data_YKV
#

_chem_comp.id                                   YKV
_chem_comp.name                                 "(1S,2S)-2-((S)-2-((((S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H41 F2 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-11
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       617.702
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YKV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M01
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YKV  C11  C1   C  0  1  N  N  S   8.547  19.813  27.970   3.804  -0.565  -0.255  C11  YKV   1  
YKV  C12  C2   C  0  1  N  N  N   7.531  19.740  26.805   4.848  -0.485   0.861  C12  YKV   2  
YKV  C13  C3   C  0  1  N  N  S   7.149  21.116  26.251   4.448   0.605   1.857  C13  YKV   3  
YKV  C14  C4   C  0  1  N  N  N   6.191  20.961  25.051   5.468   0.705   2.970  C14  YKV   4  
YKV  C16  C5   C  0  1  N  N  N   5.217  22.597  26.410   5.006   2.889   2.330  C16  YKV   5  
YKV  C17  C6   C  0  1  N  N  N   6.264  21.857  27.277   4.487   1.996   1.182  C17  YKV   6  
YKV  O22  O1   O  0  1  N  N  N  10.355  25.395  26.322  -3.135   0.738  -0.599  O22  YKV   7  
YKV  C23  C7   C  0  1  N  N  S   9.291  25.971  25.566  -4.207   1.407   0.116  C23  YKV   8  
YKV  C02  C8   C  0  1  N  N  N  10.598  24.063  26.415  -2.108   0.271   0.137  C02  YKV   9  
YKV  C04  C9   C  0  1  N  N  S  11.672  22.135  27.625   0.033  -0.875   0.330  C04  YKV  10  
YKV  C05  C10  C  0  1  N  N  N  12.792  21.939  28.615  -0.112  -2.398   0.326  C05  YKV  11  
YKV  C06  C11  C  0  1  N  N  N  14.182  22.359  28.118  -1.406  -2.789   1.042  C06  YKV  12  
YKV  C07  C12  C  0  1  N  N  N  14.612  21.543  26.894  -1.622  -4.298   0.918  C07  YKV  13  
YKV  C08  C13  C  0  1  N  N  N  15.214  22.203  29.244  -1.307  -2.407   2.520  C08  YKV  14  
YKV  C09  C14  C  0  1  N  N  N  10.348  21.523  28.212   1.368  -0.496  -0.258  C09  YKV  15  
YKV  C19  C15  C  0  1  N  N  S   8.831  18.413  28.574   4.229  -1.621  -1.277  C19  YKV  16  
YKV  C24  C16  C  0  1  N  N  N   7.864  25.654  26.182  -4.679   2.619  -0.691  C24  YKV  17  
YKV  C25  C17  C  0  1  Y  N  N   7.598  26.143  27.620  -3.565   3.630  -0.777  C25  YKV  18  
YKV  C26  C18  C  0  1  Y  N  N   8.031  25.423  28.764  -3.442   4.608   0.192  C26  YKV  19  
YKV  C27  C19  C  0  1  Y  N  N   7.782  25.897  30.068  -2.420   5.535   0.113  C27  YKV  20  
YKV  C28  C20  C  0  1  Y  N  N   7.099  27.111  30.254  -1.520   5.484  -0.935  C28  YKV  21  
YKV  C29  C21  C  0  1  Y  N  N   6.667  27.837  29.143  -1.643   4.506  -1.904  C29  YKV  22  
YKV  C30  C22  C  0  1  Y  N  N   6.920  27.356  27.850  -2.662   3.576  -1.823  C30  YKV  23  
YKV  C31  C23  C  0  1  N  N  N   9.594  27.530  25.465  -5.374   0.438   0.310  C31  YKV  24  
YKV  C32  C24  C  0  1  N  N  N   8.744  28.278  24.403  -4.943  -0.702   1.235  C32  YKV  25  
YKV  C33  C25  C  0  1  N  N  N   8.992  29.782  24.471  -6.110  -1.672   1.429  C33  YKV  26  
YKV  C34  C26  C  0  1  N  N  N  10.506  30.125  24.194  -6.527  -2.245   0.073  C34  YKV  27  
YKV  C37  C27  C  0  1  N  N  N  11.426  29.293  25.169  -6.959  -1.106  -0.852  C37  YKV  28  
YKV  C38  C28  C  0  1  N  N  N  11.090  27.808  25.203  -5.792  -0.136  -1.046  C38  YKV  29  
YKV  F35  F1   F  0  1  N  N  N  10.731  31.413  24.332  -7.595  -3.132   0.250  F35  YKV  30  
YKV  F36  F2   F  0  1  N  N  N  10.798  29.879  22.957  -5.446  -2.925  -0.498  F36  YKV  31  
YKV  N03  N1   N  0  1  N  N  N  11.485  23.571  27.360  -1.039  -0.280  -0.471  N03  YKV  32  
YKV  N10  N2   N  0  1  N  N  N   9.765  20.458  27.530   2.506  -0.933   0.317  N10  YKV  33  
YKV  N15  N3   N  0  1  N  N  N   5.112  21.822  25.192   5.766   1.993   3.211  N15  YKV  34  
YKV  O01  O2   O  0  1  N  N  N  10.019  23.318  25.643  -2.145   0.347   1.349  O01  YKV  35  
YKV  O18  O3   O  0  1  N  N  N   6.359  20.205  24.120   5.946  -0.241   3.560  O18  YKV  36  
YKV  O20  O4   O  0  1  N  N  N   7.664  17.857  29.084   3.213  -1.756  -2.273  O20  YKV  37  
YKV  O21  O5   O  0  1  N  N  N   9.861  21.973  29.209   1.419   0.202  -1.249  O21  YKV  38  
YKV  H1   H1   H  0  1  N  N  N   8.093  20.425  28.763   3.723   0.405  -0.746  H1   YKV  39  
YKV  H2   H2   H  0  1  N  N  N   6.619  19.243  27.167   4.904  -1.444   1.375  H2   YKV  40  
YKV  H3   H3   H  0  1  N  N  N   7.974  19.146  25.992   5.821  -0.246   0.431  H3   YKV  41  
YKV  H4   H4   H  0  1  N  N  N   8.037  21.707  25.984   3.456   0.405   2.262  H4   YKV  42  
YKV  H5   H5   H  0  1  N  N  N   5.555  23.620  26.188   5.656   3.671   1.936  H5   YKV  43  
YKV  H6   H6   H  0  1  N  N  N   4.247  22.635  26.927   4.170   3.332   2.871  H6   YKV  44  
YKV  H7   H7   H  0  1  N  N  N   5.774  21.144  27.957   5.179   2.001   0.340  H7   YKV  45  
YKV  H8   H8   H  0  1  N  N  N   6.861  22.572  27.863   3.490   2.305   0.867  H8   YKV  46  
YKV  H9   H9   H  0  1  N  N  N   9.306  25.566  24.543  -3.844   1.738   1.089  H9   YKV  47  
YKV  H10  H10  H  0  1  N  N  N  11.916  21.611  26.689  -0.031  -0.506   1.354  H10  YKV  48  
YKV  H11  H11  H  0  1  N  N  N  12.559  22.529  29.514  -0.142  -2.758  -0.702  H11  YKV  49  
YKV  H12  H12  H  0  1  N  N  N  12.832  20.871  28.877   0.738  -2.845   0.842  H12  YKV  50  
YKV  H13  H13  H  0  1  N  N  N  14.141  23.420  27.831  -2.246  -2.263   0.587  H13  YKV  51  
YKV  H14  H14  H  0  1  N  N  N  15.610  21.870  26.567  -0.783  -4.824   1.373  H14  YKV  52  
YKV  H15  H15  H  0  1  N  N  N  14.645  20.476  27.158  -2.545  -4.576   1.428  H15  YKV  53  
YKV  H16  H16  H  0  1  N  N  N  13.890  21.697  26.079  -1.693  -4.570  -0.135  H16  YKV  54  
YKV  H17  H17  H  0  1  N  N  N  14.897  22.792  30.117  -0.468  -2.933   2.975  H17  YKV  55  
YKV  H18  H18  H  0  1  N  N  N  15.292  21.143  29.526  -1.153  -1.332   2.609  H18  YKV  56  
YKV  H19  H19  H  0  1  N  N  N  16.194  22.563  28.896  -2.230  -2.685   3.030  H19  YKV  57  
YKV  H20  H20  H  0  1  N  N  N   9.535  18.569  29.405   4.373  -2.577  -0.773  H20  YKV  58  
YKV  S1   S1   S  0  1  N  Y  N   9.201  17.776  27.798   5.782  -1.111  -2.062  S1   YKV  59  
YKV  H22  H22  H  0  1  N  N  N   7.110  26.118  25.529  -4.959   2.300  -1.695  H22  YKV  60  
YKV  H23  H23  H  0  1  N  N  N   7.734  24.562  26.174  -5.541   3.069  -0.199  H23  YKV  61  
YKV  H24  H24  H  0  1  N  N  N   8.563  24.492  28.633  -4.145   4.647   1.011  H24  YKV  62  
YKV  H25  H25  H  0  1  N  N  N   8.116  25.328  30.923  -2.324   6.299   0.870  H25  YKV  63  
YKV  H26  H26  H  0  1  N  N  N   6.909  27.480  31.251  -0.722   6.209  -0.997  H26  YKV  64  
YKV  H27  H27  H  0  1  N  N  N   6.138  28.769  29.279  -0.940   4.467  -2.724  H27  YKV  65  
YKV  H28  H28  H  0  1  N  N  N   6.584  27.935  27.003  -2.755   2.809  -2.578  H28  YKV  66  
YKV  H29  H29  H  0  1  N  N  N   9.347  27.965  26.445  -6.217   0.967   0.755  H29  YKV  67  
YKV  H30  H30  H  0  1  N  N  N   7.678  28.080  24.589  -4.100  -1.232   0.789  H30  YKV  68  
YKV  H31  H31  H  0  1  N  N  N   9.015  27.913  23.402  -4.645  -0.294   2.201  H31  YKV  69  
YKV  H32  H32  H  0  1  N  N  N   8.720  30.145  25.473  -5.802  -2.484   2.087  H32  YKV  70  
YKV  H33  H33  H  0  1  N  N  N   8.367  30.283  23.717  -6.952  -1.142   1.874  H33  YKV  71  
YKV  H34  H34  H  0  1  N  N  N  12.471  29.406  24.843  -7.256  -1.514  -1.818  H34  YKV  72  
YKV  H35  H35  H  0  1  N  N  N  11.313  29.699  26.185  -7.801  -0.576  -0.407  H35  YKV  73  
YKV  H36  H36  H  0  1  N  N  N  11.364  27.365  24.234  -6.099   0.676  -1.705  H36  YKV  74  
YKV  H37  H37  H  0  1  N  N  N  11.679  27.334  26.002  -4.949  -0.666  -1.491  H37  YKV  75  
YKV  H38  H38  H  0  1  N  N  N  12.026  24.225  27.889  -0.980  -0.283  -1.440  H38  YKV  76  
YKV  H39  H39  H  0  1  N  N  N  10.208  20.124  26.698   2.466  -1.491   1.109  H39  YKV  77  
YKV  H40  H40  H  0  1  N  N  N   4.360  21.897  24.537   6.401   2.293   3.880  H40  YKV  78  
YKV  H41  H41  H  0  1  N  N  N   7.854  17.001  29.450   2.353  -2.027  -1.923  H41  YKV  79  
YKV  O1   O6   O  0  1  N  Y  N       ?       ?       ?   6.209  -2.086  -3.003  O1   YKV  80  
YKV  O2   O7   O  0  1  N  Y  N       ?       ?       ?   5.739   0.268  -2.405  O2   YKV  81  
YKV  O3   O8   O  0  1  N  Y  N       ?       ?       ?   6.815  -1.188  -0.947  O3   YKV  82  
YKV  H21  H21  H  0  1  N  Y  N       ?       ?       ?   7.709  -0.940  -1.221  H21  YKV  83  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YKV  F36  C34  SING  N  N   1  
YKV  O18  C14  DOUB  N  N   2  
YKV  C34  F35  SING  N  N   3  
YKV  C34  C33  SING  N  N   4  
YKV  C34  C37  SING  N  N   5  
YKV  C32  C33  SING  N  N   6  
YKV  C32  C31  SING  N  N   7  
YKV  C14  N15  SING  N  N   8  
YKV  C14  C13  SING  N  N   9  
YKV  C37  C38  SING  N  N  10  
YKV  N15  C16  SING  N  N  11  
YKV  C38  C31  SING  N  N  12  
YKV  C31  C23  SING  N  N  13  
YKV  C23  C24  SING  N  N  14  
YKV  C23  O22  SING  N  N  15  
YKV  O01  C02  DOUB  N  N  16  
YKV  C24  C25  SING  N  N  17  
YKV  C13  C12  SING  N  N  18  
YKV  C13  C17  SING  N  N  19  
YKV  O22  C02  SING  N  N  20  
YKV  C16  C17  SING  N  N  21  
YKV  C02  N03  SING  N  N  22  
YKV  C12  C11  SING  N  N  23  
YKV  C07  C06  SING  N  N  24  
YKV  N03  C04  SING  N  N  25  
YKV  N10  C11  SING  N  N  26  
YKV  N10  C09  SING  N  N  27  
YKV  C25  C30  DOUB  Y  N  28  
YKV  C25  C26  SING  Y  N  29  
YKV  C04  C09  SING  N  N  30  
YKV  C04  C05  SING  N  N  31  
YKV  C30  C29  SING  Y  N  32  
YKV  C11  C19  SING  N  N  33  
YKV  C06  C05  SING  N  N  34  
YKV  C06  C08  SING  N  N  35  
YKV  C09  O21  DOUB  N  N  36  
YKV  C19  O20  SING  N  N  37  
YKV  C26  C27  DOUB  Y  N  38  
YKV  C29  C28  DOUB  Y  N  39  
YKV  C27  C28  SING  Y  N  40  
YKV  C11  H1   SING  N  N  41  
YKV  C12  H2   SING  N  N  42  
YKV  C12  H3   SING  N  N  43  
YKV  C13  H4   SING  N  N  44  
YKV  C16  H5   SING  N  N  45  
YKV  C16  H6   SING  N  N  46  
YKV  C17  H7   SING  N  N  47  
YKV  C17  H8   SING  N  N  48  
YKV  C23  H9   SING  N  N  49  
YKV  C04  H10  SING  N  N  50  
YKV  C05  H11  SING  N  N  51  
YKV  C05  H12  SING  N  N  52  
YKV  C06  H13  SING  N  N  53  
YKV  C07  H14  SING  N  N  54  
YKV  C07  H15  SING  N  N  55  
YKV  C07  H16  SING  N  N  56  
YKV  C08  H17  SING  N  N  57  
YKV  C08  H18  SING  N  N  58  
YKV  C08  H19  SING  N  N  59  
YKV  C19  H20  SING  N  N  60  
YKV  C19  S1   SING  N  N  61  
YKV  C24  H22  SING  N  N  62  
YKV  C24  H23  SING  N  N  63  
YKV  C26  H24  SING  N  N  64  
YKV  C27  H25  SING  N  N  65  
YKV  C28  H26  SING  N  N  66  
YKV  C29  H27  SING  N  N  67  
YKV  C30  H28  SING  N  N  68  
YKV  C31  H29  SING  N  N  69  
YKV  C32  H30  SING  N  N  70  
YKV  C32  H31  SING  N  N  71  
YKV  C33  H32  SING  N  N  72  
YKV  C33  H33  SING  N  N  73  
YKV  C37  H34  SING  N  N  74  
YKV  C37  H35  SING  N  N  75  
YKV  C38  H36  SING  N  N  76  
YKV  C38  H37  SING  N  N  77  
YKV  N03  H38  SING  N  N  78  
YKV  N10  H39  SING  N  N  79  
YKV  N15  H40  SING  N  N  80  
YKV  O20  H41  SING  N  N  81  
YKV  S1   O1   DOUB  N  N  82  
YKV  S1   O2   DOUB  N  N  83  
YKV  S1   O3   SING  N  N  84  
YKV  O3   H21  SING  N  N  85  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YKV  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OC(Cc1ccccc1)C1CCC(F)(F)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YKV  InChI             InChI                 1.03   "InChI=1S/C28H41F2N3O8S/c1-17(2)14-21(25(35)32-22(26(36)42(38,39)40)16-20-10-13-31-24(20)34)33-27(37)41-23(15-18-6-4-3-5-7-18)19-8-11-28(29,30)12-9-19/h3-7,17,19-23,26,36H,8-16H2,1-2H3,(H,31,34)(H,32,35)(H,33,37)(H,38,39,40)/t20-,21-,22-,23-,26-/m0/s1"  
YKV  InChIKey          InChI                 1.03   PDAAZWNVPCMYBL-KQWWLPFYSA-N  
YKV  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)O[C@@H](Cc1ccccc1)C2CCC(F)(F)CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"  
YKV  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)O[CH](Cc1ccccc1)C2CCC(F)(F)CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
YKV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)O[C@@H](Cc2ccccc2)C3CCC(CC3)(F)F"  
YKV  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC(Cc2ccccc2)C3CCC(CC3)(F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YKV  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S)-2-[(N-{[(1S)-1-(4,4-difluorocyclohexyl)-2-phenylethoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
YKV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-2-[[(1~{S})-1-[4,4-bis(fluoranyl)cyclohexyl]-2-phenyl-ethoxy]carbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YKV  "Create component"  2021-03-11  RCSB  
YKV  "Initial release"   2021-03-24  RCSB  
##
