data_Y8Y
#

_chem_comp.id                                   Y8Y
_chem_comp.name                                 "(1R,2S)-2-((S)-2-(((((1R,3r,5S)-bicyclo[3.3.1]nonan-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H41 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-10
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       531.663
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y8Y
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y8Y  N11  N1   N  0  1  N  N  N  -18.801  -5.735   4.871  -2.651  -0.266   0.556  N11  Y8Y   1  
Y8Y  C12  C1   C  0  1  N  N  N  -19.563  -6.103   3.769  -1.465   0.103   0.031  C12  Y8Y   2  
Y8Y  C14  C2   C  0  1  N  N  N  -21.834  -7.296   4.072  -0.699   2.093   1.296  C14  Y8Y   3  
Y8Y  C15  C3   C  0  1  N  N  N  -23.384  -7.198   4.098  -2.007   2.142   2.089  C15  Y8Y   4  
Y8Y  C16  C4   C  0  1  N  N  N  -23.877  -5.936   4.825  -1.813   1.443   3.436  C16  Y8Y   5  
Y8Y  O20  O1   O  0  1  N  N  N  -21.146  -4.102   0.481   3.221   0.314   0.277  O20  Y8Y   6  
Y8Y  C23  C5   C  0  1  N  N  N  -21.288  -3.405  -2.719   6.860  -0.229   1.066  C23  Y8Y   7  
Y8Y  C24  C6   C  0  1  N  N  S  -22.140  -3.064  -3.965   8.177  -0.101   0.313  C24  Y8Y   8  
Y8Y  C25  C7   C  0  1  N  N  N  -22.110  -1.584  -4.263   8.267   1.270  -0.356  C25  Y8Y   9  
Y8Y  C26  C8   C  0  1  N  N  R  -22.521  -0.808  -3.034   7.129   1.378  -1.371  C26  Y8Y  10  
Y8Y  C27  C9   C  0  1  N  N  N  -21.617  -1.106  -1.817   5.783   1.272  -0.672  C27  Y8Y  11  
Y8Y  C28  C10  C  0  1  N  N  N  -23.986  -1.150  -2.708   7.298   0.320  -2.453  C28  Y8Y  12  
Y8Y  C29  C11  C  0  1  N  N  N  -24.349  -2.654  -2.757   7.380  -1.089  -1.885  C29  Y8Y  13  
Y8Y  C02  C12  C  0  1  N  N  N  -16.239  -2.240   3.702  -5.121   2.306  -1.867  C02  Y8Y  14  
Y8Y  C04  C13  C  0  1  N  N  N  -15.132  -3.241   1.885  -6.918   2.193  -0.399  C04  Y8Y  15  
Y8Y  C05  C14  C  0  1  N  N  N  -16.178  -4.261   2.474  -6.047   0.953  -0.095  C05  Y8Y  16  
Y8Y  C06  C15  C  0  1  N  N  S  -16.847  -3.642   3.702  -4.715   1.326  -0.788  C06  Y8Y  17  
Y8Y  C07  C16  C  0  1  N  N  N  -16.569  -4.512   4.985  -4.068   0.086  -1.407  C07  Y8Y  18  
Y8Y  C08  C17  C  0  1  N  N  S  -17.353  -5.867   5.009  -3.667  -0.888  -0.297  C08  Y8Y  19  
Y8Y  C09  C18  C  0  1  N  N  R  -17.021  -6.624   6.319  -3.099  -2.165  -0.919  C09  Y8Y  20  
Y8Y  C13  C19  C  0  1  N  N  S  -21.126  -5.929   3.727  -0.380   0.643   0.927  C13  Y8Y  21  
Y8Y  C17  C20  C  0  1  N  N  N  -24.074  -8.452   4.673  -2.407   3.600   2.324  C17  Y8Y  22  
Y8Y  C19  C21  C  0  1  N  N  N  -21.017  -4.296   1.834   2.050   0.470   0.924  C19  Y8Y  23  
Y8Y  C21  C22  C  0  1  N  N  N  -20.707  -2.969  -0.204   4.414   0.192   1.095  C21  Y8Y  24  
Y8Y  C22  C23  C  0  1  N  N  R  -21.620  -2.612  -1.420   5.647   0.021   0.183  C22  Y8Y  25  
Y8Y  C30  C24  C  0  1  N  N  N  -23.585  -3.513  -3.761   8.349  -1.205  -0.720  C30  Y8Y  26  
Y8Y  N03  N2   N  0  1  N  N  N  -15.306  -2.021   2.681  -6.358   2.774  -1.626  N03  Y8Y  27  
Y8Y  N18  N3   N  0  1  N  N  N  -21.590  -5.432   2.420   0.904   0.590   0.225  N18  Y8Y  28  
Y8Y  O01  O2   O  0  1  N  N  N  -16.533  -1.347   4.492  -4.428   2.627  -2.809  O01  Y8Y  29  
Y8Y  O10  O3   O  0  1  N  N  N  -17.585  -7.906   6.234  -4.076  -2.750  -1.781  O10  Y8Y  30  
Y8Y  O31  O4   O  0  1  N  N  N  -20.398  -3.485   2.504   2.027   0.504   2.138  O31  Y8Y  31  
Y8Y  O32  O5   O  0  1  N  N  N  -19.006  -6.574   2.774  -1.271   0.000  -1.162  O32  Y8Y  32  
Y8Y  H1   H1   H  0  1  N  N  N  -19.293  -5.340   5.647  -2.829  -0.123   1.498  H1   Y8Y  33  
Y8Y  H2   H2   H  0  1  N  N  N  -21.544  -8.040   3.315  -0.803   2.686   0.387  H2   Y8Y  34  
Y8Y  H3   H3   H  0  1  N  N  N  -21.489  -7.627   5.062   0.109   2.500   1.904  H3   Y8Y  35  
Y8Y  H4   H4   H  0  1  N  N  N  -23.711  -7.109   3.051  -2.792   1.636   1.527  H4   Y8Y  36  
Y8Y  H5   H5   H  0  1  N  N  N  -24.977  -5.913   4.816  -1.483   0.417   3.269  H5   Y8Y  37  
Y8Y  H6   H6   H  0  1  N  N  N  -23.519  -5.949   5.865  -1.061   1.976   4.017  H6   Y8Y  38  
Y8Y  H7   H7   H  0  1  N  N  N  -23.488  -5.043   4.314  -2.757   1.437   3.982  H7   Y8Y  39  
Y8Y  H8   H8   H  0  1  N  N  N  -21.423  -4.475  -2.503   6.790  -1.236   1.496  H8   Y8Y  40  
Y8Y  H9   H9   H  0  1  N  N  N  -20.235  -3.212  -2.970   6.853   0.486   1.898  H9   Y8Y  41  
Y8Y  H10  H10  H  0  1  N  N  N  -21.724  -3.607  -4.827   9.001  -0.177   1.041  H10  Y8Y  42  
Y8Y  H11  H11  H  0  1  N  N  N  -21.091  -1.291  -4.557   8.165   2.052   0.395  H11  Y8Y  43  
Y8Y  H12  H12  H  0  1  N  N  N  -22.807  -1.362  -5.085   9.224   1.369  -0.865  H12  Y8Y  44  
Y8Y  H13  H13  H  0  1  N  N  N  -22.457   0.267  -3.257   7.195   2.371  -1.847  H13  Y8Y  45  
Y8Y  H14  H14  H  0  1  N  N  N  -20.587  -0.809  -2.063   5.637   2.156  -0.038  H14  Y8Y  46  
Y8Y  H15  H15  H  0  1  N  N  N  -21.974  -0.516  -0.960   4.986   1.277  -1.427  H15  Y8Y  47  
Y8Y  H16  H16  H  0  1  N  N  N  -24.202  -0.783  -1.694   6.453   0.380  -3.148  H16  Y8Y  48  
Y8Y  H17  H17  H  0  1  N  N  N  -24.625  -0.624  -3.432   8.211   0.533  -3.022  H17  Y8Y  49  
Y8Y  H18  H18  H  0  1  N  N  N  -25.419  -2.730  -3.000   6.396  -1.459  -1.616  H18  Y8Y  50  
Y8Y  H19  H19  H  0  1  N  N  N  -24.169  -3.073  -1.756   7.743  -1.755  -2.693  H19  Y8Y  51  
Y8Y  H20  H20  H  0  1  N  N  N  -14.109  -3.630   1.992  -7.953   1.896  -0.562  H20  Y8Y  52  
Y8Y  H21  H21  H  0  1  N  N  N  -16.941  -4.486   1.714  -5.907   0.828   0.979  H21  Y8Y  53  
Y8Y  H22  H22  H  0  1  N  N  N  -15.664  -5.189   2.764  -6.478   0.055  -0.537  H22  Y8Y  54  
Y8Y  H23  H23  H  0  1  N  N  N  -17.933  -3.576   3.539  -4.036   1.799  -0.079  H23  Y8Y  55  
Y8Y  H24  H24  H  0  1  N  N  N  -15.492  -4.733   5.028  -4.778  -0.399  -2.076  H24  Y8Y  56  
Y8Y  H25  H25  H  0  1  N  N  N  -16.859  -3.927   5.870  -3.181   0.381  -1.968  H25  Y8Y  57  
Y8Y  H26  H26  H  0  1  N  N  N  -16.977  -6.475   4.173  -4.543  -1.135   0.304  H26  Y8Y  58  
Y8Y  S1   S1   S  0  1  N  Y  N  -17.411  -6.098   7.165  -2.670  -3.339   0.395  S1   Y8Y  59  
Y8Y  H28  H28  H  0  1  N  N  N  -15.927  -6.738   6.336  -2.205  -1.922  -1.494  H28  Y8Y  60  
Y8Y  H29  H29  H  0  1  N  N  N  -21.404  -5.203   4.505  -0.324   0.041   1.833  H29  Y8Y  61  
Y8Y  H30  H30  H  0  1  N  N  N  -25.165  -8.310   4.659  -2.546   4.098   1.364  H30  Y8Y  62  
Y8Y  H31  H31  H  0  1  N  N  N  -23.811  -9.328   4.062  -3.339   3.634   2.889  H31  Y8Y  63  
Y8Y  H32  H32  H  0  1  N  N  N  -23.738  -8.613   5.708  -1.623   4.106   2.886  H32  Y8Y  64  
Y8Y  H33  H33  H  0  1  N  N  N  -19.687  -3.153  -0.571   4.533   1.090   1.701  H33  Y8Y  65  
Y8Y  H34  H34  H  0  1  N  N  N  -20.698  -2.117   0.492   4.321  -0.677   1.746  H34  Y8Y  66  
Y8Y  H35  H35  H  0  1  N  N  N  -22.651  -2.871  -1.137   5.454  -0.848  -0.446  H35  Y8Y  67  
Y8Y  H36  H36  H  0  1  N  N  N  -24.105  -3.465  -4.729   9.377  -1.177  -1.104  H36  Y8Y  68  
Y8Y  H37  H37  H  0  1  N  N  N  -23.580  -4.552  -3.399   8.210  -2.178  -0.232  H37  Y8Y  69  
Y8Y  H38  H38  H  0  1  N  N  N  -22.326  -5.913   1.944   0.930   0.640  -0.744  H38  Y8Y  70  
Y8Y  H39  H39  H  0  1  N  N  N  -17.394  -8.390   7.029  -4.352  -2.177  -2.509  H39  Y8Y  71  
Y8Y  O1   O6   O  0  1  N  Y  N        ?       ?       ?  -3.778  -3.543   1.263  O1   Y8Y  72  
Y8Y  O2   O7   O  0  1  N  Y  N        ?       ?       ?  -1.944  -4.439  -0.136  O2   Y8Y  73  
Y8Y  O3   O8   O  0  1  N  Y  N        ?       ?       ?  -1.654  -2.598   1.252  O3   Y8Y  74  
Y8Y  H27  H27  H  0  1  N  N  N  -15.340  -3.043   0.823  -6.854   2.909   0.420  H27  Y8Y  75  
Y8Y  H40  H40  H  0  1  N  N  N  -14.828  -1.158   2.518  -6.822   3.411  -2.191  H40  Y8Y  76  
Y8Y  H41  H41  H  0  1  N  Y  N        ?       ?       ?  -1.328  -3.108   2.006  H41  Y8Y  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y8Y  C25  C24  SING  N  N   1  
Y8Y  C25  C26  SING  N  N   2  
Y8Y  C24  C30  SING  N  N   3  
Y8Y  C24  C23  SING  N  N   4  
Y8Y  C30  C29  SING  N  N   5  
Y8Y  C26  C28  SING  N  N   6  
Y8Y  C26  C27  SING  N  N   7  
Y8Y  C29  C28  SING  N  N   8  
Y8Y  C23  C22  SING  N  N   9  
Y8Y  C27  C22  SING  N  N  10  
Y8Y  C22  C21  SING  N  N  11  
Y8Y  C21  O20  SING  N  N  12  
Y8Y  O20  C19  SING  N  N  13  
Y8Y  C19  N18  SING  N  N  14  
Y8Y  C19  O31  DOUB  N  N  15  
Y8Y  C04  C05  SING  N  N  16  
Y8Y  C04  N03  SING  N  N  17  
Y8Y  N18  C13  SING  N  N  18  
Y8Y  C05  C06  SING  N  N  19  
Y8Y  N03  C02  SING  N  N  20  
Y8Y  O32  C12  DOUB  N  N  21  
Y8Y  C06  C02  SING  N  N  22  
Y8Y  C06  C07  SING  N  N  23  
Y8Y  C02  O01  DOUB  N  N  24  
Y8Y  C13  C12  SING  N  N  25  
Y8Y  C13  C14  SING  N  N  26  
Y8Y  C12  N11  SING  N  N  27  
Y8Y  C14  C15  SING  N  N  28  
Y8Y  C15  C17  SING  N  N  29  
Y8Y  C15  C16  SING  N  N  30  
Y8Y  N11  C08  SING  N  N  31  
Y8Y  C07  C08  SING  N  N  32  
Y8Y  C08  C09  SING  N  N  33  
Y8Y  O10  C09  SING  N  N  34  
Y8Y  N11  H1   SING  N  N  35  
Y8Y  C14  H2   SING  N  N  36  
Y8Y  C14  H3   SING  N  N  37  
Y8Y  C15  H4   SING  N  N  38  
Y8Y  C16  H5   SING  N  N  39  
Y8Y  C16  H6   SING  N  N  40  
Y8Y  C16  H7   SING  N  N  41  
Y8Y  C23  H8   SING  N  N  42  
Y8Y  C23  H9   SING  N  N  43  
Y8Y  C24  H10  SING  N  N  44  
Y8Y  C25  H11  SING  N  N  45  
Y8Y  C25  H12  SING  N  N  46  
Y8Y  C26  H13  SING  N  N  47  
Y8Y  C27  H14  SING  N  N  48  
Y8Y  C27  H15  SING  N  N  49  
Y8Y  C28  H16  SING  N  N  50  
Y8Y  C28  H17  SING  N  N  51  
Y8Y  C29  H18  SING  N  N  52  
Y8Y  C29  H19  SING  N  N  53  
Y8Y  C04  H20  SING  N  N  54  
Y8Y  C05  H21  SING  N  N  55  
Y8Y  C05  H22  SING  N  N  56  
Y8Y  C06  H23  SING  N  N  57  
Y8Y  C07  H24  SING  N  N  58  
Y8Y  C07  H25  SING  N  N  59  
Y8Y  C08  H26  SING  N  N  60  
Y8Y  C09  S1   SING  N  N  61  
Y8Y  C09  H28  SING  N  N  62  
Y8Y  C13  H29  SING  N  N  63  
Y8Y  C17  H30  SING  N  N  64  
Y8Y  C17  H31  SING  N  N  65  
Y8Y  C17  H32  SING  N  N  66  
Y8Y  C21  H33  SING  N  N  67  
Y8Y  C21  H34  SING  N  N  68  
Y8Y  C22  H35  SING  N  N  69  
Y8Y  C30  H36  SING  N  N  70  
Y8Y  C30  H37  SING  N  N  71  
Y8Y  N18  H38  SING  N  N  72  
Y8Y  O10  H39  SING  N  N  73  
Y8Y  S1   O1   DOUB  N  N  74  
Y8Y  S1   O2   DOUB  N  N  75  
Y8Y  S1   O3   SING  N  N  76  
Y8Y  C04  H27  SING  N  N  77  
Y8Y  N03  H40  SING  N  N  78  
Y8Y  O3   H41  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y8Y  InChI             InChI                 1.03   "InChI=1S/C24H41N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h14-20,23,30H,3-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17+,18-,19-,20-,23+/m0/s1"  
Y8Y  InChIKey          InChI                 1.03   PGYROSRJIVXTOE-REFFYEJJSA-N  
Y8Y  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2CCC[C@@H](C2)C1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"  
Y8Y  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CCC[CH](C2)C1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Y8Y  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2C[C@@H]3CCC[C@@H](C3)C2"  
Y8Y  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCCC(C3)C2"  
#
_pdbx_chem_comp_identifier.comp_id          Y8Y
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-2-[[(1~{R},5~{S})-3-bicyclo[3.3.1]nonanyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y8Y  "Create component"  2021-02-10  RCSB  
Y8Y  "Initial release"   2021-02-17  RCSB  
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