data_Y91
#

_chem_comp.id                                   Y91
_chem_comp.name                                 "(1S,2S)-2-((S)-2-(((((1R,3r,5S)-bicyclo[3.3.1]nonan-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H41 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-10
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       531.663
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y91
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y91  C17  C1   C  0  1  N  N  N  -24.085  -8.464   4.695  -2.054   2.058   3.214  C17  Y91   1  
Y91  C13  C2   C  0  1  N  N  S  -21.156  -5.951   3.700  -0.197   0.132   0.449  C13  Y91   2  
Y91  C14  C3   C  0  1  N  N  N  -21.862  -7.319   4.028  -0.434   1.204   1.515  C14  Y91   3  
Y91  C15  C4   C  0  1  N  N  N  -23.409  -7.215   4.096  -1.740   0.909   2.254  C15  Y91   4  
Y91  C21  C5   C  0  1  N  N  N  -20.694  -2.953  -0.207   4.526  -0.795   0.673  C21  Y91   5  
Y91  C23  C6   C  0  1  N  N  N  -21.296  -3.406  -2.712   6.969  -1.250   0.651  C23  Y91   6  
Y91  C24  C7   C  0  1  N  N  S  -22.145  -3.065  -3.959   8.361  -0.763   0.276  C24  Y91   7  
Y91  C26  C8   C  0  1  N  N  R  -22.525  -0.808  -3.031   7.501   1.520  -0.140  C26  Y91   8  
Y91  C12  C9   C  0  1  N  N  N  -19.604  -6.128   3.761  -1.223   0.277  -0.646  C12  Y91   9  
Y91  C16  C10  C  0  1  N  N  N  -23.880  -5.949   4.831  -1.595  -0.392   3.046  C16  Y91  10  
Y91  C09  C11  C  0  1  N  N  S  -17.079  -6.600   6.260  -4.044   1.354  -1.668  C09  Y91  11  
Y91  C08  C12  C  0  1  N  N  S  -17.408  -5.792   4.976  -3.473  -0.057  -1.518  C08  Y91  12  
Y91  C06  C13  C  0  1  N  N  S  -16.821  -3.546   3.708  -4.056  -2.464  -1.189  C06  Y91  13  
Y91  C02  C14  C  0  1  N  N  N  -16.125  -2.182   3.712  -3.108  -2.644  -0.024  C02  Y91  14  
Y91  C04  C15  C  0  1  N  N  N  -15.113  -3.222   1.863  -5.106  -3.638   0.620  C04  Y91  15  
Y91  C07  C16  C  0  1  N  N  N  -16.632  -4.421   5.007  -4.608  -1.037  -1.215  C07  Y91  16  
Y91  C05  C17  C  0  1  N  N  N  -16.158  -4.215   2.501  -5.191  -3.478  -0.914  C05  Y91  17  
Y91  C19  C18  C  0  1  N  N  N  -20.998  -4.309   1.811   2.196  -0.324   0.461  C19  Y91  18  
Y91  C22  C19  C  0  1  N  N  R  -21.624  -2.610  -1.413   5.867  -0.412   0.016  C22  Y91  19  
Y91  C25  C20  C  0  1  N  N  N  -22.113  -1.585  -4.259   8.522   0.709   0.658  C25  Y91  20  
Y91  C27  C21  C  0  1  N  N  N  -21.625  -1.104  -1.813   6.088   1.082   0.215  C27  Y91  21  
Y91  C28  C22  C  0  1  N  N  N  -23.990  -1.149  -2.706   7.779   1.389  -1.630  C28  Y91  22  
Y91  C29  C23  C  0  1  N  N  N  -24.348  -2.654  -2.747   7.836  -0.052  -2.105  C29  Y91  23  
Y91  C30  C24  C  0  1  N  N  N  -23.589  -3.512  -3.754   8.656  -0.958  -1.203  C30  Y91  24  
Y91  N03  N1   N  0  1  N  N  N  -15.199  -2.007   2.678  -3.720  -3.309   0.971  N03  Y91  25  
Y91  N11  N2   N  0  1  N  N  N  -18.848  -5.666   4.827  -2.503  -0.078  -0.421  N11  Y91  26  
Y91  N18  N3   N  0  1  N  N  N  -21.601  -5.439   2.386   1.145   0.293  -0.115  N18  Y91  27  
Y91  O01  O1   O  0  1  N  N  N  -16.345  -1.280   4.516  -1.962  -2.247   0.007  O01  Y91  28  
Y91  O10  O2   O  0  1  N  N  N  -15.695  -6.704   6.424  -5.073   1.349  -2.660  O10  Y91  29  
Y91  O20  O3   O  0  1  N  N  N  -21.036  -4.141   0.442   3.443  -0.097   0.005  O20  Y91  30  
Y91  O31  O4   O  0  1  N  N  N  -20.427  -3.481   2.503   2.019  -1.085   1.391  O31  Y91  31  
Y91  O32  O5   O  0  1  N  N  N  -19.047  -6.694   2.817  -0.896   0.713  -1.729  O32  Y91  32  
Y91  H1   H1   H  0  1  N  N  N  -25.175  -8.319   4.711  -2.157   2.985   2.650  H1   Y91  33  
Y91  H2   H2   H  0  1  N  N  N  -23.841  -9.343   4.080  -2.985   1.847   3.741  H2   Y91  34  
Y91  H3   H3   H  0  1  N  N  N  -23.721  -8.622   5.721  -1.243   2.160   3.936  H3   Y91  35  
Y91  H4   H4   H  0  1  N  N  N  -21.444  -5.230   4.479  -0.285  -0.855   0.901  H4   Y91  36  
Y91  H5   H5   H  0  1  N  N  N  -21.596  -8.045   3.246   0.394   1.201   2.224  H5   Y91  37  
Y91  H6   H6   H  0  1  N  N  N  -21.494  -7.677   5.001  -0.499   2.182   1.038  H6   Y91  38  
Y91  H7   H7   H  0  1  N  N  N  -23.764  -7.130   3.058  -2.551   0.807   1.533  H7   Y91  39  
Y91  H8   H8   H  0  1  N  N  N  -19.662  -3.044  -0.578   4.374  -1.871   0.585  H8   Y91  40  
Y91  H9   H9   H  0  1  N  N  N  -20.751  -2.130   0.521   4.544  -0.516   1.726  H9   Y91  41  
Y91  H10  H10  H  0  1  N  N  N  -21.436  -4.475  -2.494   6.854  -2.293   0.332  H10  Y91  42  
Y91  H11  H11  H  0  1  N  N  N  -20.242  -3.218  -2.963   6.858  -1.220   1.741  H11  Y91  43  
Y91  H12  H12  H  0  1  N  N  N  -21.729  -3.609  -4.820   9.097  -1.344   0.856  H12  Y91  44  
Y91  H13  H13  H  0  1  N  N  N  -22.461   0.267  -3.255   7.616   2.579   0.142  H13  Y91  45  
Y91  H14  H14  H  0  1  N  N  N  -24.980  -5.924   4.851  -2.547  -0.639   3.517  H14  Y91  46  
Y91  H15  H15  H  0  1  N  N  N  -23.495  -5.959   5.861  -1.305  -1.198   2.371  H15  Y91  47  
Y91  H16  H16  H  0  1  N  N  N  -23.502  -5.059   4.307  -0.831  -0.268   3.813  H16  Y91  48  
Y91  H17  H17  H  0  1  N  N  N  -17.486  -7.610   6.106  -3.250   2.037  -1.971  H17  Y91  49  
Y91  S1   S1   S  0  1  N  Y  N  -17.488  -6.085   7.104  -4.736   1.898  -0.082  S1   Y91  50  
Y91  H19  H19  H  0  1  N  N  N  -17.017  -6.364   4.121  -2.979  -0.349  -2.445  H19  Y91  51  
Y91  H20  H20  H  0  1  N  N  N  -17.896  -3.414   3.516  -3.555  -2.695  -2.129  H20  Y91  52  
Y91  H21  H21  H  0  1  N  N  N  -14.099  -3.646   1.907  -5.793  -2.949   1.110  H21  Y91  53  
Y91  H22  H22  H  0  1  N  N  N  -15.559  -4.633   5.128  -5.044  -0.799  -0.245  H22  Y91  54  
Y91  H23  H23  H  0  1  N  N  N  -16.990  -3.840   5.870  -5.373  -0.957  -1.987  H23  Y91  55  
Y91  H24  H24  H  0  1  N  N  N  -16.925  -4.470   1.755  -6.158  -3.071  -1.211  H24  Y91  56  
Y91  H25  H25  H  0  1  N  N  N  -15.643  -5.131   2.826  -4.997  -4.426  -1.417  H25  Y91  57  
Y91  H26  H26  H  0  1  N  N  N  -22.651  -2.872  -1.119   5.780  -0.643  -1.045  H26  Y91  58  
Y91  H27  H27  H  0  1  N  N  N  -21.094  -1.293  -4.552   8.338   0.834   1.724  H27  Y91  59  
Y91  H28  H28  H  0  1  N  N  N  -22.808  -1.364  -5.082   9.529   1.044   0.415  H28  Y91  60  
Y91  H29  H29  H  0  1  N  N  N  -20.595  -0.805  -2.056   5.885   1.337   1.262  H29  Y91  61  
Y91  H30  H30  H  0  1  N  N  N  -21.986  -0.514  -0.958   5.373   1.636  -0.405  H30  Y91  62  
Y91  H31  H31  H  0  1  N  N  N  -24.209  -0.776  -1.695   6.995   1.920  -2.187  H31  Y91  63  
Y91  H32  H32  H  0  1  N  N  N  -24.629  -0.629  -3.435   8.732   1.883  -1.861  H32  Y91  64  
Y91  H33  H33  H  0  1  N  N  N  -25.420  -2.735  -2.981   6.838  -0.454  -2.261  H33  Y91  65  
Y91  H34  H34  H  0  1  N  N  N  -24.159  -3.069  -1.746   8.315  -0.056  -3.106  H34  Y91  66  
Y91  H35  H35  H  0  1  N  N  N  -24.111  -3.460  -4.721   9.724  -0.772  -1.382  H35  Y91  67  
Y91  H36  H36  H  0  1  N  N  N  -23.585  -4.552  -3.394   8.461  -2.005  -1.471  H36  Y91  68  
Y91  H37  H37  H  0  1  N  N  N  -19.340  -5.202   5.563  -2.783  -0.347   0.468  H37  Y91  69  
Y91  H38  H38  H  0  1  N  N  N  -22.341  -5.904   1.900   1.278   0.843  -0.903  H38  Y91  70  
Y91  H39  H39  H  0  1  N  N  N  -15.505  -7.200   7.212  -5.813   0.762  -2.455  H39  Y91  71  
Y91  O1   O6   O  0  1  N  Y  N        ?       ?       ?  -5.825   1.068   0.298  O1   Y91  72  
Y91  O2   O7   O  0  1  N  Y  N        ?       ?       ?  -3.696   2.207   0.836  O2   Y91  73  
Y91  O3   O8   O  0  1  N  Y  N        ?       ?       ?  -5.378   3.243  -0.388  O3   Y91  74  
Y91  H18  H18  H  0  1  N  N  N  -15.374  -3.005   0.817  -5.333  -4.665   0.905  H18  Y91  75  
Y91  H40  H40  H  0  1  N  N  N  -14.672  -1.173   2.518  -3.299  -3.540   1.814  H40  Y91  76  
Y91  H41  H41  H  0  1  N  Y  N        ?       ?       ?  -5.796   3.663   0.376  H41  Y91  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y91  C25  C24  SING  N  N   1  
Y91  C25  C26  SING  N  N   2  
Y91  C24  C30  SING  N  N   3  
Y91  C24  C23  SING  N  N   4  
Y91  C30  C29  SING  N  N   5  
Y91  C26  C28  SING  N  N   6  
Y91  C26  C27  SING  N  N   7  
Y91  C29  C28  SING  N  N   8  
Y91  C23  C22  SING  N  N   9  
Y91  C27  C22  SING  N  N  10  
Y91  C22  C21  SING  N  N  11  
Y91  C21  O20  SING  N  N  12  
Y91  O20  C19  SING  N  N  13  
Y91  C19  N18  SING  N  N  14  
Y91  C19  O31  DOUB  N  N  15  
Y91  C04  C05  SING  N  N  16  
Y91  C04  N03  SING  N  N  17  
Y91  N18  C13  SING  N  N  18  
Y91  C05  C06  SING  N  N  19  
Y91  N03  C02  SING  N  N  20  
Y91  O32  C12  DOUB  N  N  21  
Y91  C13  C12  SING  N  N  22  
Y91  C13  C14  SING  N  N  23  
Y91  C06  C02  SING  N  N  24  
Y91  C06  C07  SING  N  N  25  
Y91  C02  O01  DOUB  N  N  26  
Y91  C12  N11  SING  N  N  27  
Y91  C14  C15  SING  N  N  28  
Y91  C15  C17  SING  N  N  29  
Y91  C15  C16  SING  N  N  30  
Y91  N11  C08  SING  N  N  31  
Y91  C08  C07  SING  N  N  32  
Y91  C08  C09  SING  N  N  33  
Y91  C09  O10  SING  N  N  34  
Y91  C17  H1   SING  N  N  35  
Y91  C17  H2   SING  N  N  36  
Y91  C17  H3   SING  N  N  37  
Y91  C13  H4   SING  N  N  38  
Y91  C14  H5   SING  N  N  39  
Y91  C14  H6   SING  N  N  40  
Y91  C15  H7   SING  N  N  41  
Y91  C21  H8   SING  N  N  42  
Y91  C21  H9   SING  N  N  43  
Y91  C23  H10  SING  N  N  44  
Y91  C23  H11  SING  N  N  45  
Y91  C24  H12  SING  N  N  46  
Y91  C26  H13  SING  N  N  47  
Y91  C16  H14  SING  N  N  48  
Y91  C16  H15  SING  N  N  49  
Y91  C16  H16  SING  N  N  50  
Y91  C09  H17  SING  N  N  51  
Y91  C09  S1   SING  N  N  52  
Y91  C08  H19  SING  N  N  53  
Y91  C06  H20  SING  N  N  54  
Y91  C04  H21  SING  N  N  55  
Y91  C07  H22  SING  N  N  56  
Y91  C07  H23  SING  N  N  57  
Y91  C05  H24  SING  N  N  58  
Y91  C05  H25  SING  N  N  59  
Y91  C22  H26  SING  N  N  60  
Y91  C25  H27  SING  N  N  61  
Y91  C25  H28  SING  N  N  62  
Y91  C27  H29  SING  N  N  63  
Y91  C27  H30  SING  N  N  64  
Y91  C28  H31  SING  N  N  65  
Y91  C28  H32  SING  N  N  66  
Y91  C29  H33  SING  N  N  67  
Y91  C29  H34  SING  N  N  68  
Y91  C30  H35  SING  N  N  69  
Y91  C30  H36  SING  N  N  70  
Y91  N11  H37  SING  N  N  71  
Y91  N18  H38  SING  N  N  72  
Y91  O10  H39  SING  N  N  73  
Y91  S1   O1   DOUB  N  N  74  
Y91  S1   O2   DOUB  N  N  75  
Y91  S1   O3   SING  N  N  76  
Y91  C04  H18  SING  N  N  77  
Y91  N03  H40  SING  N  N  78  
Y91  O3   H41  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y91  InChI             InChI                 1.03   "InChI=1S/C24H41N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h14-20,23,30H,3-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17+,18-,19-,20-,23-/m0/s1"  
Y91  InChIKey          InChI                 1.03   PGYROSRJIVXTOE-UIEASHSYSA-N  
Y91  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]2CCC[C@@H](C2)C1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"  
Y91  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CCC[CH](C2)C1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Y91  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2C[C@@H]3CCC[C@@H](C3)C2"  
Y91  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCCC(C3)C2"  
#
_pdbx_chem_comp_identifier.comp_id          Y91
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-2-[[(1~{R},5~{S})-3-bicyclo[3.3.1]nonanyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y91  "Create component"  2021-02-10  RCSB  
Y91  "Initial release"   2021-02-17  RCSB  
##
