data_YKA
#

_chem_comp.id                                   YKA
_chem_comp.name                                 "(1R,2S)-2-((S)-2-((((2-(4,4-difluorocyclohexyl)propan-2-yl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H37 F2 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-11
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       553.617
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YKA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M00
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YKA  C01  C1   C  0  1  N  N  N  -14.088   3.022  40.163  -3.793   2.590   0.954  C01  YKA   1  
YKA  C02  C2   C  0  1  N  N  N  -14.672   3.149  41.563  -4.025   1.080   1.024  C02  YKA   2  
YKA  C04  C3   C  0  1  N  N  N  -13.823   0.965  42.360  -1.692   0.591   0.906  C04  YKA   3  
YKA  C06  C4   C  0  1  N  N  S  -13.246  -1.333  42.957   0.713   0.200   0.927  C06  YKA   4  
YKA  C07  C5   C  0  1  N  N  N  -13.754  -2.473  43.872   0.938  -0.765   2.093  C07  YKA   5  
YKA  C08  C6   C  0  1  N  N  N  -14.027  -2.086  45.328  -0.039  -0.436   3.223  C08  YKA   6  
YKA  C09  C7   C  0  1  N  N  N  -12.838  -1.369  45.964   0.101  -1.476   4.337  C09  YKA   7  
YKA  C10  C8   C  0  1  N  N  N  -14.466  -3.265  46.181   0.275   0.954   3.781  C10  YKA   8  
YKA  C11  C9   C  0  1  N  N  N  -13.157  -1.833  41.522   1.754  -0.043  -0.135  C11  YKA   9  
YKA  C13  C10  C  0  1  N  N  S  -11.896  -2.878  39.591   4.078  -0.230  -0.844  C13  YKA  10  
YKA  C14  C11  C  0  1  N  N  N  -10.931  -1.975  38.771   5.061   0.934  -0.978  C14  YKA  11  
YKA  C15  C12  C  0  1  N  N  R  -11.227  -0.467  38.908   4.345   2.138  -1.593  C15  YKA  12  
YKA  C16  C13  C  0  1  N  N  N  -10.242   0.447  38.197   3.461   2.819  -0.567  C16  YKA  13  
YKA  C18  C14  C  0  1  N  N  N  -12.321   0.984  37.160   4.921   4.412  -1.104  C18  YKA  14  
YKA  C19  C15  C  0  1  N  N  N  -12.557  -0.083  38.268   5.355   3.245  -1.965  C19  YKA  15  
YKA  C21  C16  C  0  1  N  N  R  -11.428  -4.376  39.603   4.833  -1.488  -0.408  C21  YKA  16  
YKA  C25  C17  C  0  1  N  N  N  -16.111   3.717  41.382  -4.122   0.646   2.489  C25  YKA  17  
YKA  C26  C18  C  0  1  N  N  N  -13.868   4.091  42.489  -5.328   0.730   0.302  C26  YKA  18  
YKA  C27  C19  C  0  1  N  N  N  -13.981   5.630  42.356  -5.231   1.163  -1.163  C27  YKA  19  
YKA  C28  C20  C  0  1  N  N  N  -13.040   6.425  43.237  -6.533   0.813  -1.885  C28  YKA  20  
YKA  C29  C21  C  0  1  N  N  N  -13.221   6.051  44.732  -6.766  -0.697  -1.814  C29  YKA  21  
YKA  C32  C22  C  0  1  N  N  N  -13.185   4.513  44.909  -6.863  -1.131  -0.350  C32  YKA  22  
YKA  C33  C23  C  0  1  N  N  N  -14.143   3.821  43.966  -5.560  -0.781   0.372  C33  YKA  23  
YKA  F30  F1   F  0  1  N  N  N  -12.274   6.663  45.479  -7.957  -1.017  -2.475  F30  YKA  24  
YKA  F31  F2   F  0  1  N  N  N  -14.383   6.532  45.226  -5.699  -1.363  -2.428  F31  YKA  25  
YKA  N05  N1   N  0  1  N  N  N  -14.165  -0.225  42.993  -0.621  -0.020   0.362  N05  YKA  26  
YKA  N12  N2   N  0  1  N  N  N  -12.017  -2.412  40.993   3.062   0.101   0.158  N12  YKA  27  
YKA  N17  N3   N  0  1  N  N  N  -10.887   1.241  37.248   3.895   4.075  -0.392  N17  YKA  28  
YKA  O03  O1   O  0  1  N  N  N  -14.837   1.866  42.158  -2.918   0.389   0.387  O03  YKA  29  
YKA  O20  O2   O  0  1  N  N  N   -9.043   0.522  38.426   2.517   2.311   0.002  O20  YKA  30  
YKA  O22  O3   O  0  1  N  N  N  -12.460  -5.063  40.240   5.886  -1.757  -1.336  O22  YKA  31  
YKA  O23  O4   O  0  1  N  N  N  -14.143  -1.688  40.810   1.415  -0.368  -1.253  O23  YKA  32  
YKA  O24  O5   O  0  1  N  N  N  -12.645   1.201  42.029  -1.552   1.324   1.865  O24  YKA  33  
YKA  H1   H1   H  0  1  N  N  N  -13.065   2.623  40.227  -3.724   2.899  -0.089  H1   YKA  34  
YKA  H2   H2   H  0  1  N  N  N  -14.711   2.340  39.566  -4.624   3.109   1.432  H2   YKA  35  
YKA  H3   H3   H  0  1  N  N  N  -14.066   4.012  39.684  -2.865   2.840   1.469  H3   YKA  36  
YKA  H4   H4   H  0  1  N  N  N  -12.248  -1.018  43.296   0.791   1.227   1.285  H4   YKA  37  
YKA  H5   H5   H  0  1  N  N  N  -14.691  -2.858  43.443   0.773  -1.788   1.755  H5   YKA  38  
YKA  H6   H6   H  0  1  N  N  N  -12.996  -3.270  43.871   1.961  -0.663   2.456  H6   YKA  39  
YKA  H7   H7   H  0  1  N  N  N  -14.862  -1.370  45.316  -1.058  -0.451   2.838  H7   YKA  40  
YKA  H8   H8   H  0  1  N  N  N  -13.079  -1.111  47.006   1.120  -1.461   4.722  H8   YKA  41  
YKA  H9   H9   H  0  1  N  N  N  -11.958  -2.029  45.944  -0.595  -1.242   5.142  H9   YKA  42  
YKA  H10  H10  H  0  1  N  N  N  -12.620  -0.450  45.400  -0.123  -2.466   3.939  H10  YKA  43  
YKA  H11  H11  H  0  1  N  N  N  -14.646  -2.926  47.212   0.176   1.695   2.988  H11  YKA  44  
YKA  H12  H12  H  0  1  N  N  N  -15.392  -3.691  45.768  -0.421   1.188   4.587  H12  YKA  45  
YKA  H13  H13  H  0  1  N  N  N  -13.677  -4.032  46.180   1.295   0.969   4.166  H13  YKA  46  
YKA  H14  H14  H  0  1  N  N  N  -12.887  -2.838  39.115   3.595  -0.411  -1.805  H14  YKA  47  
YKA  H15  H15  H  0  1  N  N  N  -11.015  -2.251  37.709   5.443   1.202   0.007  H15  YKA  48  
YKA  H16  H16  H  0  1  N  N  N   -9.904  -2.160  39.117   5.890   0.637  -1.621  H16  YKA  49  
YKA  H17  H17  H  0  1  N  N  N  -11.254  -0.206  39.976   3.763   1.837  -2.464  H17  YKA  50  
YKA  H18  H18  H  0  1  N  N  N  -13.043   1.427  36.489   5.397   5.381  -1.086  H18  YKA  51  
YKA  H19  H19  H  0  1  N  N  N  -13.226   0.331  39.037   6.370   2.938  -1.714  H19  YKA  52  
YKA  H20  H20  H  0  1  N  N  N  -13.019  -0.976  37.822   5.278   3.497  -3.022  H20  YKA  53  
YKA  S1   S1   S  0  1  N  Y  N  -10.505  -4.488  40.133   3.690  -2.896  -0.367  S1   YKA  54  
YKA  H22  H22  H  0  1  N  N  N  -11.391  -4.698  38.552   5.254  -1.333   0.585  H22  YKA  55  
YKA  H23  H23  H  0  1  N  N  N  -16.587   3.832  42.367  -4.953   1.165   2.967  H23  YKA  56  
YKA  H24  H24  H  0  1  N  N  N  -16.059   4.696  40.884  -4.288  -0.430   2.539  H24  YKA  57  
YKA  H25  H25  H  0  1  N  N  N  -16.704   3.024  40.767  -3.194   0.896   3.003  H25  YKA  58  
YKA  H26  H26  H  0  1  N  N  N  -12.808   3.849  42.323  -6.159   1.248   0.780  H26  YKA  59  
YKA  H27  H27  H  0  1  N  N  N  -13.774   5.897  41.309  -5.065   2.239  -1.213  H27  YKA  60  
YKA  H28  H28  H  0  1  N  N  N  -15.011   5.919  42.611  -4.400   0.645  -1.640  H28  YKA  61  
YKA  H29  H29  H  0  1  N  N  N  -12.003   6.213  42.937  -7.365   1.331  -1.407  H29  YKA  62  
YKA  H30  H30  H  0  1  N  N  N  -13.248   7.497  43.108  -6.464   1.122  -2.928  H30  YKA  63  
YKA  H31  H31  H  0  1  N  N  N  -13.463   4.266  45.944  -7.694  -0.613   0.128  H31  YKA  64  
YKA  H32  H32  H  0  1  N  N  N  -12.165   4.154  44.708  -7.028  -2.207  -0.300  H32  YKA  65  
YKA  H33  H33  H  0  1  N  N  N  -15.162   4.164  44.196  -4.729  -1.299  -0.106  H33  YKA  66  
YKA  H34  H34  H  0  1  N  N  N  -14.074   2.737  44.138  -5.629  -1.089   1.415  H34  YKA  67  
YKA  H35  H35  H  0  1  N  N  N  -15.041  -0.310  43.469  -0.733  -0.605  -0.403  H35  YKA  68  
YKA  H36  H36  H  0  1  N  N  N  -11.225  -2.523  41.594   3.330   0.424   1.032  H36  YKA  69  
YKA  H37  H37  H  0  1  N  N  N  -12.245  -5.987  40.285   6.536  -1.044  -1.410  H37  YKA  70  
YKA  O3   O6   O  0  1  N  Y  N        ?       ?       ?   2.621  -2.488   0.637  O3   YKA  71  
YKA  O1   O7   O  0  1  N  Y  N        ?       ?       ?   2.989  -3.006  -1.599  O1   YKA  72  
YKA  O2   O8   O  0  1  N  Y  N        ?       ?       ?   4.313  -4.027   0.224  O2   YKA  73  
YKA  H21  H21  H  0  1  N  N  N        ?       ?       ?   1.930  -3.152   0.767  H21  YKA  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YKA  C18  N17  DOUB  N  N   1  
YKA  C18  C19  SING  N  N   2  
YKA  N17  C16  SING  N  N   3  
YKA  C16  O20  DOUB  N  N   4  
YKA  C16  C15  SING  N  N   5  
YKA  C19  C15  SING  N  N   6  
YKA  C14  C15  SING  N  N   7  
YKA  C14  C13  SING  N  N   8  
YKA  C13  C21  SING  N  N   9  
YKA  C13  N12  SING  N  N  10  
YKA  C21  O22  SING  N  N  11  
YKA  C01  C02  SING  N  N  12  
YKA  O23  C11  DOUB  N  N  13  
YKA  N12  C11  SING  N  N  14  
YKA  C25  C02  SING  N  N  15  
YKA  C11  C06  SING  N  N  16  
YKA  C02  O03  SING  N  N  17  
YKA  C02  C26  SING  N  N  18  
YKA  O24  C04  DOUB  N  N  19  
YKA  O03  C04  SING  N  N  20  
YKA  C27  C26  SING  N  N  21  
YKA  C27  C28  SING  N  N  22  
YKA  C04  N05  SING  N  N  23  
YKA  C26  C33  SING  N  N  24  
YKA  C06  N05  SING  N  N  25  
YKA  C06  C07  SING  N  N  26  
YKA  C28  C29  SING  N  N  27  
YKA  C07  C08  SING  N  N  28  
YKA  C33  C32  SING  N  N  29  
YKA  C29  C32  SING  N  N  30  
YKA  C29  F31  SING  N  N  31  
YKA  C29  F30  SING  N  N  32  
YKA  C08  C09  SING  N  N  33  
YKA  C08  C10  SING  N  N  34  
YKA  C01  H1   SING  N  N  35  
YKA  C01  H2   SING  N  N  36  
YKA  C01  H3   SING  N  N  37  
YKA  C06  H4   SING  N  N  38  
YKA  C07  H5   SING  N  N  39  
YKA  C07  H6   SING  N  N  40  
YKA  C08  H7   SING  N  N  41  
YKA  C09  H8   SING  N  N  42  
YKA  C09  H9   SING  N  N  43  
YKA  C09  H10  SING  N  N  44  
YKA  C10  H11  SING  N  N  45  
YKA  C10  H12  SING  N  N  46  
YKA  C10  H13  SING  N  N  47  
YKA  C13  H14  SING  N  N  48  
YKA  C14  H15  SING  N  N  49  
YKA  C14  H16  SING  N  N  50  
YKA  C15  H17  SING  N  N  51  
YKA  C18  H18  SING  N  N  52  
YKA  C19  H19  SING  N  N  53  
YKA  C19  H20  SING  N  N  54  
YKA  C21  S1   SING  N  N  55  
YKA  C21  H22  SING  N  N  56  
YKA  C25  H23  SING  N  N  57  
YKA  C25  H24  SING  N  N  58  
YKA  C25  H25  SING  N  N  59  
YKA  C26  H26  SING  N  N  60  
YKA  C27  H27  SING  N  N  61  
YKA  C27  H28  SING  N  N  62  
YKA  C28  H29  SING  N  N  63  
YKA  C28  H30  SING  N  N  64  
YKA  C32  H31  SING  N  N  65  
YKA  C32  H32  SING  N  N  66  
YKA  C33  H33  SING  N  N  67  
YKA  C33  H34  SING  N  N  68  
YKA  N05  H35  SING  N  N  69  
YKA  N12  H36  SING  N  N  70  
YKA  O22  H37  SING  N  N  71  
YKA  S1   O3   SING  N  N  72  
YKA  S1   O1   DOUB  N  N  73  
YKA  S1   O2   DOUB  N  N  74  
YKA  O3   H21  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YKA  SMILES            ACDLabs               12.01  "O=C1N=CCC1CC(NC(=O)C(CC(C)C)NC(=O)OC(C)(C)C1CCC(F)(F)CC1)C(O)S(=O)(=O)O"  
YKA  InChI             InChI                 1.03   "InChI=1S/C23H37F2N3O8S/c1-13(2)11-16(28-21(32)36-22(3,4)15-5-8-23(24,25)9-6-15)19(30)27-17(20(31)37(33,34)35)12-14-7-10-26-18(14)29/h10,13-17,20,31H,5-9,11-12H2,1-4H3,(H,27,30)(H,28,32)(H,33,34,35)/t14-,16-,17-,20+/m0/s1"  
YKA  InChIKey          InChI                 1.03   AFVXFMYQWMALEA-JWWIWJDOSA-N  
YKA  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC(C)(C)C1CCC(F)(F)CC1)C(=O)N[C@@H](C[C@@H]2CC=NC2=O)[C@H](O)[S](O)(=O)=O"  
YKA  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC(C)(C)C1CCC(F)(F)CC1)C(=O)N[CH](C[CH]2CC=NC2=O)[CH](O)[S](O)(=O)=O"  
YKA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CC=NC1=O)C(O)S(=O)(=O)O)NC(=O)OC(C)(C)C2CCC(CC2)(F)F"  
YKA  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CC=NC1=O)C(O)S(=O)(=O)O)NC(=O)OC(C)(C)C2CCC(CC2)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YKA  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-2-{[N-({[2-(4,4-difluorocyclohexyl)propan-2-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3R)-2-oxo-3,4-dihydro-2H-pyrrol-3-yl]propane-1-sulfonic acid"  
YKA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-2-[2-[4,4-bis(fluoranyl)cyclohexyl]propan-2-yloxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YKA  "Create component"  2021-03-11  RCSB  
YKA  "Initial release"   2021-03-24  RCSB  
##
