data_YLD
#

_chem_comp.id                                   YLD
_chem_comp.name                                 "(1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H30 F N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-12
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       503.542
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YLD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M03
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YLD  C11  C1   C  0  1  N  N  S   8.936  19.753  27.802   3.578   0.421  -0.359  C11  YLD   1  
YLD  C12  C2   C  0  1  N  N  N   7.761  19.750  26.721   3.691  -0.777  -1.305  C12  YLD   2  
YLD  C13  C3   C  0  1  N  N  S   7.647  20.999  25.799   3.997  -2.039  -0.496  C13  YLD   3  
YLD  C14  C4   C  0  1  N  N  N   6.597  20.987  24.644   4.109  -3.239  -1.410  C14  YLD   4  
YLD  C02  C5   C  0  1  N  N  N  10.800  23.943  25.849  -2.383   0.290   0.770  C02  YLD   5  
YLD  C04  C6   C  0  1  N  N  S  12.160  22.148  27.026   0.026   0.007   1.003  C04  YLD   6  
YLD  C05  C7   C  0  1  N  N  N  13.230  21.917  28.102   0.187  -1.228   1.891  C05  YLD   7  
YLD  C06  C8   C  0  1  N  N  N  14.680  22.305  27.724  -0.936  -1.260   2.929  C06  YLD   8  
YLD  C07  C9   C  0  1  N  N  N  15.708  22.140  28.898  -0.849  -2.557   3.735  C07  YLD   9  
YLD  C08  C10  C  0  1  N  N  N  15.106  21.533  26.464  -0.795  -0.063   3.871  C08  YLD  10  
YLD  C09  C11  C  0  1  N  N  N  10.799  21.557  27.578   1.199   0.106   0.062  C09  YLD  11  
YLD  C16  C12  C  0  1  N  N  N   5.708  22.473  26.278   5.899  -3.388   0.062  C16  YLD  12  
YLD  C17  C13  C  0  1  N  N  N   7.195  22.208  26.631   5.392  -1.933   0.163  C17  YLD  13  
YLD  C19  C14  C  0  1  N  N  R   9.256  18.338  28.341   3.353   1.696  -1.175  C19  YLD  14  
YLD  C23  C15  C  0  1  N  N  N  11.445  25.954  24.569  -4.744   0.630   0.704  C23  YLD  15  
YLD  C24  C16  C  0  1  Y  N  N  11.461  27.533  24.527  -5.906   0.440  -0.237  C24  YLD  16  
YLD  C25  C17  C  0  1  Y  N  N  12.441  28.256  25.194  -6.610  -0.749  -0.233  C25  YLD  17  
YLD  C26  C18  C  0  1  Y  N  N  12.472  29.679  25.165  -7.677  -0.924  -1.097  C26  YLD  18  
YLD  C28  C19  C  0  1  Y  N  N  11.484  30.397  24.448  -8.039   0.093  -1.964  C28  YLD  19  
YLD  C29  C20  C  0  1  Y  N  N  10.484  29.683  23.767  -7.333   1.281  -1.966  C29  YLD  20  
YLD  C30  C21  C  0  1  Y  N  N  10.485  28.277  23.813  -6.271   1.457  -1.099  C30  YLD  21  
YLD  F27  F1   F  0  1  N  N  N  13.403  30.324  25.800  -8.366  -2.087  -1.095  F27  YLD  22  
YLD  N03  N1   N  0  1  N  N  N  11.943  23.558  26.631  -1.213  -0.105   0.229  N03  YLD  23  
YLD  N10  N2   N  0  1  N  N  N  10.223  20.329  27.261   2.449   0.219   0.552  N10  YLD  24  
YLD  N15  N3   N  0  1  N  N  N   5.500  21.862  24.967   5.185  -3.974  -1.079  N15  YLD  25  
YLD  O01  O1   O  0  1  N  N  N  10.034  23.152  25.423  -2.410   0.739   1.898  O01  YLD  26  
YLD  O18  O2   O  0  1  N  N  N   6.721  20.348  23.665   3.340  -3.501  -2.310  O18  YLD  27  
YLD  O20  O3   O  0  1  N  N  N  10.129  18.443  29.444   4.440   1.877  -2.085  O20  YLD  28  
YLD  O21  O4   O  0  1  N  N  N  10.205  22.315  28.363   1.018   0.084  -1.137  O21  YLD  29  
YLD  O22  O5   O  0  1  N  N  N  10.604  25.332  25.573  -3.522   0.186   0.059  O22  YLD  30  
YLD  H1   H1   H  0  1  N  N  N   8.605  20.373  28.648   4.498   0.516   0.218  H1   YLD  31  
YLD  H2   H2   H  0  1  N  N  N   6.810  19.651  27.265   2.750  -0.907  -1.839  H2   YLD  32  
YLD  H3   H3   H  0  1  N  N  N   7.907  18.872  26.074   4.493  -0.600  -2.021  H3   YLD  33  
YLD  H4   H4   H  0  1  N  N  N   8.638  21.211  25.370   3.229  -2.202   0.259  H4   YLD  34  
YLD  H5   H5   H  0  1  N  N  N  12.438  21.567  26.134  -0.015   0.900   1.627  H5   YLD  35  
YLD  H6   H6   H  0  1  N  N  N  12.946  22.504  28.988   0.139  -2.126   1.276  H6   YLD  36  
YLD  H7   H7   H  0  1  N  N  N  13.225  20.846  28.355   1.151  -1.187   2.399  H7   YLD  37  
YLD  H8   H8   H  0  1  N  N  N  14.669  23.373  27.461  -1.900  -1.212   2.422  H8   YLD  38  
YLD  H9   H9   H  0  1  N  N  N  15.360  22.708  29.773   0.115  -2.606   4.242  H9   YLD  39  
YLD  H10  H10  H  0  1  N  N  N  15.794  21.076  29.163  -1.649  -2.580   4.475  H10  YLD  40  
YLD  H11  H11  H  0  1  N  N  N  16.690  22.520  28.581  -0.950  -3.410   3.064  H11  YLD  41  
YLD  H12  H12  H  0  1  N  N  N  16.136  21.809  26.195   0.169  -0.112   4.378  H12  YLD  42  
YLD  H13  H13  H  0  1  N  N  N  15.055  20.452  26.662  -0.857   0.861   3.297  H13  YLD  43  
YLD  H14  H14  H  0  1  N  N  N  14.431  21.786  25.633  -1.595  -0.086   4.611  H14  YLD  44  
YLD  H15  H15  H  0  1  N  N  N   5.511  23.554  26.233   6.974  -3.401  -0.119  H15  YLD  45  
YLD  H16  H16  H  0  1  N  N  N   5.048  22.011  27.026   5.665  -3.934   0.976  H16  YLD  46  
YLD  H17  H17  H  0  1  N  N  N   7.295  21.986  27.704   6.037  -1.255  -0.395  H17  YLD  47  
YLD  H18  H18  H  0  1  N  N  N   7.805  23.088  26.380   5.308  -1.621   1.204  H18  YLD  48  
YLD  S1   S1   S  0  1  N  Y  N   9.700  17.740  27.573   3.257   3.120  -0.056  S1   YLD  49  
YLD  H20  H20  H  0  1  N  N  N   8.302  17.934  28.711   2.422   1.610  -1.734  H20  YLD  50  
YLD  H21  H21  H  0  1  N  N  N  11.105  25.599  23.585  -4.655   1.686   0.962  H21  YLD  51  
YLD  H22  H22  H  0  1  N  N  N  12.477  25.616  24.744  -4.910   0.047   1.609  H22  YLD  52  
YLD  H23  H23  H  0  1  N  N  N  13.200  27.725  25.749  -6.327  -1.542   0.444  H23  YLD  53  
YLD  H24  H24  H  0  1  N  N  N  11.499  31.477  24.425  -8.871  -0.043  -2.639  H24  YLD  54  
YLD  H25  H25  H  0  1  N  N  N   9.721  30.209  23.213  -7.618   2.077  -2.639  H25  YLD  55  
YLD  H26  H26  H  0  1  N  N  N   9.711  27.741  23.283  -5.721   2.386  -1.101  H26  YLD  56  
YLD  H27  H27  H  0  1  N  N  N  12.603  24.255  26.913  -1.191  -0.464  -0.671  H27  YLD  57  
YLD  H28  H28  H  0  1  N  N  N  10.718  19.765  26.600   2.602   0.166   1.509  H28  YLD  58  
YLD  H29  H29  H  0  1  N  N  N   4.709  22.028  24.378   5.455  -4.786  -1.535  H29  YLD  59  
YLD  H30  H30  H  0  1  N  N  N  10.326  17.575  29.776   4.551   1.151  -2.714  H30  YLD  60  
YLD  O1   O6   O  0  1  N  Y  N       ?       ?       ?   4.373   3.139   0.824  O1   YLD  61  
YLD  O2   O7   O  0  1  N  Y  N       ?       ?       ?   2.864   4.286  -0.766  O2   YLD  62  
YLD  O3   O8   O  0  1  N  Y  N       ?       ?       ?   2.072   2.814   0.848  O3   YLD  63  
YLD  H19  H19  H  0  1  N  Y  N       ?       ?       ?   1.895   3.497   1.510  H19  YLD  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YLD  O18  C14  DOUB  N  N   1  
YLD  C29  C30  DOUB  Y  N   2  
YLD  C29  C28  SING  Y  N   3  
YLD  C30  C24  SING  Y  N   4  
YLD  C28  C26  DOUB  Y  N   5  
YLD  C24  C23  SING  N  N   6  
YLD  C24  C25  DOUB  Y  N   7  
YLD  C23  O22  SING  N  N   8  
YLD  C14  N15  SING  N  N   9  
YLD  C14  C13  SING  N  N  10  
YLD  N15  C16  SING  N  N  11  
YLD  C26  C25  SING  Y  N  12  
YLD  C26  F27  SING  N  N  13  
YLD  O01  C02  DOUB  N  N  14  
YLD  O22  C02  SING  N  N  15  
YLD  C13  C17  SING  N  N  16  
YLD  C13  C12  SING  N  N  17  
YLD  C02  N03  SING  N  N  18  
YLD  C16  C17  SING  N  N  19  
YLD  C08  C06  SING  N  N  20  
YLD  N03  C04  SING  N  N  21  
YLD  C12  C11  SING  N  N  22  
YLD  C04  C09  SING  N  N  23  
YLD  C04  C05  SING  N  N  24  
YLD  N10  C09  SING  N  N  25  
YLD  N10  C11  SING  N  N  26  
YLD  C09  O21  DOUB  N  N  27  
YLD  C06  C05  SING  N  N  28  
YLD  C06  C07  SING  N  N  29  
YLD  C11  C19  SING  N  N  30  
YLD  C19  O20  SING  N  N  31  
YLD  C11  H1   SING  N  N  32  
YLD  C12  H2   SING  N  N  33  
YLD  C12  H3   SING  N  N  34  
YLD  C13  H4   SING  N  N  35  
YLD  C04  H5   SING  N  N  36  
YLD  C05  H6   SING  N  N  37  
YLD  C05  H7   SING  N  N  38  
YLD  C06  H8   SING  N  N  39  
YLD  C07  H9   SING  N  N  40  
YLD  C07  H10  SING  N  N  41  
YLD  C07  H11  SING  N  N  42  
YLD  C08  H12  SING  N  N  43  
YLD  C08  H13  SING  N  N  44  
YLD  C08  H14  SING  N  N  45  
YLD  C16  H15  SING  N  N  46  
YLD  C16  H16  SING  N  N  47  
YLD  C17  H17  SING  N  N  48  
YLD  C17  H18  SING  N  N  49  
YLD  C19  S1   SING  N  N  50  
YLD  C19  H20  SING  N  N  51  
YLD  C23  H21  SING  N  N  52  
YLD  C23  H22  SING  N  N  53  
YLD  C25  H23  SING  N  N  54  
YLD  C28  H24  SING  N  N  55  
YLD  C29  H25  SING  N  N  56  
YLD  C30  H26  SING  N  N  57  
YLD  N03  H27  SING  N  N  58  
YLD  N10  H28  SING  N  N  59  
YLD  N15  H29  SING  N  N  60  
YLD  O20  H30  SING  N  N  61  
YLD  S1   O1   DOUB  N  N  62  
YLD  S1   O2   DOUB  N  N  63  
YLD  S1   O3   SING  N  N  64  
YLD  O3   H19  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YLD  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OCc1cccc(F)c1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YLD  InChI             InChI                 1.03   "InChI=1S/C21H30FN3O8S/c1-12(2)8-16(25-21(29)33-11-13-4-3-5-15(22)9-13)19(27)24-17(20(28)34(30,31)32)10-14-6-7-23-18(14)26/h3-5,9,12,14,16-17,20,28H,6-8,10-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20+/m0/s1"  
YLD  InChIKey          InChI                 1.03   LNGFVEUFXDACOC-JWWIWJDOSA-N  
YLD  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OCc1cccc(F)c1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"  
YLD  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OCc1cccc(F)c1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"  
YLD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F"  
YLD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cccc(c2)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YLD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-2-[(N-{[(3-fluorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
YLD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-2-[(3-fluorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YLD  "Create component"  2021-03-12  RCSB  
YLD  "Initial release"   2021-03-24  RCSB  
##
