data_YMJ
#

_chem_comp.id                                   YMJ
_chem_comp.name                                 "(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H41 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-12
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       519.652
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YMJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LZY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YMJ  C21  C1   C  0  1  N  N  N   9.523  16.575  23.297  10.981  -0.610  -0.585  C21  YMJ   1  
YMJ  C14  C2   C  0  1  N  N  R   7.976   2.280  19.564  -3.978  -1.923  -0.830  C14  YMJ   2  
YMJ  C13  C3   C  0  1  N  N  N   6.147   6.252  20.261  -5.698   1.961   0.381  C13  YMJ   3  
YMJ  C12  C4   C  0  1  N  N  N   5.520   7.594  19.929  -6.087   3.445   0.204  C12  YMJ   4  
YMJ  C16  C5   C  0  1  N  N  N  11.272  10.815  23.272   4.978   1.203   0.089  C16  YMJ   5  
YMJ  C15  C6   C  0  1  N  N  N  10.336   9.887  22.536   4.369  -0.127  -0.360  C15  YMJ   6  
YMJ  C11  C7   C  0  1  N  N  N   6.817   6.993  18.094  -4.474   3.016  -1.412  C11  YMJ   7  
YMJ  C18  C8   C  0  1  N  N  N   9.594  12.693  23.078   7.256   0.357  -0.495  C18  YMJ   8  
YMJ  C19  C9   C  0  1  N  N  N   9.357  14.144  22.671   8.672   0.118   0.031  C19  YMJ   9  
YMJ  C1   C10  C  0  1  N  N  N  10.484   7.528  22.150   2.020   0.024   0.034  C1   YMJ  10  
YMJ  C10  C11  C  0  1  N  N  S   7.254   6.086  19.227  -4.374   1.884  -0.414  C10  YMJ  11  
YMJ  C17  C12  C  0  1  N  N  N  11.040  12.267  22.854   6.395   0.964   0.615  C17  YMJ  12  
YMJ  C2   C13  C  0  1  N  N  S  10.780   5.117  22.106  -0.345   0.143   0.607  C2   YMJ  13  
YMJ  C20  C14  C  0  1  N  N  N  10.072  15.185  23.515   9.565  -0.371  -1.111  C20  YMJ  14  
YMJ  C22  C15  C  0  1  N  N  N   8.654  11.736  22.354   6.647  -0.973  -0.944  C22  YMJ  15  
YMJ  C23  C16  C  0  1  N  N  N   8.893  10.281  22.757   5.230  -0.733  -1.470  C23  YMJ  16  
YMJ  C3   C17  C  0  1  N  N  N  11.443   4.077  23.002  -0.506   1.493   1.309  C3   YMJ  17  
YMJ  C4   C18  C  0  1  N  N  N  12.951   4.262  23.165   0.747   1.792   2.134  C4   YMJ  18  
YMJ  C5   C19  C  0  1  N  N  N  13.685   3.848  21.898   0.639   3.195   2.735  C5   YMJ  19  
YMJ  C6   C20  C  0  1  N  N  N  13.472   3.480  24.356   0.874   0.763   3.260  C6   YMJ  20  
YMJ  C7   C21  C  0  1  N  N  N   9.368   4.700  21.712  -1.625  -0.209  -0.106  C7   YMJ  21  
YMJ  C8   C22  C  0  1  N  N  S   7.927   3.745  19.957  -4.035  -0.572  -0.112  C8   YMJ  22  
YMJ  C9   C23  C  0  1  N  N  N   7.539   4.649  18.790  -4.260   0.541  -1.137  C9   YMJ  23  
YMJ  N1   N1   N  0  1  N  N  N  10.793   6.400  22.777   0.748   0.225  -0.364  N1   YMJ  24  
YMJ  N2   N2   N  0  1  N  N  N   9.222   4.161  20.499  -2.771  -0.340   0.592  N2   YMJ  25  
YMJ  N3   N3   N  0  1  N  N  N   5.772   7.706  18.497  -5.445   3.872  -1.045  N3   YMJ  26  
YMJ  O1   O1   O  0  1  N  N  N  10.239   7.653  20.965   2.260  -0.225   1.199  O1   YMJ  27  
YMJ  O2   O2   O  0  1  N  N  N   7.365   7.074  16.987  -3.781   3.135  -2.400  O2   YMJ  28  
YMJ  O3   O3   O  0  1  N  N  N   8.365   1.464  20.647  -5.235  -2.181  -1.458  O3   YMJ  29  
YMJ  O4   O4   O  0  1  N  N  N   8.429   4.882  22.481  -1.624  -0.375  -1.307  O4   YMJ  30  
YMJ  O5   O5   O  0  1  N  N  N  10.513   8.532  23.051   3.025   0.100  -0.859  O5   YMJ  31  
YMJ  H1   H1   H  0  1  N  N  N  10.072  17.290  23.928  11.382   0.320  -0.184  H1   YMJ  32  
YMJ  H2   H2   H  0  1  N  N  N   9.641  16.854  22.240  10.954  -1.364   0.203  H2   YMJ  33  
YMJ  H3   H3   H  0  1  N  N  N   8.456  16.594  23.564  11.617  -0.959  -1.399  H3   YMJ  34  
YMJ  S1   S1   S  0  1  N  Y  N   8.652   2.145  18.746  -3.623  -3.233   0.374  S1   YMJ  35  
YMJ  H5   H5   H  0  1  N  N  N   6.942   2.004  19.309  -3.192  -1.900  -1.584  H5   YMJ  36  
YMJ  H6   H6   H  0  1  N  N  N   5.406   5.443  20.172  -5.536   1.723   1.432  H6   YMJ  37  
YMJ  H7   H7   H  0  1  N  N  N   6.563   6.258  21.279  -6.452   1.305  -0.054  H7   YMJ  38  
YMJ  H8   H8   H  0  1  N  N  N   6.006   8.410  20.484  -7.170   3.544   0.124  H8   YMJ  39  
YMJ  H9   H9   H  0  1  N  N  N   4.441   7.595  20.145  -5.716   4.035   1.042  H9   YMJ  40  
YMJ  H10  H10  H  0  1  N  N  N  11.097  10.719  24.354   5.016   1.889  -0.757  H10  YMJ  41  
YMJ  H11  H11  H  0  1  N  N  N  12.311  10.536  23.042   4.365   1.635   0.880  H11  YMJ  42  
YMJ  H12  H12  H  0  1  N  N  N  10.562   9.916  21.460   4.332  -0.813   0.486  H12  YMJ  43  
YMJ  H13  H13  H  0  1  N  N  N   9.386  12.612  24.155   7.294   1.043  -1.341  H13  YMJ  44  
YMJ  H14  H14  H  0  1  N  N  N   9.692  14.263  21.630   9.073   1.049   0.433  H14  YMJ  45  
YMJ  H15  H15  H  0  1  N  N  N   8.277  14.341  22.733   8.645  -0.635   0.819  H15  YMJ  46  
YMJ  H16  H16  H  0  1  N  N  N   8.180   6.498  19.654  -3.522   2.035   0.249  H16  YMJ  47  
YMJ  H17  H17  H  0  1  N  N  N  11.282  12.374  21.786   6.829   1.911   0.935  H17  YMJ  48  
YMJ  H18  H18  H  0  1  N  N  N  11.700  12.918  23.446   6.357   0.277   1.461  H18  YMJ  49  
YMJ  H19  H19  H  0  1  N  N  N  11.376   5.195  21.185  -0.117  -0.626   1.346  H19  YMJ  50  
YMJ  H20  H20  H  0  1  N  N  N   9.955  14.921  24.576   9.592   0.382  -1.899  H20  YMJ  51  
YMJ  H21  H21  H  0  1  N  N  N  11.140  15.181  23.252   9.164  -1.302  -1.513  H21  YMJ  52  
YMJ  H22  H22  H  0  1  N  N  N   8.813  11.835  21.270   7.260  -1.405  -1.735  H22  YMJ  53  
YMJ  H23  H23  H  0  1  N  N  N   7.616  12.006  22.598   6.609  -1.659  -0.098  H23  YMJ  54  
YMJ  H24  H24  H  0  1  N  N  N   8.645  10.157  23.822   4.796  -1.681  -1.790  H24  YMJ  55  
YMJ  H25  H25  H  0  1  N  N  N   8.246   9.629  22.152   5.268  -0.047  -2.316  H25  YMJ  56  
YMJ  H26  H26  H  0  1  N  N  N  10.979   4.133  23.998  -0.646   2.275   0.563  H26  YMJ  57  
YMJ  H27  H27  H  0  1  N  N  N  11.262   3.082  22.569  -1.375   1.459   1.967  H27  YMJ  58  
YMJ  H28  H28  H  0  1  N  N  N  13.147   5.330  23.342   1.626   1.738   1.492  H28  YMJ  59  
YMJ  H29  H29  H  0  1  N  N  N  14.767   3.989  22.038  -0.240   3.248   3.377  H29  YMJ  60  
YMJ  H30  H30  H  0  1  N  N  N  13.478   2.789  21.684   1.532   3.408   3.323  H30  YMJ  61  
YMJ  H31  H31  H  0  1  N  N  N  13.340   4.466  21.056   0.549   3.927   1.933  H31  YMJ  62  
YMJ  H32  H32  H  0  1  N  N  N  12.933   3.790  25.263   0.951  -0.236   2.832  H32  YMJ  63  
YMJ  H33  H33  H  0  1  N  N  N  13.315   2.405  24.186   1.767   0.976   3.848  H33  YMJ  64  
YMJ  H34  H34  H  0  1  N  N  N  14.547   3.678  24.483  -0.005   0.817   3.902  H34  YMJ  65  
YMJ  H35  H35  H  0  1  N  N  N   7.164   3.860  20.741  -4.855  -0.577   0.606  H35  YMJ  66  
YMJ  H36  H36  H  0  1  N  N  N   6.636   4.240  18.313  -5.179   0.346  -1.689  H36  YMJ  67  
YMJ  H37  H37  H  0  1  N  N  N   8.365   4.659  18.063  -3.419   0.572  -1.830  H37  YMJ  68  
YMJ  H38  H38  H  0  1  N  N  N  11.043   6.437  23.745   0.557   0.424  -1.294  H38  YMJ  69  
YMJ  H39  H39  H  0  1  N  N  N  10.037   4.035  19.933  -2.759  -0.280   1.560  H39  YMJ  70  
YMJ  H40  H40  H  0  1  N  N  N   5.215   8.263  17.881  -5.689   4.669  -1.541  H40  YMJ  71  
YMJ  H41  H41  H  0  1  N  N  N   8.386   0.556  20.368  -5.489  -1.519  -2.115  H41  YMJ  72  
YMJ  O7   O7   O  0  1  N  Y  N       ?       ?       ?  -4.491  -3.129   1.494  O7   YMJ  73  
YMJ  O6   O6   O  0  1  N  Y  N       ?       ?       ?  -3.423  -4.475  -0.286  O6   YMJ  74  
YMJ  O8   O8   O  0  1  N  Y  N       ?       ?       ?  -2.251  -2.877   0.928  O8   YMJ  75  
YMJ  H4   H4   H  0  1  N  Y  N       ?       ?       ?  -1.923  -3.498   1.594  H4   YMJ  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YMJ  O2   C11  DOUB  N  N   1  
YMJ  C11  N3   SING  N  N   2  
YMJ  C11  C10  SING  N  N   3  
YMJ  N3   C12  SING  N  N   4  
YMJ  C9   C10  SING  N  N   5  
YMJ  C9   C8   SING  N  N   6  
YMJ  C10  C13  SING  N  N   7  
YMJ  C14  C8   SING  N  N   8  
YMJ  C14  O3   SING  N  N   9  
YMJ  C12  C13  SING  N  N  10  
YMJ  C8   N2   SING  N  N  11  
YMJ  N2   C7   SING  N  N  12  
YMJ  O1   C1   DOUB  N  N  13  
YMJ  C7   C2   SING  N  N  14  
YMJ  C7   O4   DOUB  N  N  15  
YMJ  C5   C4   SING  N  N  16  
YMJ  C2   N1   SING  N  N  17  
YMJ  C2   C3   SING  N  N  18  
YMJ  C1   N1   SING  N  N  19  
YMJ  C1   O5   SING  N  N  20  
YMJ  C22  C23  SING  N  N  21  
YMJ  C22  C18  SING  N  N  22  
YMJ  C15  C23  SING  N  N  23  
YMJ  C15  O5   SING  N  N  24  
YMJ  C15  C16  SING  N  N  25  
YMJ  C19  C18  SING  N  N  26  
YMJ  C19  C20  SING  N  N  27  
YMJ  C17  C18  SING  N  N  28  
YMJ  C17  C16  SING  N  N  29  
YMJ  C3   C4   SING  N  N  30  
YMJ  C4   C6   SING  N  N  31  
YMJ  C21  C20  SING  N  N  32  
YMJ  C21  H1   SING  N  N  33  
YMJ  C21  H2   SING  N  N  34  
YMJ  C21  H3   SING  N  N  35  
YMJ  C14  S1   SING  N  N  36  
YMJ  C14  H5   SING  N  N  37  
YMJ  C13  H6   SING  N  N  38  
YMJ  C13  H7   SING  N  N  39  
YMJ  C12  H8   SING  N  N  40  
YMJ  C12  H9   SING  N  N  41  
YMJ  C16  H10  SING  N  N  42  
YMJ  C16  H11  SING  N  N  43  
YMJ  C15  H12  SING  N  N  44  
YMJ  C18  H13  SING  N  N  45  
YMJ  C19  H14  SING  N  N  46  
YMJ  C19  H15  SING  N  N  47  
YMJ  C10  H16  SING  N  N  48  
YMJ  C17  H17  SING  N  N  49  
YMJ  C17  H18  SING  N  N  50  
YMJ  C2   H19  SING  N  N  51  
YMJ  C20  H20  SING  N  N  52  
YMJ  C20  H21  SING  N  N  53  
YMJ  C22  H22  SING  N  N  54  
YMJ  C22  H23  SING  N  N  55  
YMJ  C23  H24  SING  N  N  56  
YMJ  C23  H25  SING  N  N  57  
YMJ  C3   H26  SING  N  N  58  
YMJ  C3   H27  SING  N  N  59  
YMJ  C4   H28  SING  N  N  60  
YMJ  C5   H29  SING  N  N  61  
YMJ  C5   H30  SING  N  N  62  
YMJ  C5   H31  SING  N  N  63  
YMJ  C6   H32  SING  N  N  64  
YMJ  C6   H33  SING  N  N  65  
YMJ  C6   H34  SING  N  N  66  
YMJ  C8   H35  SING  N  N  67  
YMJ  C9   H36  SING  N  N  68  
YMJ  C9   H37  SING  N  N  69  
YMJ  N1   H38  SING  N  N  70  
YMJ  N2   H39  SING  N  N  71  
YMJ  N3   H40  SING  N  N  72  
YMJ  O3   H41  SING  N  N  73  
YMJ  S1   O7   DOUB  N  N  74  
YMJ  S1   O6   DOUB  N  N  75  
YMJ  S1   O8   SING  N  N  76  
YMJ  O8   H4   SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YMJ  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OC1CCC(CCC)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YMJ  InChI             InChI                 1.03   "InChI=1S/C23H41N3O8S/c1-4-5-15-6-8-17(9-7-15)34-23(30)26-18(12-14(2)3)21(28)25-19(22(29)35(31,32)33)13-16-10-11-24-20(16)27/h14-19,22,29H,4-13H2,1-3H3,(H,24,27)(H,25,28)(H,26,30)(H,31,32,33)/t15-,16-,17-,18-,19-,22+/m0/s1"  
YMJ  InChIKey          InChI                 1.03   VCQYBHSDNWQLAS-ZXLNZJBRSA-N  
YMJ  SMILES_CANONICAL  CACTVS                3.385  "CCC[C@@H]1CC[C@H](CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"  
YMJ  SMILES            CACTVS                3.385  "CCC[CH]1CC[CH](CC1)OC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"  
YMJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCC1CCC(CC1)OC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O"  
YMJ  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCC1CCC(CC1)OC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YMJ  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1s,4S)-4-propylcyclohexyl]oxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid"  
YMJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-propylcyclohexyl)oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YMJ  "Create component"  2021-03-12  RCSB  
YMJ  "Initial release"   2021-03-24  RCSB  
##
