data_YM1
#

_chem_comp.id                                   YM1
_chem_comp.name                                 "(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-((((perfluorophenyl)methoxy)carbonyl)amino)pentanamido)-3-((R)-2-oxo-2,3-dihydro-1H-pyrrol-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H24 F5 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-12
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       573.488
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YM1
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M04
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YM1  C12  C1   C  0  1  N  N  N  -19.588  -5.979   3.584  -1.556   0.374   0.098  C12  YM1   1  
YM1  C13  C2   C  0  1  N  N  S  -21.096  -5.766   3.562  -0.427   0.608   1.069  C13  YM1   2  
YM1  C14  C3   C  0  1  N  N  N  -21.762  -7.115   3.924  -0.507   2.037   1.609  C14  YM1   3  
YM1  C15  C4   C  0  1  N  N  N  -23.321  -7.009   4.014  -1.834   2.229   2.347  C15  YM1   4  
YM1  C16  C5   C  0  1  N  N  N  -23.785  -5.864   4.988  -1.849   1.359   3.605  C16  YM1   5  
YM1  C17  C6   C  0  1  N  N  N  -23.942  -8.337   4.432  -1.990   3.699   2.741  C17  YM1   6  
YM1  C19  C7   C  0  1  N  N  N  -21.098  -4.062   1.730   1.962   0.132   1.097  C19  YM1   7  
YM1  C21  C8   C  0  1  N  N  N  -21.564  -2.409   0.127   4.307  -0.257   1.310  C21  YM1   8  
YM1  C01  C9   C  0  1  N  N  S  -17.160  -6.531   6.140  -4.394   1.467  -0.858  C01  YM1   9  
YM1  C03  C10  C  0  1  N  N  S  -17.416  -5.712   4.863  -3.924   0.086  -0.397  C03  YM1  10  
YM1  C04  C11  C  0  1  N  N  N  -16.635  -4.383   4.884  -5.082  -0.647   0.283  C04  YM1  11  
YM1  C05  C12  C  0  1  N  N  R  -16.861  -3.561   3.582  -4.625  -2.047   0.700  C05  YM1  12  
YM1  C06  C13  C  0  1  N  N  N  -16.227  -2.086   3.780  -5.714  -2.751   1.485  C06  YM1  13  
YM1  C08  C14  C  0  1  N  N  N  -15.086  -3.224   2.049  -5.282  -3.930  -0.392  C08  YM1  14  
YM1  C09  C15  C  0  1  N  N  N  -16.258  -4.152   2.525  -4.435  -2.929  -0.517  C09  YM1  15  
YM1  C22  C16  C  0  1  Y  N  N  -22.079  -2.212  -1.331   5.547  -0.302   0.453  C22  YM1  16  
YM1  C23  C17  C  0  1  Y  N  N  -23.147  -2.977  -1.779   6.291   0.847   0.253  C23  YM1  17  
YM1  C25  C18  C  0  1  Y  N  N  -23.620  -2.811  -3.081   7.431   0.806  -0.535  C25  YM1  18  
YM1  C27  C19  C  0  1  Y  N  N  -23.034  -1.874  -3.930   7.824  -0.386  -1.122  C27  YM1  19  
YM1  C29  C20  C  0  1  Y  N  N  -21.970  -1.102  -3.482   7.078  -1.536  -0.920  C29  YM1  20  
YM1  C31  C21  C  0  1  Y  N  N  -21.487  -1.265  -2.180   5.942  -1.495  -0.128  C31  YM1  21  
YM1  F24  F1   F  0  1  N  N  N  -23.739  -3.898  -0.967   5.907   2.009   0.825  F24  YM1  22  
YM1  F26  F2   F  0  1  N  N  N  -24.661  -3.569  -3.504   8.157   1.928  -0.732  F26  YM1  23  
YM1  F28  F3   F  0  1  N  N  N  -23.505  -1.718  -5.202   8.932  -0.426  -1.894  F28  YM1  24  
YM1  F30  F4   F  0  1  N  N  N  -21.395  -0.185  -4.314   7.461  -2.699  -1.492  F30  YM1  25  
YM1  F32  F5   F  0  1  N  N  N  -20.446  -0.498  -1.757   5.215  -2.616   0.070  F32  YM1  26  
YM1  N07  N1   N  0  1  N  N  N  -15.209  -1.905   2.892  -6.034  -3.844   0.765  N07  YM1  27  
YM1  N11  N2   N  0  1  N  N  N  -18.848  -5.509   4.784  -2.818   0.237   0.551  N11  YM1  28  
YM1  N18  N3   N  0  1  N  N  N  -21.553  -5.346   2.259   0.854   0.415   0.385  N18  YM1  29  
YM1  O02  O1   O  0  1  N  N  N  -15.776  -6.630   6.263  -3.282   2.201  -1.373  O02  YM1  30  
YM1  O10  O2   O  0  1  N  N  N  -16.582  -1.279   4.579  -6.196  -2.403   2.543  O10  YM1  31  
YM1  O20  O3   O  0  1  N  N  N  -21.214  -3.775   0.343   3.157   0.053   0.481  O20  YM1  32  
YM1  O33  O4   O  0  1  N  N  N  -20.645  -3.244   2.466   1.884  -0.054   2.295  O33  YM1  33  
YM1  O34  O5   O  0  1  N  N  N  -19.019  -6.511   2.679  -1.329   0.313  -1.092  O34  YM1  34  
YM1  H1   H1   H  0  1  N  N  N  -21.368  -5.019   4.322  -0.507  -0.098   1.895  H1   YM1  35  
YM1  H2   H2   H  0  1  N  N  N  -21.503  -7.855   3.152   0.319   2.212   2.297  H2   YM1  36  
YM1  H3   H3   H  0  1  N  N  N  -21.374  -7.450   4.898  -0.447   2.742   0.781  H3   YM1  37  
YM1  H4   H4   H  0  1  N  N  N  -23.695  -6.760   3.010  -2.658   1.939   1.695  H4   YM1  38  
YM1  H5   H5   H  0  1  N  N  N  -24.884  -5.830   5.017  -1.666   0.320   3.331  H5   YM1  39  
YM1  H6   H6   H  0  1  N  N  N  -23.398  -6.063   5.998  -1.070   1.697   4.290  H6   YM1  40  
YM1  H7   H7   H  0  1  N  N  N  -23.397  -4.899   4.630  -2.820   1.441   4.093  H7   YM1  41  
YM1  H8   H8   H  0  1  N  N  N  -25.035  -8.230   4.486  -1.979   4.319   1.845  H8   YM1  42  
YM1  H9   H9   H  0  1  N  N  N  -23.685  -9.110   3.693  -2.935   3.836   3.267  H9   YM1  43  
YM1  H10  H10  H  0  1  N  N  N  -23.553  -8.629   5.419  -1.166   3.990   3.394  H10  YM1  44  
YM1  H11  H11  H  0  1  N  N  N  -20.679  -1.777   0.289   4.161  -1.225   1.788  H11  YM1  45  
YM1  H12  H12  H  0  1  N  N  N  -22.355  -2.120   0.834   4.422   0.512   2.074  H12  YM1  46  
YM1  H13  H13  H  0  1  N  N  N  -17.555  -7.538   5.943  -4.825   2.004  -0.013  H13  YM1  47  
YM1  S1   S1   S  0  1  N  Y  N  -17.594  -6.060   6.997  -5.648   1.277  -2.155  S1   YM1  48  
YM1  H15  H15  H  0  1  N  N  N  -17.077  -6.301   3.998  -3.587  -0.489  -1.260  H15  YM1  49  
YM1  H16  H16  H  0  1  N  N  N  -15.562  -4.602   4.985  -5.396  -0.090   1.166  H16  YM1  50  
YM1  H17  H17  H  0  1  N  N  N  -16.970  -3.786   5.745  -5.918  -0.729  -0.411  H17  YM1  51  
YM1  H18  H18  H  0  1  N  N  N  -17.943  -3.447   3.420  -3.706  -1.991   1.283  H18  YM1  52  
YM1  H19  H19  H  0  1  N  N  N  -14.345  -3.447   1.295  -5.378  -4.728  -1.113  H19  YM1  53  
YM1  H20  H20  H  0  1  N  N  N  -16.535  -5.099   2.085  -3.741  -2.769  -1.328  H20  YM1  54  
YM1  H21  H21  H  0  1  N  N  N  -14.645  -1.085   2.795  -6.708  -4.490   1.026  H21  YM1  55  
YM1  H22  H22  H  0  1  N  N  N  -19.335  -5.056   5.531  -2.993   0.240   1.505  H22  YM1  56  
YM1  H23  H23  H  0  1  N  N  N  -22.171  -5.924   1.727   0.904   0.493  -0.581  H23  YM1  57  
YM1  H24  H24  H  0  1  N  N  N  -15.562  -7.130   7.042  -2.572   2.341  -0.732  H24  YM1  58  
YM1  O1   O6   O  0  1  N  Y  N        ?       ?       ?  -6.125   2.548  -2.577  O1   YM1  59  
YM1  O2   O7   O  0  1  N  Y  N        ?       ?       ?  -5.243   0.296  -3.100  O2   YM1  60  
YM1  O3   O8   O  0  1  N  Y  N        ?       ?       ?  -6.837   0.647  -1.445  O3   YM1  61  
YM1  H14  H14  H  0  1  N  Y  N        ?       ?       ?  -7.597   0.483  -2.020  H14  YM1  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YM1  F28  C27  SING  N  N   1  
YM1  F30  C29  SING  N  N   2  
YM1  C27  C29  DOUB  Y  N   3  
YM1  C27  C25  SING  Y  N   4  
YM1  F26  C25  SING  N  N   5  
YM1  C29  C31  SING  Y  N   6  
YM1  C25  C23  DOUB  Y  N   7  
YM1  C31  F32  SING  N  N   8  
YM1  C31  C22  DOUB  Y  N   9  
YM1  C23  C22  SING  Y  N  10  
YM1  C23  F24  SING  N  N  11  
YM1  C22  C21  SING  N  N  12  
YM1  C21  O20  SING  N  N  13  
YM1  O20  C19  SING  N  N  14  
YM1  C19  N18  SING  N  N  15  
YM1  C19  O33  DOUB  N  N  16  
YM1  C08  C09  DOUB  N  N  17  
YM1  C08  N07  SING  N  N  18  
YM1  N18  C13  SING  N  N  19  
YM1  C09  C05  SING  N  N  20  
YM1  O34  C12  DOUB  N  N  21  
YM1  N07  C06  SING  N  N  22  
YM1  C13  C12  SING  N  N  23  
YM1  C13  C14  SING  N  N  24  
YM1  C05  C06  SING  N  N  25  
YM1  C05  C04  SING  N  N  26  
YM1  C12  N11  SING  N  N  27  
YM1  C06  O10  DOUB  N  N  28  
YM1  C14  C15  SING  N  N  29  
YM1  C15  C17  SING  N  N  30  
YM1  C15  C16  SING  N  N  31  
YM1  N11  C03  SING  N  N  32  
YM1  C03  C04  SING  N  N  33  
YM1  C03  C01  SING  N  N  34  
YM1  C01  O02  SING  N  N  35  
YM1  C13  H1   SING  N  N  36  
YM1  C14  H2   SING  N  N  37  
YM1  C14  H3   SING  N  N  38  
YM1  C15  H4   SING  N  N  39  
YM1  C16  H5   SING  N  N  40  
YM1  C16  H6   SING  N  N  41  
YM1  C16  H7   SING  N  N  42  
YM1  C17  H8   SING  N  N  43  
YM1  C17  H9   SING  N  N  44  
YM1  C17  H10  SING  N  N  45  
YM1  C21  H11  SING  N  N  46  
YM1  C21  H12  SING  N  N  47  
YM1  C01  H13  SING  N  N  48  
YM1  C01  S1   SING  N  N  49  
YM1  C03  H15  SING  N  N  50  
YM1  C04  H16  SING  N  N  51  
YM1  C04  H17  SING  N  N  52  
YM1  C05  H18  SING  N  N  53  
YM1  C08  H19  SING  N  N  54  
YM1  C09  H20  SING  N  N  55  
YM1  N07  H21  SING  N  N  56  
YM1  N11  H22  SING  N  N  57  
YM1  N18  H23  SING  N  N  58  
YM1  O02  H24  SING  N  N  59  
YM1  S1   O1   DOUB  N  N  60  
YM1  S1   O2   DOUB  N  N  61  
YM1  S1   O3   SING  N  N  62  
YM1  O3   H14  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YM1  SMILES            ACDLabs               12.01  "O=C1NC=CC1CC(NC(=O)C(CC(C)C)NC(=O)OCc1c(F)c(F)c(F)c(F)c1F)C(O)S(=O)(=O)O"  
YM1  InChI             InChI                 1.03   "InChI=1S/C21H24F5N3O8S/c1-8(2)5-11(29-21(33)37-7-10-13(22)15(24)17(26)16(25)14(10)23)19(31)28-12(20(32)38(34,35)36)6-9-3-4-27-18(9)30/h3-4,8-9,11-12,20,32H,5-7H2,1-2H3,(H,27,30)(H,28,31)(H,29,33)(H,34,35,36)/t9-,11-,12-,20-/m0/s1"  
YM1  InChIKey          InChI                 1.03   VNVWDEQECYLCMA-JJDHJZHUSA-N  
YM1  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OCc1c(F)c(F)c(F)c(F)c1F)C(=O)N[C@@H](C[C@@H]2C=CNC2=O)[C@@H](O)[S](O)(=O)=O"  
YM1  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OCc1c(F)c(F)c(F)c(F)c1F)C(=O)N[CH](C[CH]2C=CNC2=O)[CH](O)[S](O)(=O)=O"  
YM1  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1C=CNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2c(c(c(c(c2F)F)F)F)F"  
YM1  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1C=CNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2c(c(c(c(c2F)F)F)F)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YM1  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S)-1-hydroxy-3-[(3R)-2-oxo-2,3-dihydro-1H-pyrrol-3-yl]-2-[(N-{[(pentafluorophenyl)methoxy]carbonyl}-L-leucyl)amino]propane-1-sulfonic acid"  
YM1  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-4-methyl-2-[[2,3,4,5,6-pentakis(fluoranyl)phenyl]methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-1,3-dihydropyrrol-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YM1  "Create component"  2021-03-12  RCSB  
YM1  "Initial release"   2021-03-24  RCSB  
##
