data_Y8V
#

_chem_comp.id                                   Y8V
_chem_comp.name                                 "(1S,2S)-2-((S)-2-(((((1R,3S,5S)-bicyclo[3.3.1]non-6-en-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H39 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-10
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       529.647
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y8V
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKW
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y8V  C12  C1   C  0  1  N  N  N  10.915  21.518  27.768  -1.322  -0.105   0.661  C12  Y8V   1  
Y8V  C14  C2   C  0  1  N  N  N  13.330  21.857  28.159  -0.638  -0.887  -1.591  C14  Y8V   2  
Y8V  C15  C3   C  0  1  N  N  N  14.663  22.341  27.690   0.314  -0.626  -2.759  C15  Y8V   3  
Y8V  C16  C4   C  0  1  N  N  N  15.728  22.145  28.786   0.068  -1.660  -3.859  C16  Y8V   4  
Y8V  C17  C5   C  0  1  N  N  N  15.099  21.629  26.418   0.066   0.778  -3.315  C17  Y8V   5  
Y8V  C19  C6   C  0  1  N  N  N  11.159  23.946  25.988   2.115   0.308  -0.513  C19  Y8V   6  
Y8V  C21  C7   C  0  1  N  N  N   9.988  25.789  24.966   4.468   0.650  -0.722  C21  Y8V   7  
Y8V  C24  C8   C  0  1  N  N  R   8.264  28.576  24.091   8.270   0.470  -0.168  C24  Y8V   8  
Y8V  C25  C9   C  0  1  N  N  N   8.431  28.472  25.608   8.289   0.949   1.284  C25  Y8V   9  
Y8V  C26  C10  C  0  1  N  N  S   9.859  28.855  25.922   7.121   0.289   2.027  C26  Y8V  10  
Y8V  C02  C11  C  0  1  N  N  N   6.678  20.890  24.736  -3.511   2.609   0.098  C02  Y8V  11  
Y8V  C04  C12  C  0  1  N  N  N   5.675  22.564  26.148  -5.594   3.398  -0.562  C04  Y8V  12  
Y8V  C05  C13  C  0  1  N  N  N   6.848  21.931  26.924  -5.695   3.168   0.962  C05  Y8V  13  
Y8V  C06  C14  C  0  1  N  N  S   7.622  21.025  25.934  -4.460   2.277   1.229  C06  Y8V  14  
Y8V  C07  C15  C  0  1  N  N  N   8.031  19.668  26.552  -4.847   0.797   1.187  C07  Y8V  15  
Y8V  C08  C16  C  0  1  N  N  S   9.118  19.811  27.697  -3.615  -0.061   1.484  C08  Y8V  16  
Y8V  C09  C17  C  0  1  N  N  S   9.411  18.429  28.293  -4.027  -1.532   1.565  C09  Y8V  17  
Y8V  C13  C18  C  0  1  N  N  S  12.222  22.084  27.174  -0.309   0.068  -0.441  C13  Y8V  18  
Y8V  C22  C19  C  0  1  N  N  S  10.373  27.044  24.154   5.772   0.223  -0.046  C22  Y8V  19  
Y8V  C23  C20  C  0  1  N  N  N   9.211  27.637  23.329   6.945   0.802  -0.836  C23  Y8V  20  
Y8V  C27  C21  C  0  1  N  N  N  10.888  28.168  25.031   5.812   0.777   1.383  C27  Y8V  21  
Y8V  C28  C22  C  0  1  N  N  N   9.902  30.309  25.670   7.203  -1.204   1.849  C28  Y8V  22  
Y8V  C29  C23  C  0  1  N  N  N   9.386  30.804  24.552   7.828  -1.769   0.867  C29  Y8V  23  
Y8V  C30  C24  C  0  1  N  N  N   8.477  30.037  23.634   8.558  -1.025  -0.221  C30  Y8V  24  
Y8V  N03  N1   N  0  1  N  N  N   5.610  21.779  24.924  -4.171   3.240  -0.888  N03  Y8V  25  
Y8V  N11  N2   N  0  1  N  N  N  10.356  20.376  27.180  -2.629   0.113   0.414  N11  Y8V  26  
Y8V  N18  N3   N  0  1  N  N  N  12.091  23.517  26.851   1.029  -0.232   0.075  N18  Y8V  27  
Y8V  O01  O1   O  0  1  N  N  N   6.795  20.169  23.789  -2.327   2.348   0.086  O01  Y8V  28  
Y8V  O10  O2   O  0  1  N  N  N   8.182  17.959  28.757  -5.072  -1.683   2.527  O10  Y8V  29  
Y8V  O20  O3   O  0  1  N  N  N  10.965  25.300  25.886   3.344   0.033  -0.039  O20  Y8V  30  
Y8V  O31  O4   O  0  1  N  N  N  10.505  23.184  25.318   1.984   1.044  -1.472  O31  Y8V  31  
Y8V  O32  O5   O  0  1  N  N  N  10.393  22.064  28.707  -0.962  -0.445   1.768  O32  Y8V  32  
Y8V  H1   H1   H  0  1  N  N  N  13.078  22.384  29.091  -1.666  -0.724  -1.916  H1   Y8V  33  
Y8V  H2   H2   H  0  1  N  N  N  13.403  20.777  28.356  -0.523  -1.917  -1.252  H2   Y8V  34  
Y8V  H3   H3   H  0  1  N  N  N  14.590  23.417  27.475   1.345  -0.702  -2.412  H3   Y8V  35  
Y8V  H4   H4   H  0  1  N  N  N  15.410  22.661  29.704  -0.962  -1.584  -4.206  H4   Y8V  36  
Y8V  H5   H5   H  0  1  N  N  N  15.849  21.071  28.992   0.747  -1.474  -4.692  H5   Y8V  37  
Y8V  H6   H6   H  0  1  N  N  N  16.687  22.563  28.444   0.245  -2.660  -3.463  H6   Y8V  38  
Y8V  H7   H7   H  0  1  N  N  N  16.082  22.009  26.103  -0.965   0.854  -3.662  H7   Y8V  39  
Y8V  H8   H8   H  0  1  N  N  N  15.168  20.548  26.609   0.241   1.515  -2.532  H8   Y8V  40  
Y8V  H9   H9   H  0  1  N  N  N  14.362  21.815  25.623   0.744   0.965  -4.148  H9   Y8V  41  
Y8V  H10  H10  H  0  1  N  N  N   9.080  26.027  25.539   4.371   1.735  -0.673  H10  Y8V  42  
Y8V  H11  H11  H  0  1  N  N  N   9.769  24.982  24.251   4.478   0.332  -1.765  H11  Y8V  43  
Y8V  H12  H12  H  0  1  N  N  N   7.231  28.292  23.842   9.063   0.988  -0.707  H12  Y8V  44  
Y8V  H13  H13  H  0  1  N  N  N   7.736  29.159  26.113   9.230   0.664   1.753  H13  Y8V  45  
Y8V  H14  H14  H  0  1  N  N  N   8.234  27.442  25.940   8.177   2.033   1.314  H14  Y8V  46  
Y8V  H15  H15  H  0  1  N  N  N  10.081  28.642  26.978   7.146   0.549   3.086  H15  Y8V  47  
Y8V  H16  H16  H  0  1  N  N  N   5.877  23.622  25.926  -6.187   2.656  -1.096  H16  Y8V  48  
Y8V  H17  H17  H  0  1  N  N  N   4.738  22.482  26.718  -5.931   4.403  -0.815  H17  Y8V  49  
Y8V  H18  H18  H  0  1  N  N  N   6.464  21.331  27.762  -5.622   4.110   1.505  H18  Y8V  50  
Y8V  H19  H19  H  0  1  N  N  N   7.512  22.718  27.311  -6.617   2.644   1.217  H19  Y8V  51  
Y8V  H20  H20  H  0  1  N  N  N   8.531  21.553  25.612  -4.009   2.525   2.190  H20  Y8V  52  
Y8V  H21  H21  H  0  1  N  N  N   7.135  19.192  26.977  -5.615   0.601   1.934  H21  Y8V  53  
Y8V  H22  H22  H  0  1  N  N  N   8.442  19.030  25.756  -5.231   0.551   0.197  H22  Y8V  54  
Y8V  H23  H23  H  0  1  N  N  N   8.708  20.460  28.484  -3.179   0.247   2.434  H23  Y8V  55  
Y8V  H24  H24  H  0  1  N  N  N  10.057  18.603  29.166  -3.168  -2.134   1.863  H24  Y8V  56  
Y8V  S1   S1   S  0  1  N  Y  N   9.840  17.768  27.569  -4.616  -2.085  -0.059  S1   Y8V  57  
Y8V  H26  H26  H  0  1  N  N  N  12.449  21.528  26.253  -0.337   1.095  -0.803  H26  Y8V  58  
Y8V  H27  H27  H  0  1  N  N  N  11.173  26.760  23.454   5.826  -0.865  -0.016  H27  Y8V  59  
Y8V  H28  H28  H  0  1  N  N  N   8.614  26.801  22.937   6.836   1.885  -0.896  H28  Y8V  60  
Y8V  H29  H29  H  0  1  N  N  N   9.645  28.202  22.491   6.938   0.386  -1.844  H29  Y8V  61  
Y8V  H30  H30  H  0  1  N  N  N  11.671  27.753  25.682   4.969   0.388   1.953  H30  Y8V  62  
Y8V  H31  H31  H  0  1  N  N  N  11.326  28.933  24.373   5.770   1.866   1.358  H31  Y8V  63  
Y8V  H32  H32  H  0  1  N  N  N  10.353  30.970  26.395   6.716  -1.836   2.577  H32  Y8V  64  
Y8V  H33  H33  H  0  1  N  N  N   9.635  31.821  24.286   7.812  -2.848   0.817  H33  Y8V  65  
Y8V  H34  H34  H  0  1  N  N  N   8.918  30.030  22.627   8.258  -1.411  -1.195  H34  Y8V  66  
Y8V  H35  H35  H  0  1  N  N  N   7.500  30.542  23.603   9.627  -1.187  -0.088  H35  Y8V  67  
Y8V  H36  H36  H  0  1  N  N  N   4.861  21.867  24.267  -3.760   3.552  -1.709  H36  Y8V  68  
Y8V  H37  H37  H  0  1  N  N  N  10.810  19.946  26.400  -2.917   0.385  -0.471  H37  Y8V  69  
Y8V  H38  H38  H  0  1  N  N  N  12.706  24.178  27.282   1.134  -0.820   0.840  H38  Y8V  70  
Y8V  H39  H39  H  0  1  N  N  N   8.297  17.098  29.142  -5.869  -1.174   2.325  H39  Y8V  71  
Y8V  O1   O6   O  0  1  N  Y  N       ?       ?       ?  -5.784  -1.368  -0.437  O1   Y8V  72  
Y8V  O2   O7   O  0  1  N  Y  N       ?       ?       ?  -3.527  -2.238  -0.959  O2   Y8V  73  
Y8V  O3   O8   O  0  1  N  Y  N       ?       ?       ?  -5.109  -3.505   0.179  O3   Y8V  74  
Y8V  H25  H25  H  0  1  N  Y  N       ?       ?       ?  -5.459  -3.938  -0.612  H25  Y8V  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y8V  C23  C24  SING  N  N   1  
Y8V  C23  C22  SING  N  N   2  
Y8V  C30  C24  SING  N  N   3  
Y8V  C30  C29  SING  N  N   4  
Y8V  O01  C02  DOUB  N  N   5  
Y8V  C24  C25  SING  N  N   6  
Y8V  C22  C21  SING  N  N   7  
Y8V  C22  C27  SING  N  N   8  
Y8V  C29  C28  DOUB  N  N   9  
Y8V  C02  N03  SING  N  N  10  
Y8V  C02  C06  SING  N  N  11  
Y8V  N03  C04  SING  N  N  12  
Y8V  C21  O20  SING  N  N  13  
Y8V  C27  C26  SING  N  N  14  
Y8V  O31  C19  DOUB  N  N  15  
Y8V  C25  C26  SING  N  N  16  
Y8V  C28  C26  SING  N  N  17  
Y8V  O20  C19  SING  N  N  18  
Y8V  C06  C07  SING  N  N  19  
Y8V  C06  C05  SING  N  N  20  
Y8V  C19  N18  SING  N  N  21  
Y8V  C04  C05  SING  N  N  22  
Y8V  C17  C15  SING  N  N  23  
Y8V  C07  C08  SING  N  N  24  
Y8V  N18  C13  SING  N  N  25  
Y8V  C13  C12  SING  N  N  26  
Y8V  C13  C14  SING  N  N  27  
Y8V  N11  C08  SING  N  N  28  
Y8V  N11  C12  SING  N  N  29  
Y8V  C15  C14  SING  N  N  30  
Y8V  C15  C16  SING  N  N  31  
Y8V  C08  C09  SING  N  N  32  
Y8V  C12  O32  DOUB  N  N  33  
Y8V  C09  O10  SING  N  N  34  
Y8V  C14  H1   SING  N  N  35  
Y8V  C14  H2   SING  N  N  36  
Y8V  C15  H3   SING  N  N  37  
Y8V  C16  H4   SING  N  N  38  
Y8V  C16  H5   SING  N  N  39  
Y8V  C16  H6   SING  N  N  40  
Y8V  C17  H7   SING  N  N  41  
Y8V  C17  H8   SING  N  N  42  
Y8V  C17  H9   SING  N  N  43  
Y8V  C21  H10  SING  N  N  44  
Y8V  C21  H11  SING  N  N  45  
Y8V  C24  H12  SING  N  N  46  
Y8V  C25  H13  SING  N  N  47  
Y8V  C25  H14  SING  N  N  48  
Y8V  C26  H15  SING  N  N  49  
Y8V  C04  H16  SING  N  N  50  
Y8V  C04  H17  SING  N  N  51  
Y8V  C05  H18  SING  N  N  52  
Y8V  C05  H19  SING  N  N  53  
Y8V  C06  H20  SING  N  N  54  
Y8V  C07  H21  SING  N  N  55  
Y8V  C07  H22  SING  N  N  56  
Y8V  C08  H23  SING  N  N  57  
Y8V  C09  H24  SING  N  N  58  
Y8V  C09  S1   SING  N  N  59  
Y8V  C13  H26  SING  N  N  60  
Y8V  C22  H27  SING  N  N  61  
Y8V  C23  H28  SING  N  N  62  
Y8V  C23  H29  SING  N  N  63  
Y8V  C27  H30  SING  N  N  64  
Y8V  C27  H31  SING  N  N  65  
Y8V  C28  H32  SING  N  N  66  
Y8V  C29  H33  SING  N  N  67  
Y8V  C30  H34  SING  N  N  68  
Y8V  C30  H35  SING  N  N  69  
Y8V  N03  H36  SING  N  N  70  
Y8V  N11  H37  SING  N  N  71  
Y8V  N18  H38  SING  N  N  72  
Y8V  O10  H39  SING  N  N  73  
Y8V  S1   O1   DOUB  N  N  74  
Y8V  S1   O2   DOUB  N  N  75  
Y8V  S1   O3   SING  N  N  76  
Y8V  O3   H25  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y8V  InChI             InChI                 1.03   "InChI=1S/C24H39N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h3-4,14-20,23,30H,5-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17+,18-,19-,20-,23-/m0/s1"  
Y8V  InChIKey          InChI                 1.03   ZIWRGXZFSGDQST-UIEASHSYSA-N  
Y8V  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2CC=C[C@H](C1)C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"  
Y8V  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC=C[CH](C1)C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Y8V  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@@H]3CC=C[C@@H](C3)C2"  
Y8V  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC=CC(C3)C2"  
#
_pdbx_chem_comp_identifier.comp_id          Y8V
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(1~{S},2~{S})-2-[[(2~{S})-2-[[(1~{R},3~{S},5~{S})-3-bicyclo[3.3.1]non-6-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y8V  "Create component"  2021-02-10  RCSB  
Y8V  "Initial release"   2021-02-17  RCSB  
##
