Y  N  -2.317   0.944  34.895  -6.918   0.517   0.421  OXT  Y57  48  
Y57  HXT  HXT  H  0  1  N  Y  N  -2.760   0.140  34.651  -7.793   0.713   0.060  HXT  Y57  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y57  C04  C05  DOUB  Y  N   1  
Y57  C04  C03  SING  Y  N   2  
Y57  C05  C06  SING  Y  N   3  
Y57  C03  C02  DOUB  Y  N   4  
Y57  C06  C01  DOUB  Y  N   5  
Y57  C02  C01  SING  Y  N   6  
Y57  C01  C07  SING  N  N   7  
Y57  C07  C08  SING  N  N   8  
Y57  C08  NZ   SING  N  N   9  
Y57  C12  C10  SING  N  N  10  
Y57  C11  C10  SING  N  N  11  
Y57  NZ   C10  SING  N  N  12  
Y57  NZ   CE   SING  N  N  13  
Y57  CE   CD   SING  N  N  14  
Y57  CD   CG   SING  N  N  15  
Y57  CG   CB   SING  N  N  16  
Y57  CB   CA   SING  N  N  17  
Y57  C    O    DOUB  N  N  18  
Y57  C    CA   SING  N  N  19  
Y57  CA   N    SING  N  N  20  
Y57  C10  H1   SING  N  N  21  
Y57  N    H2   SING  N  N  22  
Y57  N    H    SING  N  N  23  
Y57  CA   HA   SING  N  N  24  
Y57  CB   HB2  SING  N  N  25  
Y57  CB   HB3  SING  N  N  26  
Y57  CG   HG2  SING  N  N  27  
Y57  CG   HG3  SING  N  N  28  
Y57  CD   HD2  SING  N  N  29  
Y57  CD   HD3  SING  N  N  30  
Y57  CE   HE2  SING  N  N  31  
Y57  CE   HE3  SING  N  N  32  
Y57  C02  H15  SING  N  N  33  
Y57  C03  H16  SING  N  N  34  
Y57  C04  H17  SING  N  N  35  
Y57  C05  H18  SING  N  N  36  
Y57  C06  H19  SING  N  N  37  
Y57  C07  H20  SING  N  N  38  
Y57  C07  H21  SING  N  N  39  
Y57  C08  H22  SING  N  N  40  
Y57  C08  H23  SING  N  N  41  
Y57  C11  H24  SING  N  N  42  
Y57  C11  H25  SING  N  N  43  
Y57  C11  H26  SING  N  N  44  
Y57  C12  H27  SING  N  N  45  
Y57  C12  H28  SING  N  N  46  
Y57  C12  H29  SING  N  N  47  
Y57  C    OXT  SING  N  N  48  
Y57  OXT  HXT  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y57  SMILES            ACDLabs               12.01  "C(C)(C)N(CCCCC(N)C(=O)O)CCc1ccccc1"  
Y57  InChI             InChI                 1.03   "InChI=1S/C17H28N2O2/c1-14(2)19(12-7-6-10-16(18)17(20)21)13-11-15-8-4-3-5-9-15/h3-5,8-9,14,16H,6-7,10-13,18H2,1-2H3,(H,20,21)/t16-/m0/s1"  
Y57  InChIKey          InChI                 1.03   XGCVHMMQJAIVRH-INIZCTEOSA-N  
Y57  SMILES_CANONICAL  CACTVS                3.385  "CC(C)N(CCCC[C@H](N)C(O)=O)CCc1ccccc1"  
Y57  SMILES            CACTVS                3.385  "CC(C)N(CCCC[CH](N)C(O)=O)CCc1ccccc1"  
Y57  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)N(CCCC[C@@H](C(=O)O)N)CCc1ccccc1"  
Y57  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)N(CCCCC(C(=O)O)N)CCc1ccccc1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y57  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~6~-(2-phenylethyl)-N~6~-propan-2-yl-L-lysine"  
Y57  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-azanyl-6-[2-phenylethyl(propan-2-yl)amino]hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y57  "Create component"  2021-02-04  RCSB  
Y57  "Initial release"   2021-12-15  RCSB  
##
