data_YMS
#

_chem_comp.id                                   YMS
_chem_comp.name                                 "(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1r,4S)-4-phenylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H39 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-12
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       553.668
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YMS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LZZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YMS  C02  C1   C  0  1  N  N  N  10.383   7.547  22.255   1.501  -0.847   0.266  C02  YMS   1  
YMS  C04  C2   C  0  1  N  N  S  10.775   5.105  22.005  -0.870  -0.881  -0.297  C04  YMS   2  
YMS  C05  C3   C  0  1  N  N  N  11.462   3.996  22.790  -1.214  -2.336  -0.621  C05  YMS   3  
YMS  C06  C4   C  0  1  N  N  N  12.947   4.285  22.977  -2.248  -2.378  -1.748  C06  YMS   4  
YMS  C07  C5   C  0  1  N  N  N  13.530   3.449  24.113  -1.614  -1.859  -3.040  C07  YMS   5  
YMS  C08  C6   C  0  1  N  N  N  13.710   3.996  21.694  -2.721  -3.818  -1.954  C08  YMS   6  
YMS  C09  C7   C  0  1  N  N  N   9.383   4.662  21.599  -2.083  -0.193   0.273  C09  YMS   7  
YMS  C11  C8   C  0  1  N  N  S   7.824   3.784  19.866  -4.182   1.013  -0.006  C11  YMS   8  
YMS  C12  C9   C  0  1  N  N  N   7.350   4.650  18.705  -4.929   0.162   1.023  C12  YMS   9  
YMS  C13  C10  C  0  1  N  N  S   7.064   6.027  19.123  -5.514  -1.074   0.336  C13  YMS  10  
YMS  C14  C11  C  0  1  N  N  N   6.582   6.884  17.870  -6.251  -1.937   1.336  C14  YMS  11  
YMS  C16  C12  C  0  1  N  N  N   5.307   7.322  19.828  -7.626  -1.808  -0.532  C16  YMS  12  
YMS  C17  C13  C  0  1  N  N  N   5.871   6.088  20.055  -6.601  -0.662  -0.684  C17  YMS  13  
YMS  C19  C14  C  0  1  N  N  R   7.868   2.287  19.528  -3.658   2.283   0.666  C19  YMS  14  
YMS  C23  C15  C  0  1  N  N  N   9.932   9.876  22.617   3.855  -0.723   0.638  C23  YMS  15  
YMS  C24  C16  C  0  1  N  N  N  11.150  10.795  22.714   4.801  -1.296   1.696  C24  YMS  16  
YMS  C25  C17  C  0  1  N  N  N  10.791  12.269  22.500   6.229  -1.310   1.148  C25  YMS  17  
YMS  C26  C18  C  0  1  N  N  N   9.670  12.698  23.448   6.656   0.118   0.800  C26  YMS  18  
YMS  C27  C19  C  0  1  Y  N  N   9.340  14.198  23.298   8.063   0.104   0.261  C27  YMS  19  
YMS  C28  C20  C  0  1  Y  N  N   8.339  14.637  22.439   8.358  -0.616  -0.882  C28  YMS  20  
YMS  C29  C21  C  0  1  Y  N  N   8.051  15.990  22.330   9.649  -0.629  -1.377  C29  YMS  21  
YMS  C30  C22  C  0  1  Y  N  N   8.769  16.908  23.076  10.645   0.077  -0.729  C30  YMS  22  
YMS  C31  C23  C  0  1  Y  N  N   9.766  16.476  23.937  10.350   0.798   0.413  C31  YMS  23  
YMS  C32  C24  C  0  1  Y  N  N  10.050  15.123  24.050   9.058   0.815   0.905  C32  YMS  24  
YMS  C33  C25  C  0  1  N  N  N   8.430  11.837  23.178   5.710   0.690  -0.257  C33  YMS  25  
YMS  C34  C26  C  0  1  N  N  N   8.736  10.365  23.433   4.282   0.704   0.291  C34  YMS  26  
YMS  N03  N1   N  0  1  N  N  N  10.652   6.261  22.847   0.219  -0.843   0.682  N03  YMS  27  
YMS  N10  N2   N  0  1  N  N  N   9.150   4.216  20.247  -3.057   0.247  -0.548  N10  YMS  28  
YMS  N15  N3   N  0  1  N  N  N   5.543   7.631  18.300  -7.432  -2.329   0.826  N15  YMS  29  
YMS  O01  O1   O  0  1  N  N  N  10.268   7.668  21.077   1.755  -0.970  -0.916  O01  YMS  30  
YMS  O18  O2   O  0  1  N  N  N   7.045   6.857  16.784  -5.837  -2.232   2.437  O18  YMS  31  
YMS  O20  O3   O  0  1  N  N  N   8.238   1.621  20.703  -4.752   3.010   1.229  O20  YMS  32  
YMS  O21  O4   O  0  1  N  N  N   8.500   4.698  22.383  -2.184  -0.035   1.472  O21  YMS  33  
YMS  O22  O5   O  0  1  N  N  N  10.275   8.620  23.139   2.499  -0.710   1.158  O22  YMS  34  
YMS  H1   H1   H  0  1  N  N  N  11.365   5.338  21.106  -0.557  -0.370  -1.208  H1   YMS  35  
YMS  H2   H2   H  0  1  N  N  N  10.987   3.910  23.778  -0.312  -2.862  -0.936  H2   YMS  36  
YMS  H3   H3   H  0  1  N  N  N  11.348   3.048  22.244  -1.624  -2.819   0.267  H3   YMS  37  
YMS  H4   H4   H  0  1  N  N  N  13.069   5.349  23.227  -3.099  -1.750  -1.483  H4   YMS  38  
YMS  H5   H5   H  0  1  N  N  N  12.979   3.657  25.042  -0.808  -2.527  -3.343  H5   YMS  39  
YMS  H6   H6   H  0  1  N  N  N  13.441   2.381  23.865  -2.370  -1.821  -3.825  H6   YMS  40  
YMS  H7   H7   H  0  1  N  N  N  14.591   3.706  24.250  -1.214  -0.859  -2.873  H7   YMS  41  
YMS  H8   H8   H  0  1  N  N  N  14.778   4.209  21.846  -3.172  -4.188  -1.033  H8   YMS  42  
YMS  H9   H9   H  0  1  N  N  N  13.583   2.938  21.422  -3.457  -3.848  -2.756  H9   YMS  43  
YMS  H10  H10  H  0  1  N  N  N  13.321   4.632  20.885  -1.870  -4.446  -2.218  H10  YMS  44  
YMS  H11  H11  H  0  1  N  N  N   7.135   3.927  20.711  -4.861   1.283  -0.815  H11  YMS  45  
YMS  H12  H12  H  0  1  N  N  N   6.434   4.209  18.285  -4.239  -0.151   1.806  H12  YMS  46  
YMS  H13  H13  H  0  1  N  N  N   8.134   4.669  17.934  -5.736   0.749   1.463  H13  YMS  47  
YMS  H14  H14  H  0  1  N  N  N   7.944   6.501  19.582  -4.726  -1.644  -0.156  H14  YMS  48  
YMS  H15  H15  H  0  1  N  N  N   5.794   8.086  20.452  -8.640  -1.425  -0.647  H15  YMS  49  
YMS  H16  H16  H  0  1  N  N  N   4.230   7.297  20.051  -7.431  -2.588  -1.268  H16  YMS  50  
YMS  H17  H17  H  0  1  N  N  N   5.155   5.286  19.820  -7.045   0.296  -0.415  H17  YMS  51  
YMS  H18  H18  H  0  1  N  N  N   6.193   5.997  21.103  -6.196  -0.632  -1.695  H18  YMS  52  
YMS  S1   S1   S  0  1  N  Y  N   8.572   2.095  18.745  -2.814   3.314  -0.565  S1   YMS  53  
YMS  H20  H20  H  0  1  N  N  N   6.837   1.994  19.281  -2.957   2.013   1.456  H20  YMS  54  
YMS  H21  H21  H  0  1  N  N  N   9.633   9.790  21.562   3.894  -1.343  -0.258  H21  YMS  55  
YMS  H22  H22  H  0  1  N  N  N  11.880  10.495  21.948   4.762  -0.676   2.592  H22  YMS  56  
YMS  H23  H23  H  0  1  N  N  N  11.598  10.682  23.712   4.497  -2.312   1.944  H23  YMS  57  
YMS  H24  H24  H  0  1  N  N  N  11.680  12.888  22.690   6.903  -1.717   1.901  H24  YMS  58  
YMS  H25  H25  H  0  1  N  N  N  10.459  12.412  21.461   6.269  -1.929   0.252  H25  YMS  59  
YMS  H26  H26  H  0  1  N  N  N  10.000  12.518  24.482   6.617   0.737   1.696  H26  YMS  60  
YMS  H27  H27  H  0  1  N  N  N   7.782  13.921  21.853   7.580  -1.168  -1.388  H27  YMS  61  
YMS  H28  H28  H  0  1  N  N  N   7.269  16.326  21.665   9.879  -1.192  -2.270  H28  YMS  62  
YMS  H29  H29  H  0  1  N  N  N   8.552  17.962  22.987  11.653   0.067  -1.116  H29  YMS  63  
YMS  H30  H30  H  0  1  N  N  N  10.323  17.194  24.521  11.128   1.350   0.919  H30  YMS  64  
YMS  H31  H31  H  0  1  N  N  N  10.825  14.789  24.724   8.827   1.381   1.796  H31  YMS  65  
YMS  H32  H32  H  0  1  N  N  N   8.121  11.966  22.130   6.015   1.707  -0.505  H32  YMS  66  
YMS  H33  H33  H  0  1  N  N  N   7.615  12.158  23.843   5.749   0.070  -1.153  H33  YMS  67  
YMS  H34  H34  H  0  1  N  N  N   7.853   9.767  23.162   3.608   1.112  -0.463  H34  YMS  68  
YMS  H35  H35  H  0  1  N  N  N   8.957  10.229  24.502   4.242   1.324   1.186  H35  YMS  69  
YMS  H36  H36  H  0  1  N  N  N  10.752   6.174  23.838   0.017  -0.814   1.631  H36  YMS  70  
YMS  H37  H37  H  0  1  N  N  N   9.896   4.206  19.582  -3.013   0.056  -1.498  H37  YMS  71  
YMS  H38  H38  H  0  1  N  N  N   5.013   8.271  17.744  -8.073  -2.885   1.296  H38  YMS  72  
YMS  H39  H39  H  0  1  N  N  N   8.278   0.686  20.539  -5.249   2.519   1.896  H39  YMS  73  
YMS  O1   O6   O  0  1  N  Y  N       ?       ?       ?  -3.644   3.513  -1.701  O1   YMS  74  
YMS  O2   O7   O  0  1  N  Y  N       ?       ?       ?  -2.160   4.407   0.065  O2   YMS  75  
YMS  O3   O8   O  0  1  N  Y  N       ?       ?       ?  -1.678   2.441  -1.077  O3   YMS  76  
YMS  H19  H19  H  0  1  N  Y  N       ?       ?       ?  -1.130   2.865  -1.752  H19  YMS  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YMS  O18  C14  DOUB  N  N   1  
YMS  C14  N15  SING  N  N   2  
YMS  C14  C13  SING  N  N   3  
YMS  N15  C16  SING  N  N   4  
YMS  C12  C13  SING  N  N   5  
YMS  C12  C11  SING  N  N   6  
YMS  C13  C17  SING  N  N   7  
YMS  C19  C11  SING  N  N   8  
YMS  C19  O20  SING  N  N   9  
YMS  C16  C17  SING  N  N  10  
YMS  C11  N10  SING  N  N  11  
YMS  N10  C09  SING  N  N  12  
YMS  O01  C02  DOUB  N  N  13  
YMS  C09  C04  SING  N  N  14  
YMS  C09  O21  DOUB  N  N  15  
YMS  C08  C06  SING  N  N  16  
YMS  C04  C05  SING  N  N  17  
YMS  C04  N03  SING  N  N  18  
YMS  C02  N03  SING  N  N  19  
YMS  C02  O22  SING  N  N  20  
YMS  C29  C28  DOUB  Y  N  21  
YMS  C29  C30  SING  Y  N  22  
YMS  C28  C27  SING  Y  N  23  
YMS  C25  C24  SING  N  N  24  
YMS  C25  C26  SING  N  N  25  
YMS  C23  C24  SING  N  N  26  
YMS  C23  O22  SING  N  N  27  
YMS  C23  C34  SING  N  N  28  
YMS  C05  C06  SING  N  N  29  
YMS  C06  C07  SING  N  N  30  
YMS  C30  C31  DOUB  Y  N  31  
YMS  C33  C34  SING  N  N  32  
YMS  C33  C26  SING  N  N  33  
YMS  C27  C26  SING  N  N  34  
YMS  C27  C32  DOUB  Y  N  35  
YMS  C31  C32  SING  Y  N  36  
YMS  C04  H1   SING  N  N  37  
YMS  C05  H2   SING  N  N  38  
YMS  C05  H3   SING  N  N  39  
YMS  C06  H4   SING  N  N  40  
YMS  C07  H5   SING  N  N  41  
YMS  C07  H6   SING  N  N  42  
YMS  C07  H7   SING  N  N  43  
YMS  C08  H8   SING  N  N  44  
YMS  C08  H9   SING  N  N  45  
YMS  C08  H10  SING  N  N  46  
YMS  C11  H11  SING  N  N  47  
YMS  C12  H12  SING  N  N  48  
YMS  C12  H13  SING  N  N  49  
YMS  C13  H14  SING  N  N  50  
YMS  C16  H15  SING  N  N  51  
YMS  C16  H16  SING  N  N  52  
YMS  C17  H17  SING  N  N  53  
YMS  C17  H18  SING  N  N  54  
YMS  C19  S1   SING  N  N  55  
YMS  C19  H20  SING  N  N  56  
YMS  C23  H21  SING  N  N  57  
YMS  C24  H22  SING  N  N  58  
YMS  C24  H23  SING  N  N  59  
YMS  C25  H24  SING  N  N  60  
YMS  C25  H25  SING  N  N  61  
YMS  C26  H26  SING  N  N  62  
YMS  C28  H27  SING  N  N  63  
YMS  C29  H28  SING  N  N  64  
YMS  C30  H29  SING  N  N  65  
YMS  C31  H30  SING  N  N  66  
YMS  C32  H31  SING  N  N  67  
YMS  C33  H32  SING  N  N  68  
YMS  C33  H33  SING  N  N  69  
YMS  C34  H34  SING  N  N  70  
YMS  C34  H35  SING  N  N  71  
YMS  N03  H36  SING  N  N  72  
YMS  N10  H37  SING  N  N  73  
YMS  N15  H38  SING  N  N  74  
YMS  O20  H39  SING  N  N  75  
YMS  S1   O1   DOUB  N  N  76  
YMS  S1   O2   DOUB  N  N  77  
YMS  S1   O3   SING  N  N  78  
YMS  O3   H19  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YMS  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OC1CCC(CC1)c1ccccc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YMS  InChI             InChI                 1.03   "InChI=1S/C26H39N3O8S/c1-16(2)14-21(24(31)28-22(25(32)38(34,35)36)15-19-12-13-27-23(19)30)29-26(33)37-20-10-8-18(9-11-20)17-6-4-3-5-7-17/h3-7,16,18-22,25,32H,8-15H2,1-2H3,(H,27,30)(H,28,31)(H,29,33)(H,34,35,36)/t18-,19-,20-,21-,22-,25+/m0/s1"  
YMS  InChIKey          InChI                 1.03   GQBZOCZYIKJBAR-JACXQYEBSA-N  
YMS  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)O[C@@H]1CC[C@H](CC1)c2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"  
YMS  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)O[CH]1CC[CH](CC1)c2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
YMS  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)c3ccccc3"  
YMS  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)c3ccccc3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YMS  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1r,4S)-4-phenylcyclohexyl]oxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid"  
YMS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-phenylcyclohexyl)oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YMS  "Create component"  2021-03-12  RCSB  
YMS  "Initial release"   2021-03-24  RCSB  
##
