data_Y8S
#

_chem_comp.id                                   Y8S
_chem_comp.name                                 "(1R,2S)-2-((S)-2-(((((1R,3S,5S)-bicyclo[3.3.1]non-6-en-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H39 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-10
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       529.647
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y8S
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y8S  N11  N1   N  0  1  N  N  N  10.291  20.257  27.254   2.540  -0.337  -0.141  N11  Y8S   1  
Y8S  C12  C1   C  0  1  N  N  N  10.777  21.511  27.694   1.269   0.105  -0.057  C12  Y8S   2  
Y8S  C14  C2   C  0  1  N  N  N  13.258  21.789  28.161   0.341  -1.010  -2.068  C14  Y8S   3  
Y8S  N18  N2   N  0  1  N  N  N  12.070  23.456  26.814  -1.132  -0.050  -0.368  N18  Y8S   4  
Y8S  C19  C3   C  0  1  N  N  N  11.158  23.912  25.950  -2.278  -0.753  -0.267  C19  Y8S   5  
Y8S  C21  C4   C  0  1  N  N  N   9.965  25.795  25.020  -4.640  -0.933   0.021  C21  Y8S   6  
Y8S  C22  C5   C  0  1  N  N  S  10.402  27.027  24.204  -5.861  -0.035   0.234  C22  Y8S   7  
Y8S  C23  C6   C  0  1  N  N  N   9.300  27.631  23.300  -7.129  -0.886   0.214  C23  Y8S   8  
Y8S  C24  C7   C  0  1  N  N  R   8.429  28.704  23.963  -8.360  -0.039   0.498  C24  Y8S   9  
Y8S  C25  C8   C  0  1  N  N  N   8.385  28.524  25.479  -8.216   0.711   1.823  C25  Y8S  10  
Y8S  C26  C9   C  0  1  N  N  S   9.787  28.786  25.978  -6.966   1.595   1.746  C26  Y8S  11  
Y8S  C27  C10  C  0  1  N  N  N  10.868  28.148  25.104  -5.743   0.676   1.586  C27  Y8S  12  
Y8S  C02  C11  C  0  1  N  N  N   6.698  20.953  24.720   3.512  -2.155   1.599  C02  Y8S  13  
Y8S  C04  C12  C  0  1  N  N  N   5.665  22.580  26.161   5.517  -3.327   1.541  C04  Y8S  14  
Y8S  C05  C13  C  0  1  N  N  N   6.846  21.955  26.929   5.835  -1.982   2.231  C05  Y8S  15  
Y8S  C06  C14  C  0  1  N  N  S   7.608  21.037  25.948   4.598  -1.134   1.855  C06  Y8S  16  
Y8S  C07  C15  C  0  1  N  N  N   7.928  19.665  26.560   4.873  -0.316   0.591  C07  Y8S  17  
Y8S  C08  C16  C  0  1  N  N  S   8.990  19.720  27.723   3.647   0.536   0.258  C08  Y8S  18  
Y8S  C09  C17  C  0  1  N  N  R   9.172  18.286  28.233   3.985   1.489  -0.890  C09  Y8S  19  
Y8S  C13  C18  C  0  1  N  N  S  12.149  22.026  27.148   0.139  -0.748  -0.574  C13  Y8S  20  
Y8S  C15  C19  C  0  1  N  N  N  14.602  22.318  27.709  -0.736  -1.976  -2.566  C15  Y8S  21  
Y8S  C16  C20  C  0  1  N  N  N  15.677  22.137  28.801  -0.611  -2.142  -4.082  C16  Y8S  22  
Y8S  C17  C21  C  0  1  N  N  N  15.066  21.641  26.425  -0.554  -3.336  -1.887  C17  Y8S  23  
Y8S  C28  C22  C  0  1  N  N  N   9.898  30.250  25.893  -7.056   2.472   0.525  C28  Y8S  24  
Y8S  C29  C23  C  0  1  N  N  N   9.569  30.847  24.756  -7.785   2.184  -0.504  C29  Y8S  25  
Y8S  C30  C24  C  0  1  N  N  N   8.929  30.130  23.597  -8.639   0.949  -0.626  C30  Y8S  26  
Y8S  N03  N3   N  0  1  N  N  N   5.631  21.840  24.909   4.054  -3.374   1.433  N03  Y8S  27  
Y8S  O01  O1   O  0  1  N  N  N   6.839  20.268  23.749   2.325  -1.911   1.556  O01  Y8S  28  
Y8S  O10  O2   O  0  1  N  N  N   9.914  18.412  29.397   4.506   0.743  -1.991  O10  Y8S  29  
Y8S  O20  O3   O  0  1  N  N  N  10.941  25.264  25.919  -3.447  -0.112  -0.078  O20  Y8S  30  
Y8S  O31  O4   O  0  1  N  N  N  10.541  23.174  25.221  -2.256  -1.965  -0.347  O31  Y8S  31  
Y8S  O32  O5   O  0  1  N  N  N  10.139  22.202  28.447   1.035   1.188   0.435  O32  Y8S  32  
Y8S  H1   H1   H  0  1  N  N  N  10.838  19.720  26.612   2.721  -1.234  -0.463  H1   Y8S  33  
Y8S  H2   H2   H  0  1  N  N  N  12.984  22.288  29.102   0.267  -0.071  -2.615  H2   Y8S  34  
Y8S  H3   H3   H  0  1  N  N  N  13.348  20.706  28.333   1.326  -1.449  -2.230  H3   Y8S  35  
Y8S  H4   H4   H  0  1  N  N  N  12.708  24.097  27.240  -1.150   0.918  -0.304  H4   Y8S  36  
Y8S  H5   H5   H  0  1  N  N  N   9.081  26.078  25.611  -4.542  -1.617   0.864  H5   Y8S  37  
Y8S  H6   H6   H  0  1  N  N  N   9.692  25.000  24.310  -4.765  -1.505  -0.898  H6   Y8S  38  
Y8S  H7   H7   H  0  1  N  N  N  11.242  26.728  23.560  -5.909   0.707  -0.563  H7   Y8S  39  
Y8S  H8   H8   H  0  1  N  N  N   8.642  26.813  22.972  -7.233  -1.350  -0.767  H8   Y8S  40  
Y8S  H9   H9   H  0  1  N  N  N   9.788  28.082  22.424  -7.049  -1.666   0.971  H9   Y8S  41  
Y8S  H10  H10  H  0  1  N  N  N   7.405  28.598  23.576  -9.220  -0.704   0.575  H10  Y8S  42  
Y8S  H11  H11  H  0  1  N  N  N   7.681  29.241  25.927  -9.096   1.332   1.990  H11  Y8S  43  
Y8S  H12  H12  H  0  1  N  N  N   8.076  27.499  25.732  -8.110  -0.004   2.639  H12  Y8S  44  
Y8S  H13  H13  H  0  1  N  N  N   9.892  28.444  27.018  -6.872   2.203   2.646  H13  Y8S  45  
Y8S  H14  H14  H  0  1  N  N  N  11.647  27.747  25.768  -5.729  -0.061   2.389  H14  Y8S  46  
Y8S  H15  H15  H  0  1  N  N  N  11.298  28.936  24.468  -4.829   1.269   1.613  H15  Y8S  47  
Y8S  H16  H16  H  0  1  N  N  N   5.840  23.651  25.978   5.970  -3.359   0.550  H16  Y8S  48  
Y8S  H17  H17  H  0  1  N  N  N   6.471  21.366  27.779   5.910  -2.105   3.312  H17  Y8S  49  
Y8S  H18  H18  H  0  1  N  N  N   7.515  22.747  27.298   6.747  -1.543   1.827  H18  Y8S  50  
Y8S  H19  H19  H  0  1  N  N  N   8.550  21.528  25.662   4.318  -0.478   2.679  H19  Y8S  51  
Y8S  H20  H20  H  0  1  N  N  N   6.997  19.238  26.961   5.732   0.333   0.759  H20  Y8S  52  
Y8S  H21  H21  H  0  1  N  N  N   8.318  19.013  25.765   5.083  -0.991  -0.239  H21  Y8S  53  
Y8S  H22  H22  H  0  1  N  N  N   8.594  20.348  28.535   3.356   1.113   1.136  H22  Y8S  54  
Y8S  S1   S1   S  0  1  N  Y  N   9.685  17.684  27.513   5.224   2.691  -0.332  S1   Y8S  55  
Y8S  H24  H24  H  0  1  N  N  N   8.170  17.917  28.497   3.083   2.016  -1.202  H24  Y8S  56  
Y8S  H25  H25  H  0  1  N  N  N  12.384  21.457  26.236   0.124  -1.696  -0.037  H25  Y8S  57  
Y8S  H26  H26  H  0  1  N  N  N  14.500  23.395  27.510  -1.721  -1.578  -2.323  H26  Y8S  58  
Y8S  H27  H27  H  0  1  N  N  N  15.344  22.625  29.729   0.374  -2.540  -4.324  H27  Y8S  59  
Y8S  H28  H28  H  0  1  N  N  N  15.833  21.064  28.987  -1.378  -2.830  -4.436  H28  Y8S  60  
Y8S  H29  H29  H  0  1  N  N  N  16.620  22.592  28.466  -0.741  -1.173  -4.565  H29  Y8S  61  
Y8S  H30  H30  H  0  1  N  N  N  16.043  22.049  26.127  -0.643  -3.218  -0.808  H30  Y8S  62  
Y8S  H31  H31  H  0  1  N  N  N  15.157  20.558  26.594  -1.321  -4.024  -2.242  H31  Y8S  63  
Y8S  H32  H32  H  0  1  N  N  N  14.332  21.827  25.627   0.431  -3.734  -2.130  H32  Y8S  64  
Y8S  H33  H33  H  0  1  N  N  N  10.240  30.827  26.739  -6.483   3.388   0.507  H33  Y8S  65  
Y8S  H34  H34  H  0  1  N  N  N   9.771  31.903  24.656  -7.766   2.869  -1.339  H34  Y8S  66  
Y8S  H35  H35  H  0  1  N  N  N   9.668  30.045  22.787  -8.450   0.464  -1.583  H35  Y8S  67  
Y8S  H36  H36  H  0  1  N  N  N   8.071  30.723  23.249  -9.686   1.252  -0.582  H36  Y8S  68  
Y8S  H37  H37  H  0  1  N  N  N  10.066  17.552  29.771   3.895   0.080  -2.341  H37  Y8S  69  
Y8S  O1   O6   O  0  1  N  Y  N       ?       ?       ?   6.394   2.025   0.124  O1   Y8S  70  
Y8S  O2   O7   O  0  1  N  Y  N       ?       ?       ?   5.308   3.779  -1.243  O2   Y8S  71  
Y8S  O3   O8   O  0  1  N  Y  N       ?       ?       ?   4.624   3.300   0.926  O3   Y8S  72  
Y8S  H23  H23  H  0  1  N  N  N   4.725  22.452  26.717   5.878  -4.157   2.148  H23  Y8S  73  
Y8S  H38  H38  H  0  1  N  N  N   4.901  21.956  24.235   3.544  -4.181   1.263  H38  Y8S  74  
Y8S  H39  H39  H  0  1  N  Y  N       ?       ?       ?   5.182   3.971   1.343  H39  Y8S  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y8S  C23  C24  SING  N  N   1  
Y8S  C23  C22  SING  N  N   2  
Y8S  C30  C24  SING  N  N   3  
Y8S  C30  C29  SING  N  N   4  
Y8S  O01  C02  DOUB  N  N   5  
Y8S  C24  C25  SING  N  N   6  
Y8S  C22  C21  SING  N  N   7  
Y8S  C22  C27  SING  N  N   8  
Y8S  C02  N03  SING  N  N   9  
Y8S  C02  C06  SING  N  N  10  
Y8S  C29  C28  DOUB  N  N  11  
Y8S  N03  C04  SING  N  N  12  
Y8S  C21  O20  SING  N  N  13  
Y8S  C27  C26  SING  N  N  14  
Y8S  O31  C19  DOUB  N  N  15  
Y8S  C25  C26  SING  N  N  16  
Y8S  C28  C26  SING  N  N  17  
Y8S  O20  C19  SING  N  N  18  
Y8S  C06  C07  SING  N  N  19  
Y8S  C06  C05  SING  N  N  20  
Y8S  C19  N18  SING  N  N  21  
Y8S  C04  C05  SING  N  N  22  
Y8S  C17  C15  SING  N  N  23  
Y8S  C07  C08  SING  N  N  24  
Y8S  N18  C13  SING  N  N  25  
Y8S  C13  C12  SING  N  N  26  
Y8S  C13  C14  SING  N  N  27  
Y8S  N11  C12  SING  N  N  28  
Y8S  N11  C08  SING  N  N  29  
Y8S  C12  O32  DOUB  N  N  30  
Y8S  C15  C14  SING  N  N  31  
Y8S  C15  C16  SING  N  N  32  
Y8S  C08  C09  SING  N  N  33  
Y8S  C09  O10  SING  N  N  34  
Y8S  N11  H1   SING  N  N  35  
Y8S  C14  H2   SING  N  N  36  
Y8S  C14  H3   SING  N  N  37  
Y8S  N18  H4   SING  N  N  38  
Y8S  C21  H5   SING  N  N  39  
Y8S  C21  H6   SING  N  N  40  
Y8S  C22  H7   SING  N  N  41  
Y8S  C23  H8   SING  N  N  42  
Y8S  C23  H9   SING  N  N  43  
Y8S  C24  H10  SING  N  N  44  
Y8S  C25  H11  SING  N  N  45  
Y8S  C25  H12  SING  N  N  46  
Y8S  C26  H13  SING  N  N  47  
Y8S  C27  H14  SING  N  N  48  
Y8S  C27  H15  SING  N  N  49  
Y8S  C04  H16  SING  N  N  50  
Y8S  C05  H17  SING  N  N  51  
Y8S  C05  H18  SING  N  N  52  
Y8S  C06  H19  SING  N  N  53  
Y8S  C07  H20  SING  N  N  54  
Y8S  C07  H21  SING  N  N  55  
Y8S  C08  H22  SING  N  N  56  
Y8S  C09  S1   SING  N  N  57  
Y8S  C09  H24  SING  N  N  58  
Y8S  C13  H25  SING  N  N  59  
Y8S  C15  H26  SING  N  N  60  
Y8S  C16  H27  SING  N  N  61  
Y8S  C16  H28  SING  N  N  62  
Y8S  C16  H29  SING  N  N  63  
Y8S  C17  H30  SING  N  N  64  
Y8S  C17  H31  SING  N  N  65  
Y8S  C17  H32  SING  N  N  66  
Y8S  C28  H33  SING  N  N  67  
Y8S  C29  H34  SING  N  N  68  
Y8S  C30  H35  SING  N  N  69  
Y8S  C30  H36  SING  N  N  70  
Y8S  O10  H37  SING  N  N  71  
Y8S  S1   O1   DOUB  N  N  72  
Y8S  S1   O2   DOUB  N  N  73  
Y8S  S1   O3   SING  N  N  74  
Y8S  C04  H23  SING  N  N  75  
Y8S  N03  H38  SING  N  N  76  
Y8S  O3   H39  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y8S  InChI             InChI                 1.03   "InChI=1S/C24H39N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h3-4,14-20,23,30H,5-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17+,18-,19-,20-,23+/m0/s1"  
Y8S  InChIKey          InChI                 1.03   ZIWRGXZFSGDQST-REFFYEJJSA-N  
Y8S  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2CC=C[C@H](C1)C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"  
Y8S  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC=C[CH](C1)C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Y8S  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@@H]3CC=C[C@@H](C3)C2"  
Y8S  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC=CC(C3)C2"  
#
_pdbx_chem_comp_identifier.comp_id          Y8S
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-2-[[(1~{R},3~{S},5~{S})-3-bicyclo[3.3.1]non-6-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y8S  "Create component"  2021-02-10  RCSB  
Y8S  "Initial release"   2021-02-17  RCSB  
##
