data_YMD
#

_chem_comp.id                                   YMD
_chem_comp.name                                 "(1R,2S)-2-((S)-2-((((4,4-dimethylcyclohexyl)oxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H39 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-12
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       505.625
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YMD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LZX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YMD  C02  C1   C  0  1  N  N  N  11.287  24.038  25.682   2.427  -0.130   0.014  C02  YMD   1  
YMD  C04  C2   C  0  1  N  N  S  12.281  22.070  26.913   0.072   0.081   0.600  C04  YMD   2  
YMD  C05  C3   C  0  1  N  N  N  13.388  21.813  27.926  -0.032   1.434   1.306  C05  YMD   3  
YMD  C06  C4   C  0  1  N  N  N  14.739  22.280  27.404   1.236   1.681   2.126  C06  YMD   4  
YMD  C07  C5   C  0  1  N  N  N  15.124  21.515  26.145   1.187   3.085   2.731  C07  YMD   5  
YMD  C08  C6   C  0  1  N  N  N  15.815  22.159  28.478   1.327   0.644   3.248  C08  YMD   6  
YMD  C09  C7   C  0  1  N  N  N  10.963  21.576  27.482  -1.225  -0.217  -0.108  C09  YMD   7  
YMD  C11  C8   C  0  1  N  N  S   9.119  19.881  27.404  -3.647  -0.484  -0.103  C11  YMD   8  
YMD  C12  C9   C  0  1  N  N  N   8.018  19.892  26.309  -3.852   0.663  -1.096  C12  YMD   9  
YMD  C13  C10  C  0  1  N  N  S   7.750  21.185  25.694  -3.955   1.985  -0.333  C13  YMD  10  
YMD  C14  C11  C  0  1  N  N  N   6.699  21.026  24.503  -4.149   3.137  -1.294  C14  YMD  11  
YMD  C16  C12  C  0  1  N  N  N   6.034  22.712  26.034  -5.667   3.482   0.429  C16  YMD  12  
YMD  C17  C13  C  0  1  N  N  N   7.049  22.065  26.699  -5.228   2.005   0.544  C17  YMD  13  
YMD  C19  C14  C  0  1  N  N  R   9.303  18.502  28.036  -3.632  -1.815  -0.858  C19  YMD  14  
YMD  C23  C15  C  0  1  N  N  N  10.288  25.925  24.700   4.766  -0.380  -0.392  C23  YMD  15  
YMD  C24  C16  C  0  1  N  N  N   8.883  26.063  25.279   5.594  -1.023  -1.506  C24  YMD  16  
YMD  C25  C17  C  0  1  N  N  N   7.947  26.802  24.330   7.003  -1.320  -0.988  C25  YMD  17  
YMD  C26  C18  C  0  1  N  N  N   8.507  28.155  23.900   7.669  -0.016  -0.544  C26  YMD  18  
YMD  C27  C19  C  0  1  N  N  N   7.596  28.724  22.822   9.077  -0.313  -0.026  C27  YMD  19  
YMD  C28  C20  C  0  1  N  N  N   8.495  29.123  25.083   7.755   0.943  -1.734  C28  YMD  20  
YMD  C29  C21  C  0  1  N  N  N   9.920  28.042  23.340   6.840   0.627   0.570  C29  YMD  21  
YMD  C30  C22  C  0  1  N  N  N  10.856  27.275  24.268   5.432   0.925   0.051  C30  YMD  22  
YMD  N03  N1   N  0  1  N  N  N  12.194  23.488  26.657   1.163   0.123  -0.377  N03  YMD  23  
YMD  N10  N2   N  0  1  N  N  N  10.376  20.398  26.897  -2.372  -0.304   0.595  N10  YMD  24  
YMD  N15  N3   N  0  1  N  N  N   5.714  21.911  24.713  -5.115   3.956  -0.846  N15  YMD  25  
YMD  O01  O1   O  0  1  N  N  N  10.698  23.350  24.925   2.663  -0.392   1.177  O01  YMD  26  
YMD  O18  O2   O  0  1  N  N  N   6.771  20.287  23.601  -3.522   3.298  -2.320  O18  YMD  27  
YMD  O20  O3   O  0  1  N  N  N  10.126  18.679  29.160  -4.868  -1.982  -1.555  O20  YMD  28  
YMD  O21  O4   O  0  1  N  N  N  10.422  22.151  28.361  -1.237  -0.379  -1.310  O21  YMD  29  
YMD  O22  O5   O  0  1  N  N  N  11.136  25.421  25.674   3.429  -0.097  -0.885  O22  YMD  30  
YMD  H1   H1   H  0  1  N  N  N  12.504  21.525  25.984   0.272  -0.698   1.335  H1   YMD  31  
YMD  H2   H2   H  0  1  N  N  N  13.156  22.355  28.854  -0.144   2.224   0.563  H2   YMD  32  
YMD  H3   H3   H  0  1  N  N  N  13.439  20.734  28.135  -0.899   1.433   1.968  H3   YMD  33  
YMD  H4   H4   H  0  1  N  N  N  14.648  23.343  27.137   2.109   1.594   1.479  H4   YMD  34  
YMD  H5   H5   H  0  1  N  N  N  16.102  21.868  25.786   0.314   3.172   3.378  H5   YMD  35  
YMD  H6   H6   H  0  1  N  N  N  15.183  20.440  26.373   2.091   3.260   3.315  H6   YMD  36  
YMD  H7   H7   H  0  1  N  N  N  14.365  21.684  25.367   1.122   3.823   1.932  H7   YMD  37  
YMD  H8   H8   H  0  1  N  N  N  15.507  22.721  29.372   2.230   0.820   3.832  H8   YMD  38  
YMD  H9   H9   H  0  1  N  N  N  15.953  21.100  28.741   0.454   0.731   3.894  H9   YMD  39  
YMD  H10  H10  H  0  1  N  N  N  16.762  22.568  28.096   1.361  -0.356   2.817  H10  YMD  40  
YMD  H11  H11  H  0  1  N  N  N   8.775  20.555  28.202  -4.461  -0.486   0.622  H11  YMD  41  
YMD  H12  H12  H  0  1  N  N  N   7.083  19.535  26.766  -3.006   0.704  -1.782  H12  YMD  42  
YMD  H13  H13  H  0  1  N  N  N   8.326  19.197  25.514  -4.769   0.495  -1.660  H13  YMD  43  
YMD  H14  H14  H  0  1  N  N  N   8.669  21.662  25.322  -3.067   2.141   0.279  H14  YMD  44  
YMD  H15  H15  H  0  1  N  N  N   6.349  23.735  25.781  -6.754   3.553   0.420  H15  YMD  45  
YMD  H16  H16  H  0  1  N  N  N   5.138  22.751  26.671  -5.258   4.062   1.257  H16  YMD  46  
YMD  H17  H17  H  0  1  N  N  N   6.635  21.452  27.513  -5.991   1.340   0.140  H17  YMD  47  
YMD  H18  H18  H  0  1  N  N  N   7.755  22.799  27.115  -4.995   1.747   1.577  H18  YMD  48  
YMD  S1   S1   S  0  1  N  Y  N   9.751  17.823  27.341  -3.414  -3.176   0.322  S1   YMD  49  
YMD  H20  H20  H  0  1  N  N  N   8.310  18.186  28.389  -2.809  -1.818  -1.572  H20  YMD  50  
YMD  H21  H21  H  0  1  N  N  N  10.251  25.257  23.827   4.704  -1.062   0.455  H21  YMD  51  
YMD  H22  H22  H  0  1  N  N  N   8.942  26.620  26.226   5.120  -1.952  -1.822  H22  YMD  52  
YMD  H23  H23  H  0  1  N  N  N   8.476  25.059  25.469   5.656  -0.340  -2.354  H23  YMD  53  
YMD  H24  H24  H  0  1  N  N  N   6.984  26.963  24.837   6.941  -2.003  -0.140  H24  YMD  54  
YMD  H25  H25  H  0  1  N  N  N   7.791  26.183  23.434   7.593  -1.778  -1.781  H25  YMD  55  
YMD  H26  H26  H  0  1  N  N  N   6.572  28.810  23.215   9.667  -0.771  -0.819  H26  YMD  56  
YMD  H27  H27  H  0  1  N  N  N   7.959  29.718  22.523   9.552   0.616   0.290  H27  YMD  57  
YMD  H28  H28  H  0  1  N  N  N   7.599  28.055  21.949   9.016  -0.996   0.822  H28  YMD  58  
YMD  H29  H29  H  0  1  N  N  N   9.147  28.737  25.880   6.752   1.155  -2.103  H29  YMD  59  
YMD  H30  H30  H  0  1  N  N  N   8.861  30.107  24.755   8.230   1.872  -1.418  H30  YMD  60  
YMD  H31  H31  H  0  1  N  N  N   7.468  29.222  25.465   8.345   0.485  -2.527  H31  YMD  61  
YMD  H32  H32  H  0  1  N  N  N   9.876  27.519  22.373   6.779  -0.055   1.417  H32  YMD  62  
YMD  H33  H33  H  0  1  N  N  N  10.323  29.055  23.191   7.315   1.556   0.885  H33  YMD  63  
YMD  H34  H34  H  0  1  N  N  N  11.808  27.104  23.744   5.493   1.607  -0.797  H34  YMD  64  
YMD  H35  H35  H  0  1  N  N  N  11.036  27.884  25.166   4.842   1.383   0.844  H35  YMD  65  
YMD  H36  H36  H  0  1  N  N  N  12.783  24.109  27.174   0.975   0.332  -1.305  H36  YMD  66  
YMD  H37  H37  H  0  1  N  N  N  10.836  19.935  26.139  -2.353  -0.247   1.563  H37  YMD  67  
YMD  H38  H38  H  0  1  N  N  N   4.912  22.041  24.130  -5.411   4.757  -1.306  H38  YMD  68  
YMD  H39  H39  H  0  1  N  N  N  10.267  17.841  29.585  -5.051  -1.288  -2.204  H39  YMD  69  
YMD  O1   O6   O  0  1  N  Y  N       ?       ?       ?  -4.342  -3.062   1.392  O1   YMD  70  
YMD  O2   O7   O  0  1  N  Y  N       ?       ?       ?  -3.236  -4.407  -0.365  O2   YMD  71  
YMD  O3   O8   O  0  1  N  Y  N       ?       ?       ?  -2.062  -2.907   0.967  O3   YMD  72  
YMD  H19  H19  H  0  1  N  Y  N       ?       ?       ?  -1.806  -3.562   1.630  H19  YMD  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YMD  C27  C26  SING  N  N   1  
YMD  C29  C26  SING  N  N   2  
YMD  C29  C30  SING  N  N   3  
YMD  O18  C14  DOUB  N  N   4  
YMD  C26  C25  SING  N  N   5  
YMD  C26  C28  SING  N  N   6  
YMD  C30  C23  SING  N  N   7  
YMD  C25  C24  SING  N  N   8  
YMD  C14  N15  SING  N  N   9  
YMD  C14  C13  SING  N  N  10  
YMD  C23  C24  SING  N  N  11  
YMD  C23  O22  SING  N  N  12  
YMD  N15  C16  SING  N  N  13  
YMD  O01  C02  DOUB  N  N  14  
YMD  O22  C02  SING  N  N  15  
YMD  C02  N03  SING  N  N  16  
YMD  C13  C12  SING  N  N  17  
YMD  C13  C17  SING  N  N  18  
YMD  C16  C17  SING  N  N  19  
YMD  C07  C06  SING  N  N  20  
YMD  C12  C11  SING  N  N  21  
YMD  N03  C04  SING  N  N  22  
YMD  N10  C11  SING  N  N  23  
YMD  N10  C09  SING  N  N  24  
YMD  C04  C09  SING  N  N  25  
YMD  C04  C05  SING  N  N  26  
YMD  C11  C19  SING  N  N  27  
YMD  C06  C05  SING  N  N  28  
YMD  C06  C08  SING  N  N  29  
YMD  C09  O21  DOUB  N  N  30  
YMD  C19  O20  SING  N  N  31  
YMD  C04  H1   SING  N  N  32  
YMD  C05  H2   SING  N  N  33  
YMD  C05  H3   SING  N  N  34  
YMD  C06  H4   SING  N  N  35  
YMD  C07  H5   SING  N  N  36  
YMD  C07  H6   SING  N  N  37  
YMD  C07  H7   SING  N  N  38  
YMD  C08  H8   SING  N  N  39  
YMD  C08  H9   SING  N  N  40  
YMD  C08  H10  SING  N  N  41  
YMD  C11  H11  SING  N  N  42  
YMD  C12  H12  SING  N  N  43  
YMD  C12  H13  SING  N  N  44  
YMD  C13  H14  SING  N  N  45  
YMD  C16  H15  SING  N  N  46  
YMD  C16  H16  SING  N  N  47  
YMD  C17  H17  SING  N  N  48  
YMD  C17  H18  SING  N  N  49  
YMD  C19  S1   SING  N  N  50  
YMD  C19  H20  SING  N  N  51  
YMD  C23  H21  SING  N  N  52  
YMD  C24  H22  SING  N  N  53  
YMD  C24  H23  SING  N  N  54  
YMD  C25  H24  SING  N  N  55  
YMD  C25  H25  SING  N  N  56  
YMD  C27  H26  SING  N  N  57  
YMD  C27  H27  SING  N  N  58  
YMD  C27  H28  SING  N  N  59  
YMD  C28  H29  SING  N  N  60  
YMD  C28  H30  SING  N  N  61  
YMD  C28  H31  SING  N  N  62  
YMD  C29  H32  SING  N  N  63  
YMD  C29  H33  SING  N  N  64  
YMD  C30  H34  SING  N  N  65  
YMD  C30  H35  SING  N  N  66  
YMD  N03  H36  SING  N  N  67  
YMD  N10  H37  SING  N  N  68  
YMD  N15  H38  SING  N  N  69  
YMD  O20  H39  SING  N  N  70  
YMD  S1   O1   DOUB  N  N  71  
YMD  S1   O2   DOUB  N  N  72  
YMD  S1   O3   SING  N  N  73  
YMD  O3   H19  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YMD  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OC1CCC(C)(C)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YMD  InChI             InChI                 1.03   "InChI=1S/C22H39N3O8S/c1-13(2)11-16(25-21(29)33-15-5-8-22(3,4)9-6-15)19(27)24-17(20(28)34(30,31)32)12-14-7-10-23-18(14)26/h13-17,20,28H,5-12H2,1-4H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t14-,16-,17-,20+/m0/s1"  
YMD  InChIKey          InChI                 1.03   LGCFVMZACNBZBJ-JWWIWJDOSA-N  
YMD  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC1CCC(C)(C)CC1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"  
YMD  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC1CCC(C)(C)CC1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"  
YMD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)(C)C"  
YMD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)(C)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YMD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-2-[(N-{[(4,4-dimethylcyclohexyl)oxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
YMD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-2-[(4,4-dimethylcyclohexyl)oxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YMD  "Create component"  2021-03-12  RCSB  
YMD  "Initial release"   2021-03-24  RCSB  
##
