data_YMV
#

_chem_comp.id                                   YMV
_chem_comp.name                                 "(1S,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1r,4S)-4-phenylcyclohexyl)oxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H39 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-12
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       553.668
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YMV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LZZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YMV  C02  C1   C  0  1  N  N  N  10.405   7.576  22.255   1.872  -1.126   0.142  C02  YMV   1  
YMV  C04  C2   C  0  1  N  N  S  10.814   5.133  22.031  -0.482  -1.350  -0.444  C04  YMV   2  
YMV  C05  C3   C  0  1  N  N  N  11.461   4.009  22.829  -0.637  -2.743  -1.059  C05  YMV   3  
YMV  C06  C4   C  0  1  N  N  N  12.943   4.290  23.059  -1.679  -2.693  -2.179  C06  YMV   4  
YMV  C07  C5   C  0  1  N  N  N  13.498   3.421  24.183  -1.150  -1.835  -3.329  C07  YMV   5  
YMV  C08  C6   C  0  1  N  N  N  13.739   4.046  21.787  -1.952  -4.111  -2.684  C08  YMV   6  
YMV  C09  C7   C  0  1  N  N  N   9.393   4.762  21.656  -1.767  -0.956   0.238  C09  YMV   7  
YMV  C11  C8   C  0  1  N  N  S   7.851   3.618  20.049  -3.996   0.027   0.189  C11  YMV   8  
YMV  C12  C9   C  0  1  N  N  N   7.392   4.537  18.924  -4.615   1.162  -0.630  C12  YMV   9  
YMV  C13  C10  C  0  1  N  N  S   7.168   5.912  19.373  -3.633   2.333  -0.704  C13  YMV  10  
YMV  C14  C11  C  0  1  N  N  N   6.802   6.795  18.106  -4.219   3.465  -1.518  C14  YMV  11  
YMV  C16  C12  C  0  1  N  N  N   5.423   7.272  19.983  -3.288   4.450   0.368  C16  YMV  12  
YMV  C17  C13  C  0  1  N  N  N   5.936   6.023  20.248  -3.416   2.946   0.698  C17  YMV  13  
YMV  C19  C14  C  0  1  N  N  S   7.920   2.150  19.618  -5.003  -1.117   0.319  C19  YMV  14  
YMV  C23  C15  C  0  1  N  N  N   9.886   9.883  22.616   4.196  -0.780   0.560  C23  YMV  15  
YMV  C24  C16  C  0  1  N  N  N  11.129  10.766  22.738   5.222  -1.425   1.494  C24  YMV  16  
YMV  C25  C17  C  0  1  N  N  N  10.811  12.254  22.557   6.633  -1.148   0.971  C25  YMV  17  
YMV  C26  C18  C  0  1  N  N  N   9.692  12.689  23.504   6.871   0.362   0.918  C26  YMV  18  
YMV  C27  C19  C  0  1  Y  N  N   9.406  14.201  23.396   8.260   0.634   0.403  C27  YMV  19  
YMV  C28  C20  C  0  1  Y  N  N   8.424  14.688  22.541   8.628   0.199  -0.857  C28  YMV  20  
YMV  C29  C21  C  0  1  Y  N  N   8.174  16.050  22.466   9.903   0.448  -1.329  C29  YMV  21  
YMV  C30  C22  C  0  1  Y  N  N   8.909  16.929  23.244  10.810   1.133  -0.542  C30  YMV  22  
YMV  C31  C23  C  0  1  Y  N  N   9.887  16.448  24.102  10.442   1.570   0.716  C31  YMV  23  
YMV  C32  C24  C  0  1  Y  N  N  10.134  15.085  24.180   9.165   1.325   1.187  C32  YMV  24  
YMV  C33  C25  C  0  1  N  N  N   8.432  11.877  23.190   5.845   1.007  -0.017  C33  YMV  25  
YMV  C34  C26  C  0  1  N  N  N   8.685  10.392  23.413   4.434   0.731   0.506  C34  YMV  26  
YMV  N03  N1   N  0  1  N  N  N  10.770   6.314  22.844   0.606  -1.367   0.536  N03  YMV  27  
YMV  N10  N2   N  0  1  N  N  N   9.184   4.003  20.450  -2.789  -0.459  -0.486  N10  YMV  28  
YMV  N15  N3   N  0  1  N  N  N   5.764   7.578  18.473  -4.016   4.637  -0.892  N15  YMV  29  
YMV  O01  O1   O  0  1  N  N  N  10.313   7.702  21.076   2.124  -0.979  -1.038  O01  YMV  30  
YMV  O18  O2   O  0  1  N  N  N   7.343   6.742  17.059  -4.789   3.334  -2.580  O18  YMV  31  
YMV  O20  O3   O  0  1  N  N  N   6.654   1.680  19.237  -4.383  -2.225   0.975  O20  YMV  32  
YMV  O21  O4   O  0  1  N  N  N   8.484   5.105  22.329  -1.881  -1.087   1.438  O21  YMV  33  
YMV  O22  O5   O  0  1  N  N  N  10.178   8.619  23.147   2.857  -1.042   1.056  O22  YMV  34  
YMV  H1   H1   H  0  1  N  N  N  11.398   5.314  21.117  -0.252  -0.630  -1.230  H1   YMV  35  
YMV  H2   H2   H  0  1  N  N  N  10.956   3.921  23.802   0.320  -3.068  -1.467  H2   YMV  36  
YMV  H3   H3   H  0  1  N  N  N  11.355   3.065  22.274  -0.962  -3.444  -0.291  H3   YMV  37  
YMV  H4   H4   H  0  1  N  N  N  13.057   5.346  23.346  -2.602  -2.259  -1.796  H4   YMV  38  
YMV  H5   H5   H  0  1  N  N  N  12.922   3.598  25.103  -0.263  -2.304  -3.755  H5   YMV  39  
YMV  H6   H6   H  0  1  N  N  N  13.419   2.361  23.900  -1.917  -1.744  -4.098  H6   YMV  40  
YMV  H7   H7   H  0  1  N  N  N  14.554   3.677  24.357  -0.892  -0.844  -2.955  H7   YMV  41  
YMV  H8   H8   H  0  1  N  N  N  14.803   4.254  21.974  -2.329  -4.722  -1.864  H8   YMV  42  
YMV  H9   H9   H  0  1  N  N  N  13.620   2.998  21.475  -2.694  -4.075  -3.482  H9   YMV  43  
YMV  H10  H10  H  0  1  N  N  N  13.370   4.710  20.991  -1.029  -4.545  -3.066  H10  YMV  44  
YMV  H11  H11  H  0  1  N  N  N   7.157   3.711  20.897  -3.734   0.396   1.181  H11  YMV  45  
YMV  H12  H12  H  0  1  N  N  N   6.451   4.144  18.511  -4.833   0.806  -1.637  H12  YMV  46  
YMV  H13  H13  H  0  1  N  N  N   8.163   4.544  18.139  -5.538   1.492  -0.153  H13  YMV  47  
YMV  H14  H14  H  0  1  N  N  N   8.052   6.327  19.880  -2.683   2.007  -1.129  H14  YMV  48  
YMV  H15  H15  H  0  1  N  N  N   5.889   8.022  20.639  -3.740   5.050   1.158  H15  YMV  49  
YMV  H16  H16  H  0  1  N  N  N   4.334   7.277  20.136  -2.239   4.721   0.243  H16  YMV  50  
YMV  H17  H17  H  0  1  N  N  N   5.206   5.242  19.989  -4.275   2.760   1.343  H17  YMV  51  
YMV  H18  H18  H  0  1  N  N  N   6.207   5.934  21.310  -2.500   2.568   1.153  H18  YMV  52  
YMV  S1   S1   S  0  1  N  Y  N   8.611   2.038  18.809  -6.429  -0.558   1.292  S1   YMV  53  
YMV  H20  H20  H  0  1  N  N  N   8.219   1.589  20.516  -5.337  -1.421  -0.673  H20  YMV  54  
YMV  H21  H21  H  0  1  N  N  N   9.605   9.805  21.555   4.302  -1.200  -0.441  H21  YMV  55  
YMV  H22  H22  H  0  1  N  N  N  11.854  10.464  21.968   5.117  -1.005   2.494  H22  YMV  56  
YMV  H23  H23  H  0  1  N  N  N  11.570  10.618  23.735   5.053  -2.501   1.532  H23  YMV  57  
YMV  H24  H24  H  0  1  N  N  N  11.714  12.844  22.771   7.364  -1.608   1.637  H24  YMV  58  
YMV  H25  H25  H  0  1  N  N  N  10.494  12.431  21.519   6.739  -1.568  -0.029  H25  YMV  59  
YMV  H26  H26  H  0  1  N  N  N  10.002  12.468  24.536   6.765   0.782   1.918  H26  YMV  60  
YMV  H27  H27  H  0  1  N  N  N   7.853  14.002  21.932   7.920  -0.337  -1.471  H27  YMV  61  
YMV  H28  H28  H  0  1  N  N  N   7.408  16.424  21.803  10.191   0.107  -2.312  H28  YMV  62  
YMV  H29  H29  H  0  1  N  N  N   8.720  17.991  23.183  11.807   1.327  -0.911  H29  YMV  63  
YMV  H30  H30  H  0  1  N  N  N  10.457  17.135  24.710  11.150   2.105   1.331  H30  YMV  64  
YMV  H31  H31  H  0  1  N  N  N  10.893  14.712  24.851   8.876   1.669   2.169  H31  YMV  65  
YMV  H32  H32  H  0  1  N  N  N   8.147  12.042  22.140   6.014   2.083  -0.055  H32  YMV  66  
YMV  H33  H33  H  0  1  N  N  N   7.615  12.208  23.848   5.950   0.587  -1.017  H33  YMV  67  
YMV  H34  H34  H  0  1  N  N  N   7.791   9.830  23.104   3.703   1.190  -0.159  H34  YMV  68  
YMV  H35  H35  H  0  1  N  N  N   8.873  10.222  24.483   4.328   1.151   1.507  H35  YMV  69  
YMV  H36  H36  H  0  1  N  N  N  10.992   6.261  23.818   0.416  -1.553   1.469  H36  YMV  70  
YMV  H37  H37  H  0  1  N  N  N   9.967   3.741  19.886  -2.726  -0.423  -1.453  H37  YMV  71  
YMV  H38  H38  H  0  1  N  N  N   5.293   8.238  17.888  -4.314   5.497  -1.230  H38  YMV  72  
YMV  H39  H39  H  0  1  N  N  N   6.720   0.769  18.974  -3.612  -2.576   0.509  H39  YMV  73  
YMV  O1   O6   O  0  1  N  Y  N       ?       ?       ?  -7.403  -1.589   1.385  O1   YMV  74  
YMV  O2   O7   O  0  1  N  Y  N       ?       ?       ?  -5.998   0.149   2.447  O2   YMV  75  
YMV  O3   O8   O  0  1  N  Y  N       ?       ?       ?  -7.088   0.504   0.425  O3   YMV  76  
YMV  H19  H19  H  0  1  N  Y  N       ?       ?       ?  -7.877   0.901   0.820  H19  YMV  77  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YMV  O18  C14  DOUB  N  N   1  
YMV  C14  N15  SING  N  N   2  
YMV  C14  C13  SING  N  N   3  
YMV  N15  C16  SING  N  N   4  
YMV  C12  C13  SING  N  N   5  
YMV  C12  C11  SING  N  N   6  
YMV  O20  C19  SING  N  N   7  
YMV  C13  C17  SING  N  N   8  
YMV  C19  C11  SING  N  N   9  
YMV  C16  C17  SING  N  N  10  
YMV  C11  N10  SING  N  N  11  
YMV  N10  C09  SING  N  N  12  
YMV  O01  C02  DOUB  N  N  13  
YMV  C09  C04  SING  N  N  14  
YMV  C09  O21  DOUB  N  N  15  
YMV  C08  C06  SING  N  N  16  
YMV  C04  C05  SING  N  N  17  
YMV  C04  N03  SING  N  N  18  
YMV  C02  N03  SING  N  N  19  
YMV  C02  O22  SING  N  N  20  
YMV  C29  C28  DOUB  Y  N  21  
YMV  C29  C30  SING  Y  N  22  
YMV  C28  C27  SING  Y  N  23  
YMV  C25  C24  SING  N  N  24  
YMV  C25  C26  SING  N  N  25  
YMV  C23  C24  SING  N  N  26  
YMV  C23  O22  SING  N  N  27  
YMV  C23  C34  SING  N  N  28  
YMV  C05  C06  SING  N  N  29  
YMV  C06  C07  SING  N  N  30  
YMV  C33  C34  SING  N  N  31  
YMV  C33  C26  SING  N  N  32  
YMV  C30  C31  DOUB  Y  N  33  
YMV  C27  C26  SING  N  N  34  
YMV  C27  C32  DOUB  Y  N  35  
YMV  C31  C32  SING  Y  N  36  
YMV  C04  H1   SING  N  N  37  
YMV  C05  H2   SING  N  N  38  
YMV  C05  H3   SING  N  N  39  
YMV  C06  H4   SING  N  N  40  
YMV  C07  H5   SING  N  N  41  
YMV  C07  H6   SING  N  N  42  
YMV  C07  H7   SING  N  N  43  
YMV  C08  H8   SING  N  N  44  
YMV  C08  H9   SING  N  N  45  
YMV  C08  H10  SING  N  N  46  
YMV  C11  H11  SING  N  N  47  
YMV  C12  H12  SING  N  N  48  
YMV  C12  H13  SING  N  N  49  
YMV  C13  H14  SING  N  N  50  
YMV  C16  H15  SING  N  N  51  
YMV  C16  H16  SING  N  N  52  
YMV  C17  H17  SING  N  N  53  
YMV  C17  H18  SING  N  N  54  
YMV  C19  S1   SING  N  N  55  
YMV  C19  H20  SING  N  N  56  
YMV  C23  H21  SING  N  N  57  
YMV  C24  H22  SING  N  N  58  
YMV  C24  H23  SING  N  N  59  
YMV  C25  H24  SING  N  N  60  
YMV  C25  H25  SING  N  N  61  
YMV  C26  H26  SING  N  N  62  
YMV  C28  H27  SING  N  N  63  
YMV  C29  H28  SING  N  N  64  
YMV  C30  H29  SING  N  N  65  
YMV  C31  H30  SING  N  N  66  
YMV  C32  H31  SING  N  N  67  
YMV  C33  H32  SING  N  N  68  
YMV  C33  H33  SING  N  N  69  
YMV  C34  H34  SING  N  N  70  
YMV  C34  H35  SING  N  N  71  
YMV  N03  H36  SING  N  N  72  
YMV  N10  H37  SING  N  N  73  
YMV  N15  H38  SING  N  N  74  
YMV  O20  H39  SING  N  N  75  
YMV  S1   O1   DOUB  N  N  76  
YMV  S1   O2   DOUB  N  N  77  
YMV  S1   O3   SING  N  N  78  
YMV  O3   H19  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YMV  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OC1CCC(CC1)c1ccccc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YMV  InChI             InChI                 1.03   "InChI=1S/C26H39N3O8S/c1-16(2)14-21(24(31)28-22(25(32)38(34,35)36)15-19-12-13-27-23(19)30)29-26(33)37-20-10-8-18(9-11-20)17-6-4-3-5-7-17/h3-7,16,18-22,25,32H,8-15H2,1-2H3,(H,27,30)(H,28,31)(H,29,33)(H,34,35,36)/t18-,19-,20-,21-,22-,25-/m0/s1"  
YMV  InChIKey          InChI                 1.03   GQBZOCZYIKJBAR-GAJBLSCZSA-N  
YMV  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)O[C@@H]1CC[C@H](CC1)c2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"  
YMV  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)O[CH]1CC[CH](CC1)c2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
YMV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)c3ccccc3"  
YMV  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC2CCC(CC2)c3ccccc3"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YMV  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1r,4S)-4-phenylcyclohexyl]oxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid"  
YMV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-phenylcyclohexyl)oxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YMV  "Create component"  2021-03-12  RCSB  
YMV  "Initial release"   2021-03-24  RCSB  
##
