data_YHD
#

_chem_comp.id                                   YHD
_chem_comp.name                                 "N-[(1R)-2-([1,1'-biphenyl]-4-yl)-1-boronoethyl]-1-methyl-L-prolinamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H25 B N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-08
_chem_comp.pdbx_modified_date                   2021-09-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       352.235
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YHD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LXV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YHD  C11  C1   C  0  1  Y  N  N  208.345  220.875  176.228   1.560   1.222   0.753  C11  YHD   1  
YHD  C13  C2   C  0  1  Y  N  N  208.998  223.156  177.119   3.705   0.220   0.356  C13  YHD   2  
YHD  C14  C3   C  0  1  Y  N  N  210.089  224.270  177.464   5.128   0.346  -0.046  C14  YHD   3  
YHD  C16  C4   C  0  1  Y  N  N  210.960  226.119  178.940   6.971   1.701  -0.774  C16  YHD   4  
YHD  C17  C5   C  0  1  Y  N  N  212.073  226.375  178.147   7.782   0.581  -0.797  C17  YHD   5  
YHD  C18  C6   C  0  1  Y  N  N  212.201  225.587  177.011   7.271  -0.657  -0.451  C18  YHD   6  
YHD  C19  C7   C  0  1  Y  N  N  211.246  224.596  176.702   5.948  -0.780  -0.076  C19  YHD   7  
YHD  C21  C8   C  0  1  Y  N  N  206.638  222.212  176.977   1.862  -1.135   1.084  C21  YHD   8  
YHD  C10  C9   C  0  1  Y  N  N  206.956  220.955  176.415   1.050  -0.015   1.104  C10  YHD   9  
YHD  C12  C10  C  0  1  Y  N  N  209.282  221.887  176.547   2.883   1.345   0.379  C12  YHD  10  
YHD  C15  C11  C  0  1  Y  N  N  210.020  225.119  178.605   5.647   1.589  -0.401  C15  YHD  11  
YHD  C20  C12  C  0  1  Y  N  N  207.586  223.226  177.303   3.186  -1.023   0.711  C20  YHD  12  
YHD  B01  B1   B  0  1  N  N  N  203.437  219.408  175.490  -0.776  -1.763  -0.395  B01  YHD  13  
YHD  C02  C13  C  0  1  N  N  R  204.509  219.760  176.621  -1.251  -0.425   0.275  C02  YHD  14  
YHD  C03  C14  C  0  1  N  N  N  203.437  219.079  178.782  -3.615   0.067  -0.047  C03  YHD  15  
YHD  C04  C15  C  0  1  N  N  S  203.272  218.147  180.014  -5.061  -0.061   0.360  C04  YHD  16  
YHD  C05  C16  C  0  1  N  N  N  204.810  219.761  181.061  -4.677   2.331   0.230  C05  YHD  17  
YHD  C06  C17  C  0  1  N  N  N  203.742  217.995  182.396  -6.778   1.365  -0.516  C06  YHD  18  
YHD  C07  C18  C  0  1  N  N  N  202.274  218.374  182.296  -7.207  -0.103  -0.761  C07  YHD  19  
YHD  C08  C19  C  0  1  N  N  N  201.950  218.354  180.796  -5.843  -0.840  -0.718  C08  YHD  20  
YHD  C09  C20  C  0  1  N  N  N  205.964  219.817  176.033  -0.396  -0.143   1.512  C09  YHD  21  
YHD  N22  N1   N  0  1  N  N  N  204.337  218.879  177.785  -2.656  -0.550   0.671  N22  YHD  22  
YHD  N23  N2   N  0  1  N  N  N  204.346  218.346  181.066  -5.673   1.276   0.463  N23  YHD  23  
YHD  O24  O1   O  0  1  N  N  N  203.185  218.080  175.394  -1.356  -2.999  -0.004  O24  YHD  24  
YHD  O25  O2   O  0  1  N  N  N  202.672  220.097  178.710  -3.316   0.725  -1.021  O25  YHD  25  
YHD  O26  O3   O  0  1  N  N  N  202.221  219.965  175.723   0.235  -1.738  -1.393  O26  YHD  26  
YHD  H1   H1   H  0  1  N  N  N  208.733  219.961  175.803   0.921   2.092   0.767  H1   YHD  27  
YHD  H2   H2   H  0  1  N  N  N  210.810  226.701  179.837   7.374   2.664  -1.049  H2   YHD  28  
YHD  H3   H3   H  0  1  N  N  N  212.793  227.139  178.399   8.817   0.672  -1.090  H3   YHD  29  
YHD  H4   H4   H  0  1  N  N  N  213.045  225.735  176.354   7.908  -1.528  -0.470  H4   YHD  30  
YHD  H5   H5   H  0  1  N  N  N  211.409  224.028  175.798   5.550  -1.747   0.195  H5   YHD  31  
YHD  H6   H6   H  0  1  N  N  N  205.597  222.421  177.175   1.458  -2.098   1.359  H6   YHD  32  
YHD  H7   H7   H  0  1  N  N  N  210.319  221.672  176.334   3.280   2.311   0.105  H7   YHD  33  
YHD  H8   H8   H  0  1  N  N  N  209.179  224.988  179.270   5.014   2.465  -0.384  H8   YHD  34  
YHD  H9   H9   H  0  1  N  N  N  207.196  224.137  177.732   3.819  -1.898   0.694  H9   YHD  35  
YHD  H10  H10  H  0  1  N  N  N  204.273  220.783  176.949  -1.145   0.395  -0.435  H10  YHD  36  
YHD  H11  H11  H  0  1  N  N  N  203.308  217.104  179.665  -5.132  -0.579   1.317  H11  YHD  37  
YHD  H12  H12  H  0  1  N  N  N  205.588  219.895  181.827  -4.380   2.324  -0.819  H12  YHD  38  
YHD  H13  H13  H  0  1  N  N  N  205.223  220.008  180.072  -5.109   3.300   0.479  H13  YHD  39  
YHD  H14  H14  H  0  1  N  N  N  203.962  220.426  181.280  -3.803   2.150   0.856  H14  YHD  40  
YHD  H15  H15  H  0  1  N  N  N  203.847  216.918  182.592  -6.427   1.818  -1.443  H15  YHD  41  
YHD  H16  H16  H  0  1  N  N  N  204.231  218.564  183.201  -7.607   1.939  -0.103  H16  YHD  42  
YHD  H17  H17  H  0  1  N  N  N  202.106  219.378  182.713  -7.866  -0.455   0.033  H17  YHD  43  
YHD  H18  H18  H  0  1  N  N  N  201.651  217.645  182.834  -7.681  -0.213  -1.737  H18  YHD  44  
YHD  H19  H19  H  0  1  N  N  N  201.490  219.309  180.502  -5.339  -0.775  -1.682  H19  YHD  45  
YHD  H20  H20  H  0  1  N  N  N  201.255  217.530  180.577  -5.976  -1.880  -0.421  H20  YHD  46  
YHD  H21  H21  H  0  1  N  N  N  205.855  219.856  174.939  -0.502  -0.963   2.222  H21  YHD  47  
YHD  H22  H22  H  0  1  N  N  N  206.451  218.873  176.319  -0.725   0.786   1.977  H22  YHD  48  
YHD  H23  H23  H  0  1  N  N  N  204.926  218.073  177.847  -2.895  -1.076   1.450  H23  YHD  49  
YHD  H25  H25  H  0  1  N  N  N  203.996  217.614  175.229  -2.034  -2.915   0.680  H25  YHD  50  
YHD  H26  H26  H  0  1  N  N  N  202.314  220.907  175.804   0.569  -0.852  -1.592  H26  YHD  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YHD  O24  B01  SING  N  N   1  
YHD  B01  O26  SING  N  N   2  
YHD  B01  C02  SING  N  N   3  
YHD  C09  C10  SING  N  N   4  
YHD  C09  C02  SING  N  N   5  
YHD  C11  C10  DOUB  Y  N   6  
YHD  C11  C12  SING  Y  N   7  
YHD  C10  C21  SING  Y  N   8  
YHD  C12  C13  DOUB  Y  N   9  
YHD  C02  N22  SING  N  N  10  
YHD  C19  C18  DOUB  Y  N  11  
YHD  C19  C14  SING  Y  N  12  
YHD  C21  C20  DOUB  Y  N  13  
YHD  C18  C17  SING  Y  N  14  
YHD  C13  C20  SING  Y  N  15  
YHD  C13  C14  SING  N  N  16  
YHD  C14  C15  DOUB  Y  N  17  
YHD  N22  C03  SING  N  N  18  
YHD  C17  C16  DOUB  Y  N  19  
YHD  C15  C16  SING  Y  N  20  
YHD  O25  C03  DOUB  N  N  21  
YHD  C03  C04  SING  N  N  22  
YHD  C04  C08  SING  N  N  23  
YHD  C04  N23  SING  N  N  24  
YHD  C08  C07  SING  N  N  25  
YHD  C05  N23  SING  N  N  26  
YHD  N23  C06  SING  N  N  27  
YHD  C07  C06  SING  N  N  28  
YHD  C11  H1   SING  N  N  29  
YHD  C16  H2   SING  N  N  30  
YHD  C17  H3   SING  N  N  31  
YHD  C18  H4   SING  N  N  32  
YHD  C19  H5   SING  N  N  33  
YHD  C21  H6   SING  N  N  34  
YHD  C12  H7   SING  N  N  35  
YHD  C15  H8   SING  N  N  36  
YHD  C20  H9   SING  N  N  37  
YHD  C02  H10  SING  N  N  38  
YHD  C04  H11  SING  N  N  39  
YHD  C05  H12  SING  N  N  40  
YHD  C05  H13  SING  N  N  41  
YHD  C05  H14  SING  N  N  42  
YHD  C06  H15  SING  N  N  43  
YHD  C06  H16  SING  N  N  44  
YHD  C07  H17  SING  N  N  45  
YHD  C07  H18  SING  N  N  46  
YHD  C08  H19  SING  N  N  47  
YHD  C08  H20  SING  N  N  48  
YHD  C09  H21  SING  N  N  49  
YHD  C09  H22  SING  N  N  50  
YHD  N22  H23  SING  N  N  51  
YHD  O24  H25  SING  N  N  52  
YHD  O26  H26  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YHD  SMILES            ACDLabs               12.01  "O=C(NC(Cc1ccc(cc1)c1ccccc1)B(O)O)C1CCCN1C"  
YHD  InChI             InChI                 1.03   "InChI=1S/C20H25BN2O3/c1-23-13-5-8-18(23)20(24)22-19(21(25)26)14-15-9-11-17(12-10-15)16-6-3-2-4-7-16/h2-4,6-7,9-12,18-19,25-26H,5,8,13-14H2,1H3,(H,22,24)/t18-,19-/m0/s1"  
YHD  InChIKey          InChI                 1.03   VGGVSZZQWVUBBQ-OALUTQOASA-N  
YHD  SMILES_CANONICAL  CACTVS                3.385  "CN1CCC[C@H]1C(=O)N[C@@H](Cc2ccc(cc2)c3ccccc3)B(O)O"  
YHD  SMILES            CACTVS                3.385  "CN1CCC[CH]1C(=O)N[CH](Cc2ccc(cc2)c3ccccc3)B(O)O"  
YHD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "B([C@H](Cc1ccc(cc1)c2ccccc2)NC(=O)[C@@H]3CCCN3C)(O)O"  
YHD  SMILES            "OpenEye OEToolkits"  2.0.7  "B(C(Cc1ccc(cc1)c2ccccc2)NC(=O)C3CCCN3C)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YHD  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(1R)-2-([1,1'-biphenyl]-4-yl)-1-boronoethyl]-1-methyl-L-prolinamide"  
YHD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(1~{R})-1-[[(2~{S})-1-methylpyrrolidin-2-yl]carbonylamino]-2-(4-phenylphenyl)ethyl]boronic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YHD  "Create component"  2021-03-08  RCSB  
YHD  "Initial release"   2021-09-22  RCSB  
##
