data_Y7M
#

_chem_comp.id                                   Y7M
_chem_comp.name                                 "(1S,2S)-2-((S)-2-(((adamantan-1-ylmethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H41 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-09
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       543.673
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y7M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y7M  C02  C1   C  0  1  N  N  N  10.748  23.868  26.828  -2.274   0.559   0.754  C02  Y7M   1  
Y7M  C04  C2   C  0  1  N  N  S  11.687  21.964  28.005   0.116   0.311   1.159  C04  Y7M   2  
Y7M  C05  C3   C  0  1  N  N  N  12.828  21.645  29.037   0.213  -0.242   2.582  C05  Y7M   3  
Y7M  C06  C4   C  0  1  N  N  N  14.223  21.915  28.390  -0.897   0.366   3.442  C06  Y7M   4  
Y7M  C07  C5   C  0  1  N  N  N  14.562  20.889  27.285  -0.879  -0.279   4.829  C07  Y7M   5  
Y7M  C08  C6   C  0  1  N  N  N  15.318  21.904  29.472  -0.670   1.873   3.577  C08  Y7M   6  
Y7M  C09  C7   C  0  1  N  N  N  10.357  21.393  28.460   1.280  -0.192   0.345  C09  Y7M   7  
Y7M  C11  C8   C  0  1  N  N  S   8.620  19.628  28.379   3.673  -0.391  -0.070  C11  Y7M   8  
Y7M  C12  C9   C  0  1  N  N  N   7.713  19.608  27.080   4.815   0.625  -0.009  C12  Y7M   9  
Y7M  C13  C10  C  0  1  N  N  S   7.336  21.027  26.624   4.346   1.956  -0.601  C13  Y7M  10  
Y7M  C14  C11  C  0  1  N  N  N   6.412  20.994  25.430   5.451   2.987  -0.528  C14  Y7M  11  
Y7M  C16  C12  C  0  1  N  N  N   5.429  22.442  26.917   4.549   3.168  -2.660  C16  Y7M  12  
Y7M  C17  C13  C  0  1  N  N  N   6.477  21.757  27.698   4.067   1.806  -2.115  C17  Y7M  13  
Y7M  C19  C14  C  0  1  N  N  S   8.910  18.201  28.933   4.151  -1.730   0.496  C19  Y7M  14  
Y7M  C23  C15  C  0  1  N  N  N   9.633  25.649  25.764  -4.609   0.948   0.454  C23  Y7M  15  
Y7M  C24  C16  C  0  1  N  N  N   9.761  27.224  25.752  -5.810   0.336  -0.271  C24  Y7M  16  
Y7M  C25  C17  C  0  1  N  N  N   9.384  27.777  27.120  -7.058   1.174   0.011  C25  Y7M  17  
Y7M  C26  C18  C  0  1  N  N  N   9.396  29.314  27.141  -8.258   0.562  -0.713  C26  Y7M  18  
Y7M  C27  C19  C  0  1  N  N  N   8.517  29.839  26.007  -8.481  -0.867  -0.214  C27  Y7M  19  
Y7M  C28  C20  C  0  1  N  N  N   8.950  29.308  24.624  -7.232  -1.706  -0.497  C28  Y7M  20  
Y7M  C29  C21  C  0  1  N  N  N   8.921  27.778  24.606  -6.032  -1.093   0.228  C29  Y7M  21  
Y7M  C30  C22  C  0  1  N  N  N  10.418  29.730  24.365  -6.962  -1.727  -2.003  C30  Y7M  22  
Y7M  C31  C23  C  0  1  N  N  N  11.348  29.238  25.514  -6.740  -0.298  -2.501  C31  Y7M  23  
Y7M  C32  C24  C  0  1  N  N  N  11.250  27.680  25.539  -5.540   0.314  -1.777  C32  Y7M  24  
Y7M  C33  C25  C  0  1  N  N  N  10.840  29.794  26.874  -7.988   0.540  -2.219  C33  Y7M  25  
Y7M  N03  N1   N  0  1  N  N  N  11.520  23.405  27.859  -1.137  -0.135   0.545  N03  Y7M  26  
Y7M  N10  N2   N  0  1  N  N  N   9.915  20.188  27.987   2.541   0.098   0.722  N10  Y7M  27  
Y7M  N15  N3   N  0  1  N  N  N   5.289  21.807  25.586   5.545   3.646  -1.695  N15  Y7M  28  
Y7M  O01  O1   O  0  1  N  N  N  10.130  23.121  26.041  -2.259   1.555   1.450  O01  Y7M  29  
Y7M  O18  O2   O  0  1  N  N  N   6.554  20.346  24.367   6.149   3.188   0.443  O18  Y7M  30  
Y7M  O20  O3   O  0  1  N  N  N   7.661  17.679  29.433   3.053  -2.642   0.553  O20  Y7M  31  
Y7M  O21  O4   O  0  1  N  N  N   9.609  22.054  29.238   1.082  -0.857  -0.650  O21  Y7M  32  
Y7M  O22  O5   O  0  1  N  N  N  10.673  25.208  26.641  -3.425   0.152   0.186  O22  Y7M  33  
Y7M  H1   H1   H  0  1  N  N  N  11.959  21.518  27.037   0.138   1.400   1.190  H1   Y7M  34  
Y7M  H2   H2   H  0  1  N  N  N  12.707  22.285  29.923   0.101  -1.326   2.559  H2   Y7M  35  
Y7M  H3   H3   H  0  1  N  N  N  12.764  20.589  29.336   1.183   0.015   3.007  H3   Y7M  36  
Y7M  H4   H4   H  0  1  N  N  N  14.199  22.916  27.934  -1.863   0.185   2.970  H4   Y7M  37  
Y7M  H5   H5   H  0  1  N  N  N  15.550  21.119  26.861   0.086  -0.098   5.301  H5   Y7M  38  
Y7M  H6   H6   H  0  1  N  N  N  14.575  19.877  27.716  -1.670   0.155   5.442  H6   Y7M  39  
Y7M  H7   H7   H  0  1  N  N  N  13.802  20.940  26.492  -1.041  -1.352   4.733  H7   Y7M  40  
Y7M  H8   H8   H  0  1  N  N  N  15.069  22.637  30.254   0.296   2.054   4.049  H8   Y7M  41  
Y7M  H9   H9   H  0  1  N  N  N  15.383  20.900  29.917  -0.683   2.332   2.588  H9   Y7M  42  
Y7M  H10  H10  H  0  1  N  N  N  16.285  22.167  29.018  -1.461   2.306   4.189  H10  Y7M  43  
Y7M  H11  H11  H  0  1  N  N  N   8.139  20.241  29.155   3.361  -0.525  -1.106  H11  Y7M  44  
Y7M  H12  H12  H  0  1  N  N  N   6.792  19.048  27.298   5.113   0.775   1.029  H12  Y7M  45  
Y7M  H13  H13  H  0  1  N  N  N   8.263  19.108  26.269   5.665   0.252  -0.581  H13  Y7M  46  
Y7M  H14  H14  H  0  1  N  N  N   8.241  21.611  26.401   3.456   2.310  -0.082  H14  Y7M  47  
Y7M  H15  H15  H  0  1  N  N  N   5.704  23.499  26.789   5.004   3.042  -3.642  H15  Y7M  48  
Y7M  H16  H16  H  0  1  N  N  N   4.472  22.374  27.455   3.714   3.867  -2.720  H16  Y7M  49  
Y7M  H17  H17  H  0  1  N  N  N   6.032  21.035  28.399   4.649   0.988  -2.539  H17  Y7M  50  
Y7M  H18  H18  H  0  1  N  N  N   7.085  22.484  28.257   3.003   1.664  -2.303  H18  Y7M  51  
Y7M  H19  H19  H  0  1  N  N  N   9.583  18.335  29.793   4.550  -1.579   1.499  H19  Y7M  52  
Y7M  S1   S1   S  0  1  N  Y  N   9.303  17.569  28.164   5.448  -2.411  -0.574  S1   Y7M  53  
Y7M  H21  H21  H  0  1  N  N  N   8.648  25.343  26.145  -4.451   1.966   0.098  H21  Y7M  54  
Y7M  H22  H22  H  0  1  N  N  N   9.778  25.240  24.753  -4.802   0.964   1.526  H22  Y7M  55  
Y7M  H23  H23  H  0  1  N  N  N   8.374  27.426  27.379  -7.250   1.190   1.084  H23  Y7M  56  
Y7M  H24  H24  H  0  1  N  N  N  10.104  27.406  27.864  -6.899   2.193  -0.344  H24  Y7M  57  
Y7M  H25  H25  H  0  1  N  N  N   9.041  29.689  28.112  -9.147   1.160  -0.512  H25  Y7M  58  
Y7M  H26  H26  H  0  1  N  N  N   8.575  30.937  25.996  -8.673  -0.851   0.858  H26  Y7M  59  
Y7M  H27  H27  H  0  1  N  N  N   7.478  29.528  26.194  -9.336  -1.303  -0.731  H27  Y7M  60  
Y7M  H28  H28  H  0  1  N  N  N   8.295  29.713  23.839  -7.391  -2.724  -0.141  H28  Y7M  61  
Y7M  H29  H29  H  0  1  N  N  N   7.882  27.433  24.716  -5.143  -1.691   0.027  H29  Y7M  62  
Y7M  H30  H30  H  0  1  N  N  N   9.328  27.418  23.650  -6.224  -1.078   1.301  H30  Y7M  63  
Y7M  H31  H31  H  0  1  N  N  N  10.757  29.292  23.415  -6.073  -2.325  -2.204  H31  Y7M  64  
Y7M  H32  H32  H  0  1  N  N  N  10.472  30.827  24.303  -7.817  -2.164  -2.519  H32  Y7M  65  
Y7M  H33  H33  H  0  1  N  N  N  12.386  29.555  25.331  -6.548  -0.314  -3.574  H33  Y7M  66  
Y7M  H34  H34  H  0  1  N  N  N  11.618  27.279  24.583  -5.381   1.332  -2.132  H34  Y7M  67  
Y7M  H35  H35  H  0  1  N  N  N  11.868  27.292  26.362  -4.650  -0.283  -1.978  H35  Y7M  68  
Y7M  H36  H36  H  0  1  N  N  N  11.497  29.436  27.681  -8.843   0.104  -2.735  H36  Y7M  69  
Y7M  H37  H37  H  0  1  N  N  N  10.858  30.894  26.847  -7.830   1.559  -2.575  H37  Y7M  70  
Y7M  H38  H38  H  0  1  N  N  N  11.958  24.039  28.496  -1.150  -0.930  -0.010  H38  Y7M  71  
Y7M  H39  H39  H  0  1  N  N  N  10.494  19.674  27.354   2.700   0.630   1.517  H39  Y7M  72  
Y7M  H40  H40  H  0  1  N  N  N   4.542  21.935  24.933   6.190   4.348  -1.876  H40  Y7M  73  
Y7M  H41  H41  H  0  1  N  N  N   7.799  16.806  29.781   2.321  -2.342   1.109  H41  Y7M  74  
Y7M  O1   O6   O  0  1  N  Y  N       ?       ?       ?   5.945  -3.631  -0.041  O1   Y7M  75  
Y7M  O2   O7   O  0  1  N  Y  N       ?       ?       ?   5.071  -2.308  -1.941  O2   Y7M  76  
Y7M  O3   O8   O  0  1  N  Y  N       ?       ?       ?   6.609  -1.437  -0.431  O3   Y7M  77  
Y7M  H20  H20  H  0  1  N  Y  N       ?       ?       ?   7.387  -1.674  -0.953  H20  Y7M  78  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y7M  C30  C28  SING  N  N   1  
Y7M  C30  C31  SING  N  N   2  
Y7M  O18  C14  DOUB  N  N   3  
Y7M  C29  C28  SING  N  N   4  
Y7M  C29  C24  SING  N  N   5  
Y7M  C28  C27  SING  N  N   6  
Y7M  C14  N15  SING  N  N   7  
Y7M  C14  C13  SING  N  N   8  
Y7M  C31  C32  SING  N  N   9  
Y7M  C31  C33  SING  N  N  10  
Y7M  C32  C24  SING  N  N  11  
Y7M  N15  C16  SING  N  N  12  
Y7M  C24  C23  SING  N  N  13  
Y7M  C24  C25  SING  N  N  14  
Y7M  C23  O22  SING  N  N  15  
Y7M  C27  C26  SING  N  N  16  
Y7M  O01  C02  DOUB  N  N  17  
Y7M  C13  C12  SING  N  N  18  
Y7M  C13  C17  SING  N  N  19  
Y7M  O22  C02  SING  N  N  20  
Y7M  C02  N03  SING  N  N  21  
Y7M  C33  C26  SING  N  N  22  
Y7M  C16  C17  SING  N  N  23  
Y7M  C12  C11  SING  N  N  24  
Y7M  C25  C26  SING  N  N  25  
Y7M  C07  C06  SING  N  N  26  
Y7M  N03  C04  SING  N  N  27  
Y7M  N10  C11  SING  N  N  28  
Y7M  N10  C09  SING  N  N  29  
Y7M  C04  C09  SING  N  N  30  
Y7M  C04  C05  SING  N  N  31  
Y7M  C11  C19  SING  N  N  32  
Y7M  C06  C05  SING  N  N  33  
Y7M  C06  C08  SING  N  N  34  
Y7M  C09  O21  DOUB  N  N  35  
Y7M  C19  O20  SING  N  N  36  
Y7M  C04  H1   SING  N  N  37  
Y7M  C05  H2   SING  N  N  38  
Y7M  C05  H3   SING  N  N  39  
Y7M  C06  H4   SING  N  N  40  
Y7M  C07  H5   SING  N  N  41  
Y7M  C07  H6   SING  N  N  42  
Y7M  C07  H7   SING  N  N  43  
Y7M  C08  H8   SING  N  N  44  
Y7M  C08  H9   SING  N  N  45  
Y7M  C08  H10  SING  N  N  46  
Y7M  C11  H11  SING  N  N  47  
Y7M  C12  H12  SING  N  N  48  
Y7M  C12  H13  SING  N  N  49  
Y7M  C13  H14  SING  N  N  50  
Y7M  C16  H15  SING  N  N  51  
Y7M  C16  H16  SING  N  N  52  
Y7M  C17  H17  SING  N  N  53  
Y7M  C17  H18  SING  N  N  54  
Y7M  C19  H19  SING  N  N  55  
Y7M  C19  S1   SING  N  N  56  
Y7M  C23  H21  SING  N  N  57  
Y7M  C23  H22  SING  N  N  58  
Y7M  C25  H23  SING  N  N  59  
Y7M  C25  H24  SING  N  N  60  
Y7M  C26  H25  SING  N  N  61  
Y7M  C27  H26  SING  N  N  62  
Y7M  C27  H27  SING  N  N  63  
Y7M  C28  H28  SING  N  N  64  
Y7M  C29  H29  SING  N  N  65  
Y7M  C29  H30  SING  N  N  66  
Y7M  C30  H31  SING  N  N  67  
Y7M  C30  H32  SING  N  N  68  
Y7M  C31  H33  SING  N  N  69  
Y7M  C32  H34  SING  N  N  70  
Y7M  C32  H35  SING  N  N  71  
Y7M  C33  H36  SING  N  N  72  
Y7M  C33  H37  SING  N  N  73  
Y7M  N03  H38  SING  N  N  74  
Y7M  N10  H39  SING  N  N  75  
Y7M  N15  H40  SING  N  N  76  
Y7M  O20  H41  SING  N  N  77  
Y7M  S1   O1   DOUB  N  N  78  
Y7M  S1   O2   DOUB  N  N  79  
Y7M  S1   O3   SING  N  N  80  
Y7M  O3   H20  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y7M  InChI             InChI                 1.03   "InChI=1S/C25H41N3O8S/c1-14(2)5-19(22(30)27-20(23(31)37(33,34)35)9-18-3-4-26-21(18)29)28-24(32)36-13-25-10-15-6-16(11-25)8-17(7-15)12-25/h14-20,23,31H,3-13H2,1-2H3,(H,26,29)(H,27,30)(H,28,32)(H,33,34,35)/t15-,16+,17-,18-,19-,20-,23-,25-/m0/s1"  
Y7M  InChIKey          InChI                 1.03   AFONNBAHWVWJGI-WSGOIKEKSA-N  
Y7M  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OCC12CC3CC(CC(C3)C1)C2)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@@H](O)[S](O)(=O)=O"  
Y7M  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OCC12CC3CC(CC(C3)C1)C2)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O"  
Y7M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC23CC4CC(C2)CC(C4)C3"  
Y7M  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC23CC4CC(C2)CC(C4)C3"  
#
_pdbx_chem_comp_identifier.comp_id          Y7M
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-2-(1-adamantylmethoxycarbonylamino)-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y7M  "Create component"  2021-02-09  RCSB  
Y7M  "Modify name"       2021-02-09  RCSB  
Y7M  "Initial release"   2021-02-17  RCSB  
##
