data_Y8P
#

_chem_comp.id                                   Y8P
_chem_comp.name                                 "(3~{S},4~{S})-4-methyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclohexene-1-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H25 N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-10
_chem_comp.pdbx_modified_date                   2021-08-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       388.353
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ?
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LOM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y8P  C18  C1   C  0  1  N  N  N  -2.266  -54.631  -77.625   0.478   1.452   0.403  C18  Y8P   1  
Y8P  C17  C2   C  0  1  Y  N  N  -1.820  -52.595  -76.137  -1.976   0.938   0.526  C17  Y8P   2  
Y8P  C16  C3   C  0  1  Y  N  N  -2.194  -53.943  -76.250  -0.964   1.800   0.137  C16  Y8P   3  
Y8P  C13  C4   C  0  1  Y  N  N  -2.117  -52.798  -73.751  -3.543   2.505  -0.381  C13  Y8P   4  
Y8P  C12  C5   C  0  1  Y  N  N  -1.779  -52.023  -74.861  -3.293   1.301   0.259  C12  Y8P   5  
Y8P  C11  C6   C  0  1  N  N  N  -0.650  -48.095  -80.646   0.668  -3.827  -1.145  C11  Y8P   6  
Y8P  C01  C7   C  0  1  N  N  N  -0.957  -48.345  -78.032   0.335  -2.795   1.106  C01  Y8P   7  
Y8P  C02  C8   C  0  1  N  N  R  -1.221  -47.558  -79.336   1.092  -2.685  -0.219  C02  Y8P   8  
Y8P  C03  C9   C  0  1  N  N  N  -1.577  -46.072  -79.214   2.574  -2.772   0.039  C03  Y8P   9  
Y8P  C06  C10  C  0  1  N  N  R  -0.183  -49.673  -78.088  -1.169  -2.707   0.844  C06  Y8P  10  
Y8P  C08  C11  C  0  1  N  N  S   0.286  -50.174  -79.476  -1.593  -3.849  -0.082  C08  Y8P  11  
Y8P  C09  C12  C  0  1  N  N  N  -1.433  -51.717  -77.399  -1.659  -0.365   1.214  C09  Y8P  12  
Y8P  O40  O1   O  0  1  N  N  N  -0.968  -54.966  -78.070   1.319   2.497  -0.091  O40  Y8P  13  
Y8P  O42  O2   O  0  1  N  N  N  -0.878  -54.204  -80.557   3.313   2.264   1.439  O42  Y8P  14  
Y8P  O43  O3   O  0  1  N  N  N  -1.823  -56.426  -80.054   3.497   1.243  -0.862  O43  Y8P  15  
Y8P  O44  O4   O  0  1  N  N  N   0.603  -56.036  -79.806   3.534   3.848  -0.513  O44  Y8P  16  
Y8P  P41  P1   P  0  1  N  N  N  -0.771  -55.415  -79.659   2.924   2.459   0.024  P41  Y8P  17  
Y8P  C10  C13  C  0  1  N  N  N  -0.481  -49.644  -80.683  -0.837  -3.739  -1.408  C10  Y8P  18  
Y8P  C15  C14  C  0  1  Y  N  N  -2.512  -54.648  -75.088  -1.293   2.984  -0.498  C15  Y8P  19  
Y8P  C20  C15  C  0  1  N  N  N  -2.069  -52.146  -72.339  -4.964   2.912  -0.676  C20  Y8P  20  
Y8P  C21  C16  C  0  1  N  N  N   1.192  -51.492  -79.531  -3.098  -3.761  -0.345  C21  Y8P  21  
Y8P  N07  N1   N  0  1  N  N  N  -0.401  -50.694  -76.972  -1.481  -1.420   0.208  N07  Y8P  22  
Y8P  N14  N2   N  0  1  Y  N  N  -2.473  -54.068  -73.885  -2.551   3.298  -0.735  N14  Y8P  23  
Y8P  O04  O5   O  0  1  N  N  N  -1.478  -45.506  -78.095   3.439  -2.698  -0.984  O04  Y8P  24  
Y8P  O05  O6   O  0  1  N  N  N  -1.963  -45.427  -80.220   2.983  -2.908   1.168  O05  Y8P  25  
Y8P  O19  O7   O  0  1  N  N  N  -1.407  -50.686  -74.702  -4.319   0.486   0.622  O19  Y8P  26  
Y8P  H1   H1   H  0  1  N  N  N  -2.734  -53.948  -78.349   0.632   1.338   1.476  H1   Y8P  27  
Y8P  H2   H2   H  0  1  N  N  N  -2.870  -55.547  -77.542   0.725   0.518  -0.101  H2   Y8P  28  
Y8P  H3   H3   H  0  1  N  N  N   0.337  -47.637  -80.805   1.207  -3.748  -2.089  H3   Y8P  29  
Y8P  H4   H4   H  0  1  N  N  N  -1.326  -47.802  -81.463   0.899  -4.782  -0.673  H4   Y8P  30  
Y8P  H5   H5   H  0  1  N  N  N  -0.395  -47.676  -77.364   0.567  -3.750   1.578  H5   Y8P  31  
Y8P  H6   H6   H  0  1  N  N  N   0.787  -49.287  -77.742  -1.708  -2.786   1.788  H6   Y8P  32  
Y8P  H7   H7   H  0  1  N  N  N   1.126  -49.469  -79.565  -1.362  -4.804   0.390  H7   Y8P  33  
Y8P  H8   H8   H  0  1  N  N  N  -2.327  -51.204  -77.783  -0.741  -0.256   1.792  H8   Y8P  34  
Y8P  H9   H9   H  0  1  N  N  N  -1.014  -52.362  -78.185  -2.478  -0.633   1.881  H9   Y8P  35  
Y8P  H10  H10  H  0  1  N  N  N  -2.330  -56.088  -80.783   3.279   1.305  -1.802  H10  Y8P  36  
Y8P  H11  H11  H  0  1  N  N  N   1.112  -55.535  -80.432   4.499   3.896  -0.473  H11  Y8P  37  
Y8P  H12  H12  H  0  1  N  N  N  -1.478  -50.108  -80.699  -1.068  -2.784  -1.879  H12  Y8P  38  
Y8P  H13  H13  H  0  1  N  N  N   0.066  -49.918  -81.597  -1.139  -4.552  -2.067  H13  Y8P  39  
Y8P  H14  H14  H  0  1  N  N  N  -2.796  -55.687  -75.163  -0.508   3.660  -0.803  H14  Y8P  40  
Y8P  H15  H15  H  0  1  N  N  N  -2.361  -52.888  -71.582  -5.360   3.483   0.164  H15  Y8P  41  
Y8P  H16  H16  H  0  1  N  N  N  -1.048  -51.794  -72.132  -4.987   3.526  -1.576  H16  Y8P  42  
Y8P  H17  H17  H  0  1  N  N  N  -2.764  -51.294  -72.305  -5.573   2.021  -0.829  H17  Y8P  43  
Y8P  H18  H18  H  0  1  N  N  N   1.641  -51.670  -78.543  -3.329  -2.806  -0.817  H18  Y8P  44  
Y8P  H19  H19  H  0  1  N  N  N   0.569  -52.354  -79.812  -3.400  -4.575  -1.004  H19  Y8P  45  
Y8P  H20  H20  H  0  1  N  N  N   1.989  -51.358  -80.277  -3.637  -3.839   0.600  H20  Y8P  46  
Y8P  H21  H21  H  0  1  N  N  N   0.463  -51.158  -76.774  -0.770  -1.166  -0.461  H21  Y8P  47  
Y8P  H23  H23  H  0  1  N  N  N  -1.731  -44.594  -78.177   4.380  -2.758  -0.769  H23  Y8P  48  
Y8P  H24  H24  H  0  1  N  N  N  -1.431  -50.458  -73.780  -4.662   0.658   1.510  H24  Y8P  49  
Y8P  H22  H22  H  0  1  N  N  N  -1.939  -48.566  -77.588   0.637  -1.981   1.765  H22  Y8P  50  
Y8P  H25  H25  H  0  1  N  N  N  -2.248  -47.919  -79.491   0.860  -1.730  -0.691  H25  Y8P  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y8P  C10  C11  SING  N  N   1  
Y8P  C10  C08  SING  N  N   2  
Y8P  C11  C02  SING  N  N   3  
Y8P  O42  P41  DOUB  N  N   4  
Y8P  O05  C03  DOUB  N  N   5  
Y8P  O43  P41  SING  N  N   6  
Y8P  O44  P41  SING  N  N   7  
Y8P  P41  O40  SING  N  N   8  
Y8P  C21  C08  SING  N  N   9  
Y8P  C08  C06  SING  N  N  10  
Y8P  C02  C03  SING  N  N  11  
Y8P  C02  C01  SING  N  N  12  
Y8P  C03  O04  SING  N  N  13  
Y8P  C06  C01  SING  N  N  14  
Y8P  C06  N07  SING  N  N  15  
Y8P  O40  C18  SING  N  N  16  
Y8P  C18  C16  SING  N  N  17  
Y8P  C09  N07  SING  N  N  18  
Y8P  C09  C17  SING  N  N  19  
Y8P  C16  C17  DOUB  Y  N  20  
Y8P  C16  C15  SING  Y  N  21  
Y8P  C17  C12  SING  Y  N  22  
Y8P  C15  N14  DOUB  Y  N  23  
Y8P  C12  O19  SING  N  N  24  
Y8P  C12  C13  DOUB  Y  N  25  
Y8P  N14  C13  SING  Y  N  26  
Y8P  C13  C20  SING  N  N  27  
Y8P  C18  H1   SING  N  N  28  
Y8P  C18  H2   SING  N  N  29  
Y8P  C11  H3   SING  N  N  30  
Y8P  C11  H4   SING  N  N  31  
Y8P  C01  H5   SING  N  N  32  
Y8P  C06  H6   SING  N  N  33  
Y8P  C08  H7   SING  N  N  34  
Y8P  C09  H8   SING  N  N  35  
Y8P  C09  H9   SING  N  N  36  
Y8P  O43  H10  SING  N  N  37  
Y8P  O44  H11  SING  N  N  38  
Y8P  C10  H12  SING  N  N  39  
Y8P  C10  H13  SING  N  N  40  
Y8P  C15  H14  SING  N  N  41  
Y8P  C20  H15  SING  N  N  42  
Y8P  C20  H16  SING  N  N  43  
Y8P  C20  H17  SING  N  N  44  
Y8P  C21  H18  SING  N  N  45  
Y8P  C21  H19  SING  N  N  46  
Y8P  C21  H20  SING  N  N  47  
Y8P  N07  H21  SING  N  N  48  
Y8P  O04  H23  SING  N  N  49  
Y8P  O19  H24  SING  N  N  50  
Y8P  C01  H22  SING  N  N  51  
Y8P  C02  H25  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y8P  SMILES            ACDLabs               12.01  "Oc1c(CNC2CC(CCC2C)C(=O)O)c(cnc1C)COP(=O)(O)O"  
Y8P  InChI             InChI                 1.03   "InChI=1S/C16H25N2O7P/c1-9-3-4-11(16(20)21)5-14(9)18-7-13-12(8-25-26(22,23)24)6-17-10(2)15(13)19/h6,9,11,14,18-19H,3-5,7-8H2,1-2H3,(H,20,21)(H2,22,23,24)/t9-,11?,14+/m0/s1"  
Y8P  InChIKey          InChI                 1.03   VMGXIUNFRDERKW-FGBBXPCBSA-N  
Y8P  SMILES_CANONICAL  CACTVS                3.385  "C[C@H]1CC[C@H](C[C@H]1NCc2c(O)c(C)ncc2CO[P](O)(O)=O)C(O)=O"  
Y8P  SMILES            CACTVS                3.385  "C[CH]1CC[CH](C[CH]1NCc2c(O)c(C)ncc2CO[P](O)(O)=O)C(O)=O"  
Y8P  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H]2CC(CC[C@@H]2C)C(=O)O)O"  
Y8P  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2CC(CCC2C)C(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y8P  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,3R,4S)-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]-4-methylcyclohexane-1-carboxylic acid"  
Y8P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(3~{R},4~{S})-4-methyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclohexane-1-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y8P  "Create component"    2021-02-10  RCSB  
Y8P  "Modify value order"  2021-08-17  RCSB  
Y8P  "Initial release"     2021-08-25  RCSB  
##
