data_YB4
#

_chem_comp.id                                   YB4
_chem_comp.name                                 "~{N}-(2,6-diethylphenyl)-2-[[4-(4-methylpiperazin-1-yl)-2-(propanoylamino)phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C35 H42 N8 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-15
_chem_comp.pdbx_modified_date                   2022-02-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       606.760
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YB4
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LQD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YB4  C4   C1   C  0  1  Y  N  N  67.408  64.991  47.431    5.257   1.378   0.586  C4   YB4   1  
YB4  C14  C2   C  0  1  Y  N  N  69.486  70.864  45.217    0.567   1.988  -0.277  C14  YB4   2  
YB4  C5   C3   C  0  1  Y  N  N  67.560  66.245  46.916    3.967   0.886   0.653  C5   YB4   3  
YB4  C6   C4   C  0  1  Y  N  N  67.477  67.374  47.751    3.725  -0.461   0.430  C6   YB4   4  
YB4  C11  C5   C  0  1  N  N  N  71.036  70.373  43.196   -1.885   2.498  -0.273  C11  YB4   5  
YB4  C7   C6   C  0  1  N  N  N  72.223  66.758  40.549   -5.820   0.247  -0.055  C7   YB4   6  
YB4  C8   C7   C  0  1  Y  N  N  71.468  66.830  41.807   -4.444  -0.175   0.258  C8   YB4   7  
YB4  C9   C8   C  0  1  Y  N  N  71.040  65.736  42.631   -4.035  -1.393   0.973  C9   YB4   8  
YB4  C10  C9   C  0  1  Y  N  N  70.379  66.245  43.702   -2.691  -1.368   1.037  C10  YB4   9  
YB4  C12  C10  C  0  1  N  N  N  71.195  69.415  42.025   -3.124   1.777  -0.807  C12  YB4  10  
YB4  C13  C11  C  0  1  Y  N  N  71.038  67.993  42.444   -3.299   0.481  -0.056  C13  YB4  11  
YB4  N1   N1   N  0  1  Y  N  N  70.367  67.635  43.608   -2.241  -0.238   0.427  N1   YB4  12  
YB4  N2   N2   N  0  1  N  N  N  67.633  68.656  47.228    2.415  -0.959   0.498  N2   YB4  13  
YB4  C3   C12  C  0  1  Y  N  N  67.141  64.788  48.813    6.314   0.524   0.296  C3   YB4  14  
YB4  N3   N3   N  0  1  Y  N  N  69.002  68.187  45.445    0.108  -0.571   0.468  N3   YB4  15  
YB4  C1   C13  C  0  1  Y  N  N  67.220  67.195  49.119    4.784  -1.320   0.139  C1   YB4  16  
YB4  C2   C14  C  0  1  Y  N  N  67.063  65.916  49.644    6.077  -0.826   0.078  C2   YB4  17  
YB4  C15  C15  C  0  1  Y  N  N  70.099  69.931  44.289   -0.733   1.552  -0.089  C15  YB4  18  
YB4  C16  C16  C  0  1  Y  N  N  69.816  68.593  44.463   -0.933   0.222   0.278  C16  YB4  19  
YB4  C17  C17  C  0  1  Y  N  N  68.469  69.108  46.264    1.340  -0.111   0.293  C17  YB4  20  
YB4  N4   N4   N  0  1  Y  N  N  68.675  70.435  46.177    1.566   1.140  -0.084  N4   YB4  21  
YB4  N5   N5   N  0  1  N  N  N  67.117  68.326  49.964    4.541  -2.682  -0.086  N5   YB4  22  
YB4  N6   N6   N  0  1  N  N  N  67.028  63.489  49.328    7.618   1.026   0.224  N6   YB4  23  
YB4  C18  C18  C  0  1  N  N  N  67.308  62.300  48.505    8.229   0.721  -1.077  C18  YB4  24  
YB4  C19  C19  C  0  1  N  N  N  66.459  61.107  48.876    9.677   1.215  -1.087  C19  YB4  25  
YB4  N7   N7   N  0  1  N  N  N  66.556  60.838  50.308    9.700   2.661  -0.824  N7   YB4  26  
YB4  C20  C20  C  0  1  N  N  N  65.976  61.982  51.008    9.089   2.967   0.477  C20  YB4  27  
YB4  C21  C21  C  0  1  N  N  N  66.789  63.231  50.759    7.641   2.472   0.487  C21  YB4  28  
YB4  C22  C22  C  0  1  N  N  N  65.874  59.592  50.662   11.069   3.188  -0.900  C22  YB4  29  
YB4  N8   N8   N  0  1  N  N  N  72.298  65.549  39.952   -6.863  -0.518   0.326  N8   YB4  30  
YB4  O1   O1   O  0  1  N  N  N  72.764  67.757  40.093   -6.016   1.285  -0.657  O1   YB4  31  
YB4  C23  C23  C  0  1  Y  N  N  73.147  65.238  38.854   -8.161  -0.177  -0.067  C23  YB4  32  
YB4  C24  C24  C  0  1  Y  N  N  74.460  64.840  39.105   -8.711   1.036   0.325  C24  YB4  33  
YB4  C25  C25  C  0  1  Y  N  N  75.270  64.549  38.007   -9.993   1.370  -0.065  C25  YB4  34  
YB4  C26  C26  C  0  1  Y  N  N  74.807  64.678  36.717  -10.729   0.498  -0.846  C26  YB4  35  
YB4  C27  C27  C  0  1  Y  N  N  73.512  65.091  36.495  -10.184  -0.711  -1.238  C27  YB4  36  
YB4  C28  C28  C  0  1  Y  N  N  72.657  65.391  37.557   -8.900  -1.049  -0.856  C28  YB4  37  
YB4  C29  C29  C  0  1  N  N  N  74.995  64.679  40.509   -7.910   1.987   1.177  C29  YB4  38  
YB4  C30  C30  C  0  1  N  N  N  71.242  65.845  37.291   -8.308  -2.366  -1.284  C30  YB4  39  
YB4  C31  C31  C  0  1  N  N  N  70.206  64.818  37.637   -8.506  -3.400  -0.173  C31  YB4  40  
YB4  C32  C32  C  0  1  N  N  N  76.191  65.534  40.818   -8.566   3.369   1.153  C32  YB4  41  
YB4  C33  C33  C  0  1  N  N  N  67.868  68.568  51.058    5.530  -3.580   0.091  C33  YB4  42  
YB4  C34  C34  C  0  1  N  N  N  67.442  69.781  51.855    5.307  -5.027  -0.269  C34  YB4  43  
YB4  O2   O2   O  0  1  N  N  N  68.811  67.865  51.382    6.599  -3.225   0.540  O2   YB4  44  
YB4  C35  C35  C  0  1  N  N  N  67.748  71.085  51.175    6.577  -5.827   0.027  C35  YB4  45  
YB4  H1   H1   H  0  1  N  N  N  67.492  64.136  46.777    5.443   2.428   0.756  H1   YB4  46  
YB4  H2   H2   H  0  1  N  N  N  69.692  71.920  45.125    0.764   3.005  -0.582  H2   YB4  47  
YB4  H3   H3   H  0  1  N  N  N  67.745  66.372  45.860    3.147   1.552   0.879  H3   YB4  48  
YB4  H4   H4   H  0  1  N  N  N  72.029  70.524  43.645   -1.595   3.279  -0.976  H4   YB4  49  
YB4  H5   H5   H  0  1  N  N  N  70.664  71.329  42.800   -2.126   2.956   0.687  H5   YB4  50  
YB4  H6   H6   H  0  1  N  N  N  71.214  64.689  42.433   -4.686  -2.157   1.370  H6   YB4  51  
YB4  H7   H7   H  0  1  N  N  N  69.934  65.666  44.498   -2.070  -2.122   1.497  H7   YB4  52  
YB4  H8   H8   H  0  1  N  N  N  72.196  69.549  41.590   -4.003   2.405  -0.661  H8   YB4  53  
YB4  H9   H9   H  0  1  N  N  N  70.432  69.649  41.268   -2.995   1.569  -1.869  H9   YB4  54  
YB4  H10  H10  H  0  1  N  N  N  67.034  69.350  47.627    2.262  -1.898   0.689  H10  YB4  55  
YB4  H11  H11  H  0  1  N  N  N  66.879  65.790  50.701    6.899  -1.489  -0.148  H11  YB4  56  
YB4  H12  H12  H  0  1  N  N  N  66.424  69.008  49.728    3.662  -2.978  -0.368  H12  YB4  57  
YB4  H13  H13  H  0  1  N  N  N  68.367  62.029  48.631    8.211  -0.356  -1.243  H13  YB4  58  
YB4  H14  H14  H  0  1  N  N  N  67.117  62.551  47.451    7.669   1.220  -1.868  H14  YB4  59  
YB4  H15  H15  H  0  1  N  N  N  65.410  61.314  48.616   10.244   0.696  -0.314  H15  YB4  60  
YB4  H16  H16  H  0  1  N  N  N  66.808  60.226  48.317   10.123   1.016  -2.061  H16  YB4  61  
YB4  H18  H18  H  0  1  N  N  N  64.949  62.142  50.648    9.649   2.467   1.268  H18  YB4  62  
YB4  H19  H19  H  0  1  N  N  N  65.958  61.773  52.088    9.107   4.044   0.643  H19  YB4  63  
YB4  H20  H20  H  0  1  N  N  N  67.761  63.122  51.262    7.074   2.991  -0.286  H20  YB4  64  
YB4  H21  H21  H  0  1  N  N  N  66.250  64.090  51.184    7.195   2.672   1.461  H21  YB4  65  
YB4  H22  H22  H  0  1  N  N  N  65.965  59.418  51.744   11.473   3.007  -1.896  H22  YB4  66  
YB4  H23  H23  H  0  1  N  N  N  64.811  59.666  50.391   11.057   4.260  -0.702  H23  YB4  67  
YB4  H24  H24  H  0  1  N  N  N  66.334  58.755  50.116   11.693   2.688  -0.159  H24  YB4  68  
YB4  H25  H25  H  0  1  N  N  N  71.714  64.819  40.308   -6.712  -1.305   0.873  H25  YB4  69  
YB4  H26  H26  H  0  1  N  N  N  76.284  64.215  38.173  -10.421   2.314   0.239  H26  YB4  70  
YB4  H27  H27  H  0  1  N  N  N  75.456  64.456  35.883  -11.731   0.761  -1.149  H27  YB4  71  
YB4  H28  H28  H  0  1  N  N  N  73.152  65.184  35.481  -10.761  -1.390  -1.848  H28  YB4  72  
YB4  H29  H29  H  0  1  N  N  N  74.193  64.941  41.215   -7.877   1.618   2.202  H29  YB4  73  
YB4  H30  H30  H  0  1  N  N  N  75.279  63.626  40.651   -6.895   2.060   0.784  H30  YB4  74  
YB4  H31  H31  H  0  1  N  N  N  71.049  66.748  37.888   -8.803  -2.710  -2.192  H31  YB4  75  
YB4  H32  H32  H  0  1  N  N  N  71.149  66.086  36.222   -7.242  -2.240  -1.477  H32  YB4  76  
YB4  H33  H33  H  0  1  N  N  N  69.205  65.218  37.418   -8.088  -3.017   0.758  H33  YB4  77  
YB4  H34  H34  H  0  1  N  N  N  70.377  63.910  37.041   -9.571  -3.592  -0.041  H34  YB4  78  
YB4  H35  H35  H  0  1  N  N  N  70.276  64.573  38.707   -8.001  -4.327  -0.445  H35  YB4  79  
YB4  H36  H36  H  0  1  N  N  N  76.513  65.355  41.855   -8.670   3.705   0.121  H36  YB4  80  
YB4  H37  H37  H  0  1  N  N  N  77.011  65.279  40.130   -9.550   3.312   1.617  H37  YB4  81  
YB4  H38  H38  H  0  1  N  N  N  75.925  66.594  40.695   -7.945   4.076   1.704  H38  YB4  82  
YB4  H39  H39  H  0  1  N  N  N  66.357  69.723  52.023    4.481  -5.424   0.321  H39  YB4  83  
YB4  H40  H40  H  0  1  N  N  N  67.965  69.762  52.823    5.067  -5.104  -1.329  H40  YB4  84  
YB4  H41  H41  H  0  1  N  N  N  67.412  71.918  51.810    6.416  -6.873  -0.233  H41  YB4  85  
YB4  H42  H42  H  0  1  N  N  N  68.832  71.166  51.008    7.403  -5.429  -0.562  H42  YB4  86  
YB4  H43  H43  H  0  1  N  N  N  67.224  71.126  50.209    6.817  -5.749   1.088  H43  YB4  87  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YB4  C27  C26  DOUB  Y  N   1  
YB4  C27  C28  SING  Y  N   2  
YB4  C26  C25  SING  Y  N   3  
YB4  C30  C28  SING  N  N   4  
YB4  C30  C31  SING  N  N   5  
YB4  C28  C23  DOUB  Y  N   6  
YB4  C25  C24  DOUB  Y  N   7  
YB4  C23  C24  SING  Y  N   8  
YB4  C23  N8   SING  N  N   9  
YB4  C24  C29  SING  N  N  10  
YB4  N8   C7   SING  N  N  11  
YB4  O1   C7   DOUB  N  N  12  
YB4  C29  C32  SING  N  N  13  
YB4  C7   C8   SING  N  N  14  
YB4  C8   C13  DOUB  Y  N  15  
YB4  C8   C9   SING  Y  N  16  
YB4  C12  C13  SING  N  N  17  
YB4  C12  C11  SING  N  N  18  
YB4  C13  N1   SING  Y  N  19  
YB4  C9   C10  DOUB  Y  N  20  
YB4  C11  C15  SING  N  N  21  
YB4  N1   C10  SING  Y  N  22  
YB4  N1   C16  SING  N  N  23  
YB4  C15  C16  DOUB  Y  N  24  
YB4  C15  C14  SING  Y  N  25  
YB4  C16  N3   SING  Y  N  26  
YB4  C14  N4   DOUB  Y  N  27  
YB4  N3   C17  DOUB  Y  N  28  
YB4  N4   C17  SING  Y  N  29  
YB4  C17  N2   SING  N  N  30  
YB4  C5   C4   DOUB  Y  N  31  
YB4  C5   C6   SING  Y  N  32  
YB4  N2   C6   SING  N  N  33  
YB4  C4   C3   SING  Y  N  34  
YB4  C6   C1   DOUB  Y  N  35  
YB4  C18  C19  SING  N  N  36  
YB4  C18  N6   SING  N  N  37  
YB4  C3   N6   SING  N  N  38  
YB4  C3   C2   DOUB  Y  N  39  
YB4  C19  N7   SING  N  N  40  
YB4  C1   C2   SING  Y  N  41  
YB4  C1   N5   SING  N  N  42  
YB4  N6   C21  SING  N  N  43  
YB4  N5   C33  SING  N  N  44  
YB4  N7   C22  SING  N  N  45  
YB4  N7   C20  SING  N  N  46  
YB4  C21  C20  SING  N  N  47  
YB4  C33  O2   DOUB  N  N  48  
YB4  C33  C34  SING  N  N  49  
YB4  C35  C34  SING  N  N  50  
YB4  C4   H1   SING  N  N  51  
YB4  C14  H2   SING  N  N  52  
YB4  C5   H3   SING  N  N  53  
YB4  C11  H4   SING  N  N  54  
YB4  C11  H5   SING  N  N  55  
YB4  C9   H6   SING  N  N  56  
YB4  C10  H7   SING  N  N  57  
YB4  C12  H8   SING  N  N  58  
YB4  C12  H9   SING  N  N  59  
YB4  N2   H10  SING  N  N  60  
YB4  C2   H11  SING  N  N  61  
YB4  N5   H12  SING  N  N  62  
YB4  C18  H13  SING  N  N  63  
YB4  C18  H14  SING  N  N  64  
YB4  C19  H15  SING  N  N  65  
YB4  C19  H16  SING  N  N  66  
YB4  C20  H18  SING  N  N  67  
YB4  C20  H19  SING  N  N  68  
YB4  C21  H20  SING  N  N  69  
YB4  C21  H21  SING  N  N  70  
YB4  C22  H22  SING  N  N  71  
YB4  C22  H23  SING  N  N  72  
YB4  C22  H24  SING  N  N  73  
YB4  N8   H25  SING  N  N  74  
YB4  C25  H26  SING  N  N  75  
YB4  C26  H27  SING  N  N  76  
YB4  C27  H28  SING  N  N  77  
YB4  C29  H29  SING  N  N  78  
YB4  C29  H30  SING  N  N  79  
YB4  C30  H31  SING  N  N  80  
YB4  C30  H32  SING  N  N  81  
YB4  C31  H33  SING  N  N  82  
YB4  C31  H34  SING  N  N  83  
YB4  C31  H35  SING  N  N  84  
YB4  C32  H36  SING  N  N  85  
YB4  C32  H37  SING  N  N  86  
YB4  C32  H38  SING  N  N  87  
YB4  C34  H39  SING  N  N  88  
YB4  C34  H40  SING  N  N  89  
YB4  C35  H41  SING  N  N  90  
YB4  C35  H42  SING  N  N  91  
YB4  C35  H43  SING  N  N  92  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YB4  InChI             InChI                 1.03   "InChI=1S/C35H42N8O2/c1-5-23-9-8-10-24(6-2)32(23)39-34(45)27-15-16-43-30(27)14-11-25-22-36-35(40-33(25)43)38-28-13-12-26(21-29(28)37-31(44)7-3)42-19-17-41(4)18-20-42/h8-10,12-13,15-16,21-22H,5-7,11,14,17-20H2,1-4H3,(H,37,44)(H,39,45)(H,36,38,40)"  
YB4  InChIKey          InChI                 1.03   OFKCTLDDZSLLFR-UHFFFAOYSA-N  
YB4  SMILES_CANONICAL  CACTVS                3.385  "CCC(=O)Nc1cc(ccc1Nc2ncc3CCc4n(ccc4C(=O)Nc5c(CC)cccc5CC)c3n2)N6CCN(C)CC6"  
YB4  SMILES            CACTVS                3.385  "CCC(=O)Nc1cc(ccc1Nc2ncc3CCc4n(ccc4C(=O)Nc5c(CC)cccc5CC)c3n2)N6CCN(C)CC6"  
YB4  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCc1cccc(c1NC(=O)c2ccn-3c2CCc4c3nc(nc4)Nc5ccc(cc5NC(=O)CC)N6CCN(CC6)C)CC"  
YB4  SMILES            "OpenEye OEToolkits"  2.0.7  "CCc1cccc(c1NC(=O)c2ccn-3c2CCc4c3nc(nc4)Nc5ccc(cc5NC(=O)CC)N6CCN(CC6)C)CC"  
#
_pdbx_chem_comp_identifier.comp_id          YB4
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-(2,6-diethylphenyl)-2-[[4-(4-methylpiperazin-1-yl)-2-(propanoylamino)phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YB4  "Create component"  2021-02-15  RCSB  
YB4  "Initial release"   2022-02-16  RCSB  
##
