data_YKP
#

_chem_comp.id                                   YKP
_chem_comp.name                                 "(1S,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl)ethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H37 F2 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-11
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       541.606
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YKP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LZU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YKP  C10  C1   C  0  1  N  N  N  -24.123  -6.117   4.892  -0.361  -0.734  -2.867  C10  YKP   1  
YKP  C13  C2   C  0  1  N  N  S  -17.565  -5.712   4.941   3.996   0.129   1.324  C13  YKP   2  
YKP  C01  C3   C  0  1  N  N  N  -19.077  -3.010  -0.272  -4.265  -2.816   0.952  C01  YKP   3  
YKP  C02  C4   C  0  1  N  N  S  -20.598  -2.906  -0.079  -4.224  -1.384   0.414  C02  YKP   4  
YKP  C04  C5   C  0  1  N  N  N  -21.117  -4.293   1.855  -1.923  -0.770   0.268  C04  YKP   5  
YKP  C06  C6   C  0  1  N  N  S  -21.307  -5.901   3.719   0.435  -0.234  -0.035  C06  YKP   6  
YKP  C07  C7   C  0  1  N  N  N  -21.982  -7.260   4.038   0.451   0.851  -1.114  C07  YKP   7  
YKP  C08  C8   C  0  1  N  N  N  -23.526  -7.228   3.995  -0.659   0.574  -2.131  C08  YKP   8  
YKP  C09  C9   C  0  1  N  N  N  -24.146  -8.599   4.365  -0.724   1.723  -3.139  C09  YKP   9  
YKP  C11  C10  C  0  1  N  N  N  -19.775  -6.104   3.776   1.602  -0.032   0.897  C11  YKP  10  
YKP  C14  C11  C  0  1  N  N  N  -16.897  -4.300   5.007   5.238  -0.544   0.738  C14  YKP  11  
YKP  C15  C12  C  0  1  N  N  S  -17.049  -3.536   3.682   5.049  -2.062   0.748  C15  YKP  12  
YKP  C16  C13  C  0  1  N  N  N  -16.512  -2.122   3.777   3.943  -2.464  -0.203  C16  YKP  13  
YKP  C18  C14  C  0  1  N  N  N  -15.415  -3.060   1.863   5.934  -2.940  -1.301  C18  YKP  14  
YKP  C19  C15  C  0  1  N  N  N  -16.174  -4.189   2.590   6.306  -2.768   0.189  C19  YKP  15  
YKP  C21  C16  C  0  1  N  N  S  -17.269  -6.561   6.227   4.259   1.627   1.494  C21  YKP  16  
YKP  C25  C17  C  0  1  N  N  N  -21.359  -2.650  -1.436  -5.503  -0.650   0.822  C25  YKP  17  
YKP  C26  C18  C  0  1  N  N  N  -20.957  -1.283  -2.064  -6.717  -1.378   0.242  C26  YKP  18  
YKP  C27  C19  C  0  1  N  N  N  -21.778  -0.939  -3.319  -7.995  -0.644   0.650  C27  YKP  19  
YKP  C28  C20  C  0  1  N  N  N  -23.302  -0.982  -3.034  -7.955   0.788   0.112  C28  YKP  20  
YKP  C31  C21  C  0  1  N  N  N  -23.733  -2.348  -2.418  -6.741   1.516   0.692  C31  YKP  21  
YKP  C32  C22  C  0  1  N  N  N  -22.898  -2.698  -1.173  -5.462   0.782   0.284  C32  YKP  22  
YKP  F29  F1   F  0  1  N  N  N  -23.673   0.047  -2.203  -7.858   0.759  -1.284  F29  YKP  23  
YKP  F30  F2   F  0  1  N  N  N  -24.061  -0.658  -4.136  -9.124   1.460   0.484  F30  YKP  24  
YKP  N05  N1   N  0  1  N  N  N  -21.750  -5.423   2.408  -0.816  -0.150   0.723  N05  YKP  25  
YKP  N12  N2   N  0  1  N  N  N  -19.011  -5.551   4.822   2.861  -0.067   0.418  N12  YKP  26  
YKP  N17  N3   N  0  1  N  N  N  -15.581  -1.868   2.736   4.467  -2.957  -1.339  N17  YKP  27  
YKP  O03  O1   O  0  1  N  N  N  -21.007  -4.169   0.460  -3.072  -0.693   0.964  O03  YKP  28  
YKP  O20  O2   O  0  1  N  N  N  -16.831  -1.297   4.623   2.757  -2.358   0.026  O20  YKP  29  
YKP  O22  O3   O  0  1  N  N  N  -15.849  -6.748   6.333   5.436   1.817   2.282  O22  YKP  30  
YKP  O23  O4   O  0  1  N  N  N  -19.204  -6.765   2.914   1.408   0.163   2.078  O23  YKP  31  
YKP  O24  O5   O  0  1  N  N  N  -20.648  -3.419   2.582  -1.883  -1.397  -0.772  O24  YKP  32  
YKP  H1   H1   H  0  1  N  N  N  -25.221  -6.140   4.823  -0.314  -1.553  -2.149  H1   YKP  33  
YKP  H2   H2   H  0  1  N  N  N  -23.817  -6.285   5.935  -1.151  -0.931  -3.592  H2   YKP  34  
YKP  H3   H3   H  0  1  N  N  N  -23.755  -5.137   4.555   0.595  -0.650  -3.385  H3   YKP  35  
YKP  H4   H4   H  0  1  N  N  N  -17.171  -6.249   4.066   3.766  -0.312   2.294  H4   YKP  36  
YKP  H5   H5   H  0  1  N  N  N  -18.595  -3.188   0.701  -5.129  -3.335   0.539  H5   YKP  37  
YKP  H6   H6   H  0  1  N  N  N  -18.850  -3.844  -0.952  -3.354  -3.339   0.661  H6   YKP  38  
YKP  H7   H7   H  0  1  N  N  N  -18.697  -2.072  -0.703  -4.340  -2.794   2.039  H7   YKP  39  
YKP  H8   H8   H  0  1  N  N  N  -20.825  -2.087   0.619  -4.149  -1.407  -0.673  H8   YKP  40  
YKP  H9   H9   H  0  1  N  N  N  -21.595  -5.176   4.495   0.511  -1.215  -0.504  H9   YKP  41  
YKP  H10  H10  H  0  1  N  N  N  -21.632  -8.000   3.303   0.286   1.824  -0.653  H10  YKP  42  
YKP  H11  H11  H  0  1  N  N  N  -21.672  -7.571   5.047   1.416   0.846  -1.620  H11  YKP  43  
YKP  H12  H12  H  0  1  N  N  N  -23.820  -7.005   2.959  -1.614   0.490  -1.613  H12  YKP  44  
YKP  H13  H13  H  0  1  N  N  N  -25.243  -8.530   4.321   0.231   1.807  -3.657  H13  YKP  45  
YKP  H14  H14  H  0  1  N  N  N  -23.798  -9.362   3.653  -1.514   1.526  -3.864  H14  YKP  46  
YKP  H15  H15  H  0  1  N  N  N  -23.837  -8.878   5.383  -0.936   2.655  -2.615  H15  YKP  47  
YKP  H16  H16  H  0  1  N  N  N  -15.826  -4.422   5.227   5.387  -0.203  -0.286  H16  YKP  48  
YKP  H17  H17  H  0  1  N  N  N  -17.372  -3.718   5.810   6.110  -0.283   1.338  H17  YKP  49  
YKP  H18  H18  H  0  1  N  N  N  -18.103  -3.528   3.367   4.830  -2.411   1.757  H18  YKP  50  
YKP  H19  H19  H  0  1  N  N  N  -14.351  -3.316   1.755   6.317  -2.102  -1.883  H19  YKP  51  
YKP  H20  H20  H  0  1  N  N  N  -15.851  -2.877   0.870   6.332  -3.879  -1.683  H20  YKP  52  
YKP  H21  H21  H  0  1  N  N  N  -16.809  -4.734   1.876   7.189  -2.139   0.301  H21  YKP  53  
YKP  H22  H22  H  0  1  N  N  N  -15.458  -4.886   3.050   6.455  -3.736   0.668  H22  YKP  54  
YKP  H23  H23  H  0  1  N  N  N  -17.728  -7.547   6.059   3.408   2.091   1.993  H23  YKP  55  
YKP  S1   S1   S  0  1  N  Y  N  -17.633  -6.047   7.092   4.493   2.388  -0.136  S1   YKP  56  
YKP  H25  H25  H  0  1  N  N  N  -21.097  -3.453  -2.140  -5.578  -0.627   1.909  H25  YKP  57  
YKP  H26  H26  H  0  1  N  N  N  -19.893  -1.322  -2.340  -6.642  -1.401  -0.846  H26  YKP  58  
YKP  H27  H27  H  0  1  N  N  N  -21.112  -0.493  -1.315  -6.746  -2.398   0.625  H27  YKP  59  
YKP  H28  H28  H  0  1  N  N  N  -21.542  -1.666  -4.110  -8.860  -1.163   0.236  H28  YKP  60  
YKP  H29  H29  H  0  1  N  N  N  -21.506   0.072  -3.657  -8.070  -0.621   1.737  H29  YKP  61  
YKP  H30  H30  H  0  1  N  N  N  -24.794  -2.292  -2.132  -6.712   2.536   0.308  H30  YKP  62  
YKP  H31  H31  H  0  1  N  N  N  -23.598  -3.138  -3.172  -6.816   1.539   1.779  H31  YKP  63  
YKP  H32  H32  H  0  1  N  N  N  -23.140  -1.980  -0.376  -4.597   1.301   0.697  H32  YKP  64  
YKP  H33  H33  H  0  1  N  N  N  -23.166  -3.713  -0.845  -5.387   0.760  -0.803  H33  YKP  65  
YKP  H34  H34  H  0  1  N  N  N  -22.486  -5.889   1.916  -0.847   0.351   1.553  H34  YKP  66  
YKP  H35  H35  H  0  1  N  N  N  -19.486  -5.018   5.522   3.016  -0.223  -0.527  H35  YKP  67  
YKP  H36  H36  H  0  1  N  N  N  -15.100  -1.001   2.607   3.943  -3.281  -2.087  H36  YKP  68  
YKP  H37  H37  H  0  1  N  N  N  -15.654  -7.261   7.108   5.381   1.434   3.168  H37  YKP  69  
YKP  O1   O6   O  0  1  N  Y  N        ?       ?       ?   4.449   3.805  -0.035  O1   YKP  70  
YKP  O2   O7   O  0  1  N  Y  N        ?       ?       ?   5.537   1.736  -0.846  O2   YKP  71  
YKP  O3   O8   O  0  1  N  Y  N        ?       ?       ?   3.232   2.028  -0.908  O3   YKP  72  
YKP  H24  H24  H  0  1  N  Y  N        ?       ?       ?   3.212   2.372  -1.811  H24  YKP  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YKP  F30  C28  SING  N  N   1  
YKP  C27  C28  SING  N  N   2  
YKP  C27  C26  SING  N  N   3  
YKP  C28  C31  SING  N  N   4  
YKP  C28  F29  SING  N  N   5  
YKP  C31  C32  SING  N  N   6  
YKP  C26  C25  SING  N  N   7  
YKP  C25  C32  SING  N  N   8  
YKP  C25  C02  SING  N  N   9  
YKP  C01  C02  SING  N  N  10  
YKP  C02  O03  SING  N  N  11  
YKP  O03  C04  SING  N  N  12  
YKP  C04  N05  SING  N  N  13  
YKP  C04  O24  DOUB  N  N  14  
YKP  C18  C19  SING  N  N  15  
YKP  C18  N17  SING  N  N  16  
YKP  N05  C06  SING  N  N  17  
YKP  C19  C15  SING  N  N  18  
YKP  N17  C16  SING  N  N  19  
YKP  O23  C11  DOUB  N  N  20  
YKP  C15  C16  SING  N  N  21  
YKP  C15  C14  SING  N  N  22  
YKP  C06  C11  SING  N  N  23  
YKP  C06  C07  SING  N  N  24  
YKP  C11  N12  SING  N  N  25  
YKP  C16  O20  DOUB  N  N  26  
YKP  C08  C07  SING  N  N  27  
YKP  C08  C09  SING  N  N  28  
YKP  C08  C10  SING  N  N  29  
YKP  N12  C13  SING  N  N  30  
YKP  C13  C14  SING  N  N  31  
YKP  C13  C21  SING  N  N  32  
YKP  C21  O22  SING  N  N  33  
YKP  C10  H1   SING  N  N  34  
YKP  C10  H2   SING  N  N  35  
YKP  C10  H3   SING  N  N  36  
YKP  C13  H4   SING  N  N  37  
YKP  C01  H5   SING  N  N  38  
YKP  C01  H6   SING  N  N  39  
YKP  C01  H7   SING  N  N  40  
YKP  C02  H8   SING  N  N  41  
YKP  C06  H9   SING  N  N  42  
YKP  C07  H10  SING  N  N  43  
YKP  C07  H11  SING  N  N  44  
YKP  C08  H12  SING  N  N  45  
YKP  C09  H13  SING  N  N  46  
YKP  C09  H14  SING  N  N  47  
YKP  C09  H15  SING  N  N  48  
YKP  C14  H16  SING  N  N  49  
YKP  C14  H17  SING  N  N  50  
YKP  C15  H18  SING  N  N  51  
YKP  C18  H19  SING  N  N  52  
YKP  C18  H20  SING  N  N  53  
YKP  C19  H21  SING  N  N  54  
YKP  C19  H22  SING  N  N  55  
YKP  C21  H23  SING  N  N  56  
YKP  C21  S1   SING  N  N  57  
YKP  C25  H25  SING  N  N  58  
YKP  C26  H26  SING  N  N  59  
YKP  C26  H27  SING  N  N  60  
YKP  C27  H28  SING  N  N  61  
YKP  C27  H29  SING  N  N  62  
YKP  C31  H30  SING  N  N  63  
YKP  C31  H31  SING  N  N  64  
YKP  C32  H32  SING  N  N  65  
YKP  C32  H33  SING  N  N  66  
YKP  N05  H34  SING  N  N  67  
YKP  N12  H35  SING  N  N  68  
YKP  N17  H36  SING  N  N  69  
YKP  O22  H37  SING  N  N  70  
YKP  S1   O1   DOUB  N  N  71  
YKP  S1   O2   DOUB  N  N  72  
YKP  S1   O3   SING  N  N  73  
YKP  O3   H24  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YKP  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OC(C)C1CCC(F)(F)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YKP  InChI             InChI                 1.03   "InChI=1S/C22H37F2N3O8S/c1-12(2)10-16(27-21(31)35-13(3)14-4-7-22(23,24)8-5-14)19(29)26-17(20(30)36(32,33)34)11-15-6-9-25-18(15)28/h12-17,20,30H,4-11H2,1-3H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t13-,15-,16-,17-,20-/m0/s1"  
YKP  InChIKey          InChI                 1.03   YRNJEPAFOLVHMN-ZZKADIETSA-N  
YKP  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)O[C@@H](C)C1CCC(F)(F)CC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"  
YKP  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)O[CH](C)C1CCC(F)(F)CC1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"  
YKP  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H](C1CCC(CC1)(F)F)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O"  
YKP  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC(C)C2CCC(CC2)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YKP  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S)-2-[(N-{[(1S)-1-(4,4-difluorocyclohexyl)ethoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
YKP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-2-[[(1~{S})-1-[4,4-bis(fluoranyl)cyclohexyl]ethoxy]carbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YKP  "Create component"  2021-03-11  RCSB  
YKP  "Initial release"   2021-03-24  RCSB  
##
