data_Y64
#

_chem_comp.id                                   Y64
_chem_comp.name                                 "(1S,2S)-2-((S)-2-(((((1R,3R,5S)-bicyclo[3.3.1]non-6-en-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H39 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-08
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       529.647
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y64
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y64  C12  C1   C  0  1  N  N  N  10.628  21.587  27.970  -1.293  -0.177   0.921  C12  Y64   1  
Y64  C14  C2   C  0  1  N  N  N  13.068  21.963  28.397  -0.378  -1.311  -1.086  C14  Y64   2  
Y64  C15  C3   C  0  1  N  N  N  14.419  22.489  27.969   0.770  -1.308  -2.098  C15  Y64   3  
Y64  C16  C4   C  0  1  N  N  N  15.473  22.176  29.030   0.563  -2.440  -3.106  C16  Y64   4  
Y64  C17  C5   C  0  1  N  N  N  14.887  21.911  26.659   0.796   0.033  -2.835  C17  Y64   5  
Y64  C19  C6   C  0  1  N  N  N  10.830  24.021  26.153   2.308  -0.302   0.306  C19  Y64   6  
Y64  C21  C7   C  0  1  N  N  N   9.339  25.767  25.420   4.689  -0.255   0.463  C21  Y64   7  
Y64  C24  C8   C  0  1  N  N  R   6.730  27.908  24.863   7.180   1.322   0.944  C24  Y64   8  
Y64  C25  C9   C  0  1  N  N  N   6.871  29.008  25.903   8.151   0.486   0.109  C25  Y64   9  
Y64  C26  C10  C  0  1  N  N  S   8.248  28.868  26.539   7.368  -0.663  -0.538  C26  Y64  10  
Y64  C02  C11  C  0  1  N  N  N   6.567  20.958  24.892  -2.995   2.670  -0.291  C02  Y64  11  
Y64  C04  C12  C  0  1  N  N  N   5.650  22.702  26.263  -4.829   3.596  -1.375  C04  Y64  12  
Y64  C05  C13  C  0  1  N  N  N   6.672  21.919  27.108  -5.194   3.574   0.126  C05  Y64  13  
Y64  C06  C14  C  0  1  N  N  S   7.474  21.045  26.127  -4.142   2.593   0.692  C06  Y64  14  
Y64  C07  C15  C  0  1  N  N  N   7.851  19.690  26.735  -4.708   1.172   0.744  C07  Y64  15  
Y64  C08  C16  C  0  1  N  N  S   8.890  19.806  27.914  -3.660   0.227   1.335  C08  Y64  16  
Y64  C09  C17  C  0  1  N  N  S   9.217  18.425  28.483  -4.268  -1.167   1.503  C09  Y64  17  
Y64  C13  C18  C  0  1  N  N  S  11.949  22.181  27.391  -0.108  -0.260  -0.006  C13  Y64  18  
Y64  C22  C19  C  0  1  N  N  R   8.151  26.234  26.326   5.806  -0.735   1.391  C22  Y64  19  
Y64  C23  C20  C  0  1  N  N  N   6.847  26.529  25.514   6.507   0.473   2.011  C23  Y64  20  
Y64  C27  C21  C  0  1  N  N  N   8.465  27.483  27.181   6.820  -1.557   0.588  C27  Y64  21  
Y64  C28  C22  C  0  1  N  N  N   9.238  29.134  25.446   6.190  -0.098  -1.288  C28  Y64  22  
Y64  C29  C23  C  0  1  N  N  N   8.941  28.902  24.176   5.667   1.055  -1.023  C29  Y64  23  
Y64  C30  C24  C  0  1  N  N  N   7.765  28.095  23.737   6.164   1.996   0.032  C30  Y64  24  
Y64  N03  N1   N  0  1  N  N  N   5.558  21.918  25.045  -3.407   3.241  -1.437  N03  Y64  25  
Y64  N11  N2   N  0  1  N  N  N  10.142  20.399  27.422  -2.507   0.152   0.435  N11  Y64  26  
Y64  N18  N3   N  0  1  N  N  N  11.787  23.605  27.061   1.083  -0.639   0.757  N18  Y64  27  
Y64  O01  O1   O  0  1  N  N  N   6.660  20.223  23.950  -1.868   2.280  -0.076  O01  Y64  28  
Y64  O10  O2   O  0  1  N  N  N   8.000  17.881  28.953  -5.460  -1.076   2.286  O10  Y64  29  
Y64  O20  O3   O  0  1  N  N  N  10.565  25.395  26.053   3.403  -0.651   1.008  O20  Y64  30  
Y64  O31  O4   O  0  1  N  N  N  10.201  23.242  25.459   2.424   0.315  -0.733  O31  Y64  31  
Y64  O32  O5   O  0  1  N  N  N  10.019  22.146  28.845  -1.156  -0.411   2.103  O32  Y64  32  
Y64  H1   H1   H  0  1  N  N  N  12.787  22.465  29.335  -1.312  -1.076  -1.595  H1   Y64  33  
Y64  H2   H2   H  0  1  N  N  N  13.163  20.881  28.574  -0.452  -2.295  -0.624  H2   Y64  34  
Y64  H3   H3   H  0  1  N  N  N  14.350  23.582  27.864   1.715  -1.454  -1.576  H3   Y64  35  
Y64  H4   H4   H  0  1  N  N  N  15.153  22.589  29.998  -0.382  -2.294  -3.628  H4   Y64  36  
Y64  H5   H5   H  0  1  N  N  N  15.592  21.086  29.118   1.381  -2.438  -3.827  H5   Y64  37  
Y64  H6   H6   H  0  1  N  N  N  16.433  22.628  28.738   0.545  -3.395  -2.581  H6   Y64  38  
Y64  H7   H7   H  0  1  N  N  N  15.871  22.331  26.403  -0.150   0.179  -3.357  H7   Y64  39  
Y64  H8   H8   H  0  1  N  N  N  14.967  20.818  26.749   0.943   0.840  -2.117  H8   Y64  40  
Y64  H9   H9   H  0  1  N  N  N  14.165  22.162  25.869   1.613   0.035  -3.556  H9   Y64  41  
Y64  H10  H10  H  0  1  N  N  N   9.566  26.592  24.729   4.729   0.831   0.377  H10  Y64  42  
Y64  H11  H11  H  0  1  N  N  N   8.990  24.895  24.848   4.819  -0.701  -0.523  H11  Y64  43  
Y64  H12  H12  H  0  1  N  N  N   5.728  27.988  24.416   7.749   2.107   1.442  H12  Y64  44  
Y64  H13  H13  H  0  1  N  N  N   6.779  29.993  25.422   8.598   1.108  -0.667  H13  Y64  45  
Y64  H14  H14  H  0  1  N  N  N   6.091  28.900  26.671   8.933   0.081   0.751  H14  Y64  46  
Y64  H15  H15  H  0  1  N  N  N   8.358  29.636  27.319   8.013  -1.238  -1.202  H15  Y64  47  
Y64  H16  H16  H  0  1  N  N  N   6.010  23.720  26.051  -5.425   2.864  -1.918  H16  Y64  48  
Y64  H17  H17  H  0  1  N  N  N   4.676  22.756  26.772  -4.989   4.593  -1.787  H17  Y64  49  
Y64  H18  H18  H  0  1  N  N  N   6.152  21.286  27.843  -5.083   4.564   0.569  H18  Y64  50  
Y64  H19  H19  H  0  1  N  N  N   7.343  22.615  27.633  -6.205   3.194   0.276  H19  Y64  51  
Y64  H20  H20  H  0  1  N  N  N   8.396  21.579  25.852  -3.817   2.909   1.683  H20  Y64  52  
Y64  H21  H21  H  0  1  N  N  N   6.937  19.213  27.120  -5.602   1.160   1.368  H21  Y64  53  
Y64  H22  H22  H  0  1  N  N  N   8.288  19.062  25.945  -4.964   0.846  -0.264  H22  Y64  54  
Y64  H23  H23  H  0  1  N  N  N   8.458  20.435  28.707  -3.339   0.603   2.307  H23  Y64  55  
Y64  H24  H24  H  0  1  N  N  N   9.868  18.594  29.354  -3.552  -1.817   2.005  H24  Y64  56  
Y64  S1   S1   S  0  1  N  Y  N   9.652  17.797  27.734  -4.667  -1.853  -0.128  S1   Y64  57  
Y64  H26  H26  H  0  1  N  N  N  12.195  21.626  26.473   0.054   0.710  -0.476  H26  Y64  58  
Y64  H27  H27  H  0  1  N  N  N   7.925  25.409  27.018   5.381  -1.354   2.181  H27  Y64  59  
Y64  H28  H28  H  0  1  N  N  N   5.995  26.413  26.201   7.260   0.125   2.719  H28  Y64  60  
Y64  H29  H29  H  0  1  N  N  N   6.778  25.778  24.714   5.773   1.080   2.541  H29  Y64  61  
Y64  H30  H30  H  0  1  N  N  N   7.830  27.434  28.078   6.329  -2.431   0.159  H30  Y64  62  
Y64  H31  H31  H  0  1  N  N  N   9.523  27.421  27.476   7.636  -1.873   1.237  H31  Y64  63  
Y64  H32  H32  H  0  1  N  N  N  10.213  29.523  25.699   5.761  -0.685  -2.086  H32  Y64  64  
Y64  H33  H33  H  0  1  N  N  N   9.585  29.320  23.417   4.811   1.363  -1.606  H33  Y64  65  
Y64  H34  H34  H  0  1  N  N  N   7.280  28.607  22.893   5.319   2.338   0.631  H34  Y64  66  
Y64  H35  H35  H  0  1  N  N  N   8.117  27.105  23.412   6.630   2.856  -0.448  H35  Y64  67  
Y64  H36  H36  H  0  1  N  N  N   4.833  22.052  24.370  -2.836   3.398  -2.206  H36  Y64  68  
Y64  H37  H37  H  0  1  N  N  N  10.650  19.947  26.688  -2.616   0.340  -0.510  H37  Y64  69  
Y64  H38  H38  H  0  1  N  N  N  12.377  24.283  27.500   0.991  -1.132   1.587  H38  Y64  70  
Y64  H39  H39  H  0  1  N  N  N   8.158  17.018  29.317  -6.143  -0.512   1.898  H39  Y64  71  
Y64  O2   O6   O  0  1  N  Y  N       ?       ?       ?  -5.658  -1.064  -0.772  O2   Y64  72  
Y64  O1   O7   O  0  1  N  Y  N       ?       ?       ?  -3.482  -2.240  -0.810  O1   Y64  73  
Y64  O3   O8   O  0  1  N  Y  N       ?       ?       ?  -5.372  -3.167   0.174  O3   Y64  74  
Y64  H25  H25  H  0  1  N  Y  N       ?       ?       ?  -5.649  -3.655  -0.613  H25  Y64  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y64  C30  C29  SING  N  N   1  
Y64  C30  C24  SING  N  N   2  
Y64  O01  C02  DOUB  N  N   3  
Y64  C29  C28  DOUB  N  N   4  
Y64  C24  C23  SING  N  N   5  
Y64  C24  C25  SING  N  N   6  
Y64  C02  N03  SING  N  N   7  
Y64  C02  C06  SING  N  N   8  
Y64  N03  C04  SING  N  N   9  
Y64  C21  O20  SING  N  N  10  
Y64  C21  C22  SING  N  N  11  
Y64  C28  C26  SING  N  N  12  
Y64  O31  C19  DOUB  N  N  13  
Y64  C23  C22  SING  N  N  14  
Y64  C25  C26  SING  N  N  15  
Y64  O20  C19  SING  N  N  16  
Y64  C06  C07  SING  N  N  17  
Y64  C06  C05  SING  N  N  18  
Y64  C19  N18  SING  N  N  19  
Y64  C04  C05  SING  N  N  20  
Y64  C22  C27  SING  N  N  21  
Y64  C26  C27  SING  N  N  22  
Y64  C17  C15  SING  N  N  23  
Y64  C07  C08  SING  N  N  24  
Y64  N18  C13  SING  N  N  25  
Y64  C13  C12  SING  N  N  26  
Y64  C13  C14  SING  N  N  27  
Y64  N11  C08  SING  N  N  28  
Y64  N11  C12  SING  N  N  29  
Y64  C08  C09  SING  N  N  30  
Y64  C15  C14  SING  N  N  31  
Y64  C15  C16  SING  N  N  32  
Y64  C12  O32  DOUB  N  N  33  
Y64  C09  O10  SING  N  N  34  
Y64  C14  H1   SING  N  N  35  
Y64  C14  H2   SING  N  N  36  
Y64  C15  H3   SING  N  N  37  
Y64  C16  H4   SING  N  N  38  
Y64  C16  H5   SING  N  N  39  
Y64  C16  H6   SING  N  N  40  
Y64  C17  H7   SING  N  N  41  
Y64  C17  H8   SING  N  N  42  
Y64  C17  H9   SING  N  N  43  
Y64  C21  H10  SING  N  N  44  
Y64  C21  H11  SING  N  N  45  
Y64  C24  H12  SING  N  N  46  
Y64  C25  H13  SING  N  N  47  
Y64  C25  H14  SING  N  N  48  
Y64  C26  H15  SING  N  N  49  
Y64  C04  H16  SING  N  N  50  
Y64  C04  H17  SING  N  N  51  
Y64  C05  H18  SING  N  N  52  
Y64  C05  H19  SING  N  N  53  
Y64  C06  H20  SING  N  N  54  
Y64  C07  H21  SING  N  N  55  
Y64  C07  H22  SING  N  N  56  
Y64  C08  H23  SING  N  N  57  
Y64  C09  H24  SING  N  N  58  
Y64  C09  S1   SING  N  N  59  
Y64  C13  H26  SING  N  N  60  
Y64  C22  H27  SING  N  N  61  
Y64  C23  H28  SING  N  N  62  
Y64  C23  H29  SING  N  N  63  
Y64  C27  H30  SING  N  N  64  
Y64  C27  H31  SING  N  N  65  
Y64  C28  H32  SING  N  N  66  
Y64  C29  H33  SING  N  N  67  
Y64  C30  H34  SING  N  N  68  
Y64  C30  H35  SING  N  N  69  
Y64  N03  H36  SING  N  N  70  
Y64  N11  H37  SING  N  N  71  
Y64  N18  H38  SING  N  N  72  
Y64  O10  H39  SING  N  N  73  
Y64  S1   O2   DOUB  N  N  74  
Y64  S1   O1   DOUB  N  N  75  
Y64  S1   O3   SING  N  N  76  
Y64  O3   H25  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y64  InChI             InChI                 1.03   "InChI=1S/C24H39N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h3-4,14-20,23,30H,5-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17-,18-,19-,20-,23-/m0/s1"  
Y64  InChIKey          InChI                 1.03   ZIWRGXZFSGDQST-LZHMTVEHSA-N  
Y64  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC[C@@H]1C[C@@H]2CC=C[C@H](C1)C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"  
Y64  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC=C[CH](C1)C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Y64  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2C[C@@H]3CC=C[C@@H](C3)C2"  
Y64  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC=CC(C3)C2"  
#
_pdbx_chem_comp_identifier.comp_id          Y64
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-2-[[(1~{R},3~{R},5~{S})-3-bicyclo[3.3.1]non-6-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y64  "Create component"  2021-02-08  RCSB  
Y64  "Modify name"       2021-02-09  RCSB  
Y64  "Initial release"   2021-02-17  RCSB  
##
