data_YKS
#

_chem_comp.id                                   YKS
_chem_comp.name                                 "(1R,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H41 F2 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-11
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       617.702
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YKS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M01
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YKS  C11  C1   C  0  1  N  N  S   8.514  19.721  28.029   3.645   0.588  -0.026  C11  YKS   1  
YKS  C12  C2   C  0  1  N  N  N   7.520  19.745  26.808   4.598   0.365   1.149  C12  YKS   2  
YKS  C13  C3   C  0  1  N  N  S   7.195  21.155  26.267   3.856   0.620   2.463  C13  YKS   3  
YKS  C14  C4   C  0  1  N  N  N   6.313  21.088  24.981   4.778   0.402   3.642  C14  YKS   4  
YKS  C17  C5   C  0  1  N  N  N   6.266  21.869  27.274   3.446   2.107   2.573  C17  YKS   5  
YKS  C19  C6   C  0  1  N  N  R   8.685  18.270  28.562   4.423   0.493  -1.340  C19  YKS   6  
YKS  C23  C7   C  0  1  N  N  S   9.291  25.974  25.571  -3.775   1.319   0.208  C23  YKS   7  
YKS  C02  C8   C  0  1  N  N  N  10.611  24.075  26.366  -1.784   0.068  -0.198  C02  YKS   8  
YKS  C04  C9   C  0  1  N  N  S  11.631  22.127  27.525   0.284  -1.197  -0.443  C04  YKS   9  
YKS  C05  C10  C  0  1  N  N  N  12.703  21.896  28.580   0.722  -2.395  -1.289  C05  YKS  10  
YKS  C06  C11  C  0  1  N  N  N  14.118  22.329  28.137  -0.308  -3.518  -1.155  C06  YKS  11  
YKS  C07  C12  C  0  1  N  N  N  14.583  21.541  26.906  -1.628  -3.078  -1.794  C07  YKS  12  
YKS  C08  C13  C  0  1  N  N  N  15.139  22.171  29.276   0.209  -4.771  -1.864  C08  YKS  13  
YKS  C09  C14  C  0  1  N  N  N  10.218  21.623  28.007   1.362  -0.145  -0.465  C09  YKS  14  
YKS  C16  C15  C  0  1  N  N  N   5.218  22.604  26.404   3.635   2.376   4.082  C16  YKS  15  
YKS  C24  C16  C  0  1  N  N  N   7.864  25.656  26.182  -4.447   2.429  -0.603  C24  YKS  16  
YKS  C25  C17  C  0  1  Y  N  N   7.598  26.142  27.619  -3.394   3.353  -1.158  C25  YKS  17  
YKS  C26  C18  C  0  1  Y  N  N   8.034  25.424  28.763  -2.980   4.449  -0.425  C26  YKS  18  
YKS  C27  C19  C  0  1  Y  N  N   7.784  25.897  30.067  -2.014   5.297  -0.935  C27  YKS  19  
YKS  C28  C20  C  0  1  Y  N  N   7.098  27.109  30.253  -1.462   5.048  -2.177  C28  YKS  20  
YKS  C29  C21  C  0  1  Y  N  N   6.664  27.833  29.142  -1.875   3.951  -2.910  C29  YKS  21  
YKS  C30  C22  C  0  1  Y  N  N   6.917  27.353  27.849  -2.838   3.101  -2.399  C30  YKS  22  
YKS  C31  C23  C  0  1  N  N  N   9.599  27.529  25.470  -4.847   0.454   0.874  C31  YKS  23  
YKS  C32  C24  C  0  1  N  N  N   8.752  28.275  24.408  -4.179  -0.561   1.803  C32  YKS  24  
YKS  C33  C25  C  0  1  N  N  N   8.999  29.779  24.479  -5.251  -1.426   2.470  C33  YKS  25  
YKS  C34  C26  C  0  1  N  N  N  10.513  30.124  24.204  -6.049  -2.166   1.395  C34  YKS  26  
YKS  C37  C27  C  0  1  N  N  N  11.434  29.288  25.175  -6.718  -1.151   0.466  C37  YKS  27  
YKS  C38  C28  C  0  1  N  N  N  11.096  27.803  25.205  -5.646  -0.286  -0.200  C38  YKS  28  
YKS  F35  F1   F  0  1  N  N  N  10.737  31.412  24.350  -7.029  -2.957   2.004  F35  YKS  29  
YKS  F36  F2   F  0  1  N  N  N  10.805  29.886  22.966  -5.188  -2.981   0.653  F36  YKS  30  
YKS  N03  N1   N  0  1  N  N  N  11.539  23.561  27.249  -0.954  -0.639  -0.991  N03  YKS  31  
YKS  N10  N2   N  0  1  N  N  N   9.812  20.313  27.661   2.596  -0.435  -0.005  N10  YKS  32  
YKS  N15  N3   N  0  1  N  N  N   5.213  21.929  25.122   4.638   1.402   4.530  N15  YKS  33  
YKS  O01  O1   O  0  1  N  N  N  10.012  23.350  25.591  -1.463   0.320   0.946  O01  YKS  34  
YKS  O18  O2   O  0  1  N  N  N   6.555  20.425  23.984   5.534  -0.538   3.769  O18  YKS  35  
YKS  O20  O3   O  0  1  N  N  N   9.442  18.300  29.741   3.558   0.815  -2.431  O20  YKS  36  
YKS  O21  O4   O  0  1  N  N  N   9.521  22.371  28.627   1.121   0.962  -0.896  O21  YKS  37  
YKS  O22  O5   O  0  1  N  N  N  10.341  25.399  26.337  -2.969   0.495  -0.674  O22  YKS  38  
YKS  H1   H1   H  0  1  N  N  N   8.066  20.323  28.833   3.191   1.576   0.056  H1   YKS  39  
YKS  H2   H2   H  0  1  N  N  N   6.578  19.274  27.124   4.963  -0.662   1.132  H2   YKS  40  
YKS  H3   H3   H  0  1  N  N  N   7.967  19.159  25.991   5.441   1.052   1.069  H3   YKS  41  
YKS  H4   H4   H  0  1  N  N  N   8.112  21.736  26.088   2.980  -0.024   2.537  H4   YKS  42  
YKS  H5   H5   H  0  1  N  N  N   5.776  21.137  27.933   4.105   2.739   1.978  H5   YKS  43  
YKS  H6   H6   H  0  1  N  N  N   6.835  22.587  27.882   2.405   2.247   2.279  H6   YKS  44  
YKS  S1   S1   S  0  1  N  Y  N   9.166  17.658  27.827   5.055  -1.195  -1.547  S1   YKS  45  
YKS  H8   H8   H  0  1  N  N  N   7.674  17.925  28.824   5.258   1.193  -1.319  H8   YKS  46  
YKS  H9   H9   H  0  1  N  N  N   9.313  25.566  24.550  -3.139   1.763   0.974  H9   YKS  47  
YKS  H10  H10  H  0  1  N  N  N  11.902  21.583  26.608   0.113  -1.521   0.584  H10  YKS  48  
YKS  H11  H11  H  0  1  N  N  N  12.432  22.467  29.481   0.797  -2.093  -2.334  H11  YKS  49  
YKS  H12  H12  H  0  1  N  N  N  12.728  20.823  28.820   1.693  -2.749  -0.942  H12  YKS  50  
YKS  H13  H13  H  0  1  N  N  N  14.076  23.394  27.864  -0.471  -3.738  -0.100  H13  YKS  51  
YKS  H14  H14  H  0  1  N  N  N  15.591  21.873  26.617  -2.323  -3.917  -1.803  H14  YKS  52  
YKS  H15  H15  H  0  1  N  N  N  14.604  20.467  27.145  -2.055  -2.258  -1.217  H15  YKS  53  
YKS  H16  H16  H  0  1  N  N  N  13.886  21.718  26.073  -1.444  -2.747  -2.816  H16  YKS  54  
YKS  H17  H17  H  0  1  N  N  N  14.799  22.738  30.155   1.149  -5.084  -1.409  H17  YKS  55  
YKS  H18  H18  H  0  1  N  N  N  15.232  21.107  29.540  -0.525  -5.571  -1.769  H18  YKS  56  
YKS  H19  H19  H  0  1  N  N  N  16.116  22.554  28.948   0.371  -4.551  -2.919  H19  YKS  57  
YKS  H20  H20  H  0  1  N  N  N   5.500  23.660  26.278   3.998   3.391   4.242  H20  YKS  58  
YKS  H21  H21  H  0  1  N  N  N   4.224  22.543  26.871   2.696   2.224   4.613  H21  YKS  59  
YKS  H22  H22  H  0  1  N  N  N   7.111  26.122  25.529  -5.013   1.988  -1.423  H22  YKS  60  
YKS  H23  H23  H  0  1  N  N  N   7.734  24.564  26.171  -5.122   2.993   0.042  H23  YKS  61  
YKS  H24  H24  H  0  1  N  N  N   8.569  24.495  28.631  -3.411   4.644   0.546  H24  YKS  62  
YKS  H25  H25  H  0  1  N  N  N   8.119  25.329  30.922  -1.691   6.154  -0.362  H25  YKS  63  
YKS  H26  H26  H  0  1  N  N  N   6.908  27.478  31.250  -0.707   5.710  -2.575  H26  YKS  64  
YKS  H27  H27  H  0  1  N  N  N   6.133  28.764  29.278  -1.444   3.756  -3.881  H27  YKS  65  
YKS  H28  H28  H  0  1  N  N  N   6.579  27.931  27.002  -3.158   2.242  -2.969  H28  YKS  66  
YKS  H29  H29  H  0  1  N  N  N   9.354  27.967  26.449  -5.518   1.089   1.453  H29  YKS  67  
YKS  H30  H30  H  0  1  N  N  N   7.686  28.075  24.591  -3.508  -1.196   1.225  H30  YKS  68  
YKS  H31  H31  H  0  1  N  N  N   9.026  27.911  23.407  -3.610  -0.034   2.569  H31  YKS  69  
YKS  H32  H32  H  0  1  N  N  N   8.725  30.140  25.481  -4.774  -2.149   3.132  H32  YKS  70  
YKS  H33  H33  H  0  1  N  N  N   8.374  30.281  23.725  -5.922  -0.791   3.048  H33  YKS  71  
YKS  H34  H34  H  0  1  N  N  N  12.478  29.401  24.848  -7.287  -1.679  -0.299  H34  YKS  72  
YKS  H35  H35  H  0  1  N  N  N  11.323  29.691  26.193  -7.389  -0.516   1.045  H35  YKS  73  
YKS  H36  H36  H  0  1  N  N  N  11.366  27.362  24.234  -6.122   0.437  -0.862  H36  YKS  74  
YKS  H37  H37  H  0  1  N  N  N  11.686  27.325  26.001  -4.975  -0.921  -0.779  H37  YKS  75  
YKS  H38  H38  H  0  1  N  N  N  12.166  24.186  27.713  -1.177  -0.778  -1.925  H38  YKS  76  
YKS  H39  H39  H  0  1  N  N  N  10.448  19.752  27.132   2.789  -1.321   0.340  H39  YKS  77  
YKS  H40  H40  H  0  1  N  N  N   4.507  22.052  24.425   5.135   1.470   5.360  H40  YKS  78  
YKS  H41  H41  H  0  1  N  N  N   9.550  17.416  30.071   2.792   0.231  -2.511  H41  YKS  79  
YKS  O1   O6   O  0  1  N  Y  N       ?       ?       ?   6.063  -1.472  -0.585  O1   YKS  80  
YKS  O2   O7   O  0  1  N  Y  N       ?       ?       ?   3.986  -2.104  -1.771  O2   YKS  81  
YKS  O3   O8   O  0  1  N  Y  N       ?       ?       ?   5.801  -1.161  -2.873  O3   YKS  82  
YKS  H7   H7   H  0  1  N  Y  N       ?       ?       ?   6.200  -2.006  -3.122  H7   YKS  83  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YKS  F36  C34  SING  N  N   1  
YKS  O18  C14  DOUB  N  N   2  
YKS  C34  F35  SING  N  N   3  
YKS  C34  C33  SING  N  N   4  
YKS  C34  C37  SING  N  N   5  
YKS  C32  C33  SING  N  N   6  
YKS  C32  C31  SING  N  N   7  
YKS  C14  N15  SING  N  N   8  
YKS  C14  C13  SING  N  N   9  
YKS  N15  C16  SING  N  N  10  
YKS  C37  C38  SING  N  N  11  
YKS  C38  C31  SING  N  N  12  
YKS  C31  C23  SING  N  N  13  
YKS  C23  C24  SING  N  N  14  
YKS  C23  O22  SING  N  N  15  
YKS  O01  C02  DOUB  N  N  16  
YKS  C24  C25  SING  N  N  17  
YKS  C13  C12  SING  N  N  18  
YKS  C13  C17  SING  N  N  19  
YKS  O22  C02  SING  N  N  20  
YKS  C02  N03  SING  N  N  21  
YKS  C16  C17  SING  N  N  22  
YKS  C12  C11  SING  N  N  23  
YKS  C07  C06  SING  N  N  24  
YKS  N03  C04  SING  N  N  25  
YKS  C04  C09  SING  N  N  26  
YKS  C04  C05  SING  N  N  27  
YKS  C25  C30  DOUB  Y  N  28  
YKS  C25  C26  SING  Y  N  29  
YKS  N10  C09  SING  N  N  30  
YKS  N10  C11  SING  N  N  31  
YKS  C30  C29  SING  Y  N  32  
YKS  C09  O21  DOUB  N  N  33  
YKS  C11  C19  SING  N  N  34  
YKS  C06  C05  SING  N  N  35  
YKS  C06  C08  SING  N  N  36  
YKS  C19  O20  SING  N  N  37  
YKS  C26  C27  DOUB  Y  N  38  
YKS  C29  C28  DOUB  Y  N  39  
YKS  C27  C28  SING  Y  N  40  
YKS  C11  H1   SING  N  N  41  
YKS  C12  H2   SING  N  N  42  
YKS  C12  H3   SING  N  N  43  
YKS  C13  H4   SING  N  N  44  
YKS  C17  H5   SING  N  N  45  
YKS  C17  H6   SING  N  N  46  
YKS  C19  S1   SING  N  N  47  
YKS  C19  H8   SING  N  N  48  
YKS  C23  H9   SING  N  N  49  
YKS  C04  H10  SING  N  N  50  
YKS  C05  H11  SING  N  N  51  
YKS  C05  H12  SING  N  N  52  
YKS  C06  H13  SING  N  N  53  
YKS  C07  H14  SING  N  N  54  
YKS  C07  H15  SING  N  N  55  
YKS  C07  H16  SING  N  N  56  
YKS  C08  H17  SING  N  N  57  
YKS  C08  H18  SING  N  N  58  
YKS  C08  H19  SING  N  N  59  
YKS  C16  H20  SING  N  N  60  
YKS  C16  H21  SING  N  N  61  
YKS  C24  H22  SING  N  N  62  
YKS  C24  H23  SING  N  N  63  
YKS  C26  H24  SING  N  N  64  
YKS  C27  H25  SING  N  N  65  
YKS  C28  H26  SING  N  N  66  
YKS  C29  H27  SING  N  N  67  
YKS  C30  H28  SING  N  N  68  
YKS  C31  H29  SING  N  N  69  
YKS  C32  H30  SING  N  N  70  
YKS  C32  H31  SING  N  N  71  
YKS  C33  H32  SING  N  N  72  
YKS  C33  H33  SING  N  N  73  
YKS  C37  H34  SING  N  N  74  
YKS  C37  H35  SING  N  N  75  
YKS  C38  H36  SING  N  N  76  
YKS  C38  H37  SING  N  N  77  
YKS  N03  H38  SING  N  N  78  
YKS  N10  H39  SING  N  N  79  
YKS  N15  H40  SING  N  N  80  
YKS  O20  H41  SING  N  N  81  
YKS  S1   O1   DOUB  N  N  82  
YKS  S1   O2   DOUB  N  N  83  
YKS  S1   O3   SING  N  N  84  
YKS  O3   H7   SING  N  N  85  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YKS  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OC(Cc1ccccc1)C1CCC(F)(F)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YKS  InChI             InChI                 1.03   "InChI=1S/C28H41F2N3O8S/c1-17(2)14-21(25(35)32-22(26(36)42(38,39)40)16-20-10-13-31-24(20)34)33-27(37)41-23(15-18-6-4-3-5-7-18)19-8-11-28(29,30)12-9-19/h3-7,17,19-23,26,36H,8-16H2,1-2H3,(H,31,34)(H,32,35)(H,33,37)(H,38,39,40)/t20-,21-,22-,23-,26+/m0/s1"  
YKS  InChIKey          InChI                 1.03   PDAAZWNVPCMYBL-NRAAZAKSSA-N  
YKS  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)O[C@@H](Cc1ccccc1)C2CCC(F)(F)CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"  
YKS  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)O[CH](Cc1ccccc1)C2CCC(F)(F)CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
YKS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)O[C@@H](Cc2ccccc2)C3CCC(CC3)(F)F"  
YKS  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC(Cc2ccccc2)C3CCC(CC3)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YKS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-2-[(N-{[(1S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
YKS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-2-[[(1~{S})-1-[4,4-bis(fluoranyl)cyclohexyl]-2-phenyl-ethoxy]carbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YKS  "Create component"  2021-03-11  RCSB  
YKS  "Initial release"   2021-03-24  RCSB  
##
