data_YBJ
# 
_chem_comp.id                                    YBJ 
_chem_comp.name                                  "(2~{S},4~{S},5~{R},6~{S})-4-azanyl-5-methoxy-6-methyl-oxan-2-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H15 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         L-actinosamine 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-02-16 
_chem_comp.pdbx_modified_date                    2022-12-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        161.199 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YBJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7LKC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YBJ C1  C1  C 0 1 N N R 12.793 16.387 3.207 2.096  0.266  0.319  C1  YBJ 1  
YBJ C2  C2  C 0 1 N N N 11.811 15.328 3.694 1.127  1.406  0.643  C2  YBJ 2  
YBJ C3  C3  C 0 1 N N S 10.537 15.983 4.192 -0.162 1.215  -0.163 C3  YBJ 3  
YBJ C4  C4  C 0 1 N N R 9.969  16.936 3.152 -0.753 -0.161 0.160  C4  YBJ 4  
YBJ C5  C5  C 0 1 N N S 11.033 17.942 2.736 0.288  -1.240 -0.146 C5  YBJ 5  
YBJ N   N1  N 0 1 N N N 9.521  14.948 4.482 -1.127 2.262  0.198  N   YBJ 6  
YBJ C   C6  C 0 1 N N N 10.551 18.857 1.623 -0.274 -2.613 0.230  C   YBJ 7  
YBJ O   O1  O 0 1 N N N 12.182 17.248 2.245 1.472  -0.986 0.613  O   YBJ 8  
YBJ C6  C7  C 0 1 N N N 7.687  17.535 2.893 -3.147 -0.111 0.035  C6  YBJ 9  
YBJ O2  O2  O 0 1 N N N 8.848  17.601 3.724 -1.917 -0.380 -0.641 O2  YBJ 10 
YBJ H9  H1  H 0 1 N N N 13.632 15.862 2.726 2.998  0.373  0.922  H9  YBJ 11 
YBJ H8  H3  H 0 1 N N N 11.569 14.648 2.864 0.895  1.395  1.708  H8  YBJ 12 
YBJ H7  H4  H 0 1 N N N 12.270 14.757 4.514 1.584  2.359  0.379  H7  YBJ 13 
YBJ H2  H5  H 0 1 N N N 10.759 16.547 5.110 0.062  1.277  -1.228 H2  YBJ 14 
YBJ H1  H6  H 0 1 N N N 9.660  16.358 2.269 -1.024 -0.203 1.215  H1  YBJ 15 
YBJ H   H7  H 0 1 N N N 11.304 18.554 3.609 0.527  -1.224 -1.209 H   YBJ 16 
YBJ H10 H8  H 0 1 N N N 9.879  14.311 5.165 -0.721 3.180  0.092  H10 YBJ 17 
YBJ H11 H9  H 0 1 N N N 8.692  15.384 4.834 -1.974 2.175  -0.344 H11 YBJ 18 
YBJ H4  H11 H 0 1 N N N 9.664  19.412 1.962 -1.124 -2.845 -0.411 H4  YBJ 19 
YBJ H6  H12 H 0 1 N N N 11.349 19.567 1.361 0.499  -3.370 0.097  H6  YBJ 20 
YBJ H5  H13 H 0 1 N N N 10.291 18.255 0.740 -0.596 -2.601 1.271  H5  YBJ 21 
YBJ H13 H14 H 0 1 N N N 6.855  18.063 3.382 -3.276 -0.821 0.852  H13 YBJ 22 
YBJ H12 H15 H 0 1 N N N 7.902  18.009 1.924 -3.127 0.903  0.436  H12 YBJ 23 
YBJ H14 H16 H 0 1 N N N 7.410  16.483 2.733 -3.976 -0.208 -0.666 H14 YBJ 24 
YBJ O1  O3  O 0 1 N Y N 13.255 17.067 4.314 2.441  0.313  -1.067 O1  YBJ 25 
YBJ H3  H17 H 0 1 N Y N 13.651 16.453 4.921 3.053  -0.382 -1.344 H3  YBJ 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YBJ C  C5  SING N N 1  
YBJ O  C5  SING N N 2  
YBJ O  C1  SING N N 3  
YBJ C5 C4  SING N N 4  
YBJ C6 O2  SING N N 5  
YBJ C4 O2  SING N N 6  
YBJ C4 C3  SING N N 7  
YBJ C1 C2  SING N N 8  
YBJ C2 C3  SING N N 9  
YBJ C3 N   SING N N 10 
YBJ C1 H9  SING N N 11 
YBJ C2 H8  SING N N 12 
YBJ C2 H7  SING N N 13 
YBJ C3 H2  SING N N 14 
YBJ C4 H1  SING N N 15 
YBJ C5 H   SING N N 16 
YBJ N  H10 SING N N 17 
YBJ N  H11 SING N N 18 
YBJ C  H4  SING N N 19 
YBJ C  H6  SING N N 20 
YBJ C  H5  SING N N 21 
YBJ C6 H13 SING N N 22 
YBJ C6 H12 SING N N 23 
YBJ C6 H14 SING N N 24 
YBJ C1 O1  SING N N 25 
YBJ O1 H3  SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YBJ InChI            InChI                1.03  "InChI=1S/C7H15NO3/c1-4-7(10-2)5(8)3-6(9)11-4/h4-7,9H,3,8H2,1-2H3/t4-,5-,6?,7-/m0/s1" 
YBJ InChIKey         InChI                1.03  ZECQVPSAXSIXIC-KQXJUZEQSA-N                                                           
YBJ SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@@H](N)C[C@H](O)O[C@H]1C"                                                 
YBJ SMILES           CACTVS               3.385 "CO[CH]1[CH](N)C[CH](O)O[CH]1C"                                                       
YBJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@@H]([C@H](C[C@H](O1)O)N)OC"                                                
YBJ SMILES           "OpenEye OEToolkits" 2.0.7 "CC1C(C(CC(O1)O)N)OC"                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           YBJ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},4~{S},5~{R},6~{S})-4-azanyl-5-methoxy-6-methyl-oxan-2-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YBJ "Create component" 2021-02-16 RCSB 
YBJ "Modify synonyms"  2022-11-28 RCSB 
YBJ "Initial release"  2022-12-07 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      YBJ 
_pdbx_chem_comp_synonyms.name         L-actinosamine 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
