data_YMY
#

_chem_comp.id                                   YMY
_chem_comp.name                                 "(1R,2S)-1-hydroxy-2-((S)-4-methyl-2-(((((1s,4S)-4-propylcyclohexyl)methoxy)carbonyl)amino)pentanamido)-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H43 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-12
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       533.679
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YMY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LZT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YMY  C13  C1   C  0  1  N  N  S  10.330   4.940  22.099    0.766   0.129   0.998  C13  YMY   1  
YMY  C15  C2   C  0  1  N  N  N  12.434   4.525  23.423   -0.162  -0.932   3.061  C15  YMY   2  
YMY  C21  C3   C  0  1  N  N  N   9.071   9.700  22.147   -4.003   0.789   0.756  C21  YMY   3  
YMY  C22  C4   C  0  1  N  N  N   9.811  10.995  22.592   -5.209   0.520  -0.147  C22  YMY   4  
YMY  C24  C5   C  0  1  N  N  N   9.727  13.503  22.444   -6.641  -1.257  -1.163  C24  YMY   5  
YMY  C01  C6   C  0  1  N  N  R   7.587   2.008  19.521    4.057   1.553  -1.411  C01  YMY   6  
YMY  C03  C7   C  0  1  N  N  S   7.461   3.463  19.967    4.286   0.358  -0.484  C03  YMY   7  
YMY  C04  C8   C  0  1  N  N  N   6.957   4.378  18.823    4.359  -0.925  -1.314  C04  YMY   8  
YMY  C05  C9   C  0  1  N  N  S   6.812   5.881  19.276    4.683  -2.107  -0.398  C05  YMY   9  
YMY  C09  C10  C  0  1  N  N  N   5.819   6.044  20.194    6.098  -1.952   0.206  C09  YMY  10  
YMY  C12  C11  C  0  1  N  N  N   8.919   4.436  21.768    1.915   0.119   0.024  C12  YMY  11  
YMY  C19  C12  C  0  1  N  N  N   9.890   7.413  21.962   -1.645   0.422   0.797  C19  YMY  12  
YMY  C23  C13  C  0  1  N  N  N   9.068  12.190  22.010   -5.435  -0.988  -0.260  C23  YMY  13  
YMY  C25  C14  C  0  1  N  N  N   9.729  13.605  23.966   -7.884  -0.598  -0.562  C25  YMY  14  
YMY  C06  C15  C  0  1  N  N  N   6.469   6.814  18.021    4.759  -3.390  -1.196  C06  YMY  15  
YMY  C08  C16  C  0  1  N  N  N   5.111   7.406  19.860    6.594  -3.415   0.228  C08  YMY  16  
YMY  C14  C17  C  0  1  N  N  N  11.056   3.963  22.974    0.935  -1.016   1.998  C14  YMY  17  
YMY  C16  C18  C  0  1  N  N  N  13.353   4.890  22.222   -0.069  -2.146   3.988  C16  YMY  18  
YMY  C17  C19  C  0  1  N  N  N  13.121   3.503  24.372    0.018   0.349   3.879  C17  YMY  19  
YMY  C26  C20  C  0  1  N  N  N  10.470  14.900  24.406   -9.090  -0.867  -1.464  C26  YMY  20  
YMY  C27  C21  C  0  1  N  N  N   9.610  16.194  24.111  -10.355  -0.316  -0.802  C27  YMY  21  
YMY  C28  C22  C  0  1  N  N  N  10.232  17.471  24.792  -11.561  -0.584  -1.704  C28  YMY  22  
YMY  C29  C23  C  0  1  N  N  N  10.387  12.405  24.646   -7.658   0.911  -0.448  C29  YMY  23  
YMY  C30  C24  C  0  1  N  N  N   9.921  11.034  24.111   -6.452   1.179   0.454  C30  YMY  24  
YMY  N07  N1   N  0  1  N  N  N   5.486   7.698  18.375    5.840  -4.100  -0.829  N07  YMY  25  
YMY  N11  N2   N  0  1  N  N  N   8.739   3.956  20.413    3.179   0.261   0.470  N11  YMY  26  
YMY  N18  N3   N  0  1  N  N  N  10.181   6.218  22.764   -0.494  -0.040   0.270  N18  YMY  27  
YMY  O02  O1   O  0  1  N  N  N   7.931   1.259  20.658    5.126   1.634  -2.357  O02  YMY  28  
YMY  O10  O2   O  0  1  N  N  N   6.988   6.763  16.948    3.960  -3.729  -2.043  O10  YMY  29  
YMY  O20  O3   O  0  1  N  N  N   9.835   8.619  22.713   -2.802   0.266   0.127  O20  YMY  30  
YMY  O31  O4   O  0  1  N  N  N   9.730   7.386  20.782   -1.638   0.979   1.877  O31  YMY  31  
YMY  O32  O5   O  0  1  N  N  N   8.020   4.453  22.565    1.703  -0.016  -1.163  O32  YMY  32  
YMY  H1   H1   H  0  1  N  N  N  10.888   5.069  21.160    0.751   1.079   1.533  H1   YMY  33  
YMY  H2   H2   H  0  1  N  N  N  12.250   5.445  23.997   -1.138  -0.919   2.576  H2   YMY  34  
YMY  H3   H3   H  0  1  N  N  N   8.042   9.690  22.535   -3.895   1.862   0.908  H3   YMY  35  
YMY  H4   H4   H  0  1  N  N  N   9.050   9.625  21.050   -4.152   0.298   1.717  H4   YMY  36  
YMY  H5   H5   H  0  1  N  N  N  10.826  10.973  22.168   -5.021   0.935  -1.137  H5   YMY  37  
YMY  H6   H6   H  0  1  N  N  N  10.763  13.530  22.075   -6.453  -0.842  -2.153  H6   YMY  38  
YMY  H7   H7   H  0  1  N  N  N   9.165  14.350  22.023   -6.802  -2.332  -1.243  H7   YMY  39  
YMY  S1   S1   S  0  1  N  Y  N   8.334   1.908  18.762    4.001   3.078  -0.430  S1   YMY  40  
YMY  H9   H9   H  0  1  N  N  N   6.583   1.693  19.200    3.113   1.426  -1.940  H9   YMY  41  
YMY  H10  H10  H  0  1  N  N  N   6.736   3.514  20.793    5.222   0.493   0.059  H10  YMY  42  
YMY  H11  H11  H  0  1  N  N  N   5.975   4.014  18.486    3.400  -1.097  -1.802  H11  YMY  43  
YMY  H12  H12  H  0  1  N  N  N   7.673   4.328  17.989    5.139  -0.826  -2.069  H12  YMY  44  
YMY  H13  H13  H  0  1  N  N  N   7.781   6.209  19.682    3.938  -2.191   0.393  H13  YMY  45  
YMY  H14  H14  H  0  1  N  N  N   5.099   5.216  20.124    6.730  -1.336  -0.435  H14  YMY  46  
YMY  H15  H15  H  0  1  N  N  N   6.243   6.076  21.209    6.050  -1.540   1.214  H15  YMY  47  
YMY  H16  H16  H  0  1  N  N  N   8.027  12.175  22.364   -4.549  -1.458  -0.688  H16  YMY  48  
YMY  H17  H17  H  0  1  N  N  N   9.083  12.124  20.912   -5.623  -1.403   0.730  H17  YMY  49  
YMY  H18  H18  H  0  1  N  N  N   8.687  13.673  24.312   -8.072  -1.013   0.429  H18  YMY  50  
YMY  H19  H19  H  0  1  N  N  N   5.481   8.206  20.517    7.662  -3.455   0.016  H19  YMY  51  
YMY  H20  H20  H  0  1  N  N  N   4.021   7.314  19.973    6.385  -3.869   1.197  H20  YMY  52  
YMY  H21  H21  H  0  1  N  N  N  10.445   3.757  23.865    0.861  -1.969   1.474  H21  YMY  53  
YMY  H22  H22  H  0  1  N  N  N  11.215   3.029  22.414    1.911  -0.940   2.477  H22  YMY  54  
YMY  H23  H23  H  0  1  N  N  N  14.310   5.281  22.598   -0.851  -2.085   4.745  H23  YMY  55  
YMY  H24  H24  H  0  1  N  N  N  13.537   3.991  21.615   -0.197  -3.058   3.405  H24  YMY  56  
YMY  H25  H25  H  0  1  N  N  N  12.862   5.656  21.604    0.907  -2.159   4.473  H25  YMY  57  
YMY  H26  H26  H  0  1  N  N  N  12.446   3.267  25.208   -0.048   1.214   3.219  H26  YMY  58  
YMY  H27  H27  H  0  1  N  N  N  13.350   2.582  23.815   -0.763   0.409   4.636  H27  YMY  59  
YMY  H28  H28  H  0  1  N  N  N  14.053   3.936  24.764    0.994   0.336   4.364  H28  YMY  60  
YMY  H29  H29  H  0  1  N  N  N  10.673  14.845  25.486   -8.941  -0.376  -2.426  H29  YMY  61  
YMY  H30  H30  H  0  1  N  N  N  11.421  14.971  23.857   -9.198  -1.940  -1.617  H30  YMY  62  
YMY  H31  H31  H  0  1  N  N  N   9.568  16.354  23.024  -10.505  -0.807   0.160  H31  YMY  63  
YMY  H32  H32  H  0  1  N  N  N   8.592  16.042  24.499  -10.248   0.758  -0.649  H32  YMY  64  
YMY  H33  H33  H  0  1  N  N  N   9.609  18.348  24.565  -12.462  -0.192  -1.233  H33  YMY  65  
YMY  H34  H34  H  0  1  N  N  N  10.273  17.322  25.881  -11.412  -0.094  -2.666  H34  YMY  66  
YMY  H35  H35  H  0  1  N  N  N  11.249  17.634  24.405  -11.669  -1.658  -1.857  H35  YMY  67  
YMY  H36  H36  H  0  1  N  N  N  11.475  12.480  24.499   -7.470   1.325  -1.439  H36  YMY  68  
YMY  H37  H37  H  0  1  N  N  N  10.158  12.451  25.721   -8.544   1.380  -0.020  H37  YMY  69  
YMY  H38  H38  H  0  1  N  N  N   8.934  10.807  24.540   -6.640   0.764   1.445  H38  YMY  70  
YMY  H39  H39  H  0  1  N  N  N  10.644  10.269  24.430   -6.291   2.254   0.535  H39  YMY  71  
YMY  H40  H40  H  0  1  N  N  N   5.083   8.401  17.789    6.090  -4.954  -1.214  H40  YMY  72  
YMY  H41  H41  H  0  1  N  N  N   9.512   3.967  19.779    3.355   0.298   1.423  H41  YMY  73  
YMY  H42  H42  H  0  1  N  N  N  10.275   6.286  23.757   -0.499  -0.485  -0.592  H42  YMY  74  
YMY  H43  H43  H  0  1  N  N  N   8.019   0.344  20.420    5.215   0.851  -2.917  H43  YMY  75  
YMY  O1   O6   O  0  1  N  Y  N       ?       ?       ?    5.128   3.159   0.431  O1   YMY  76  
YMY  O2   O7   O  0  1  N  Y  N       ?       ?       ?    3.619   4.180  -1.242  O2   YMY  77  
YMY  O3   O8   O  0  1  N  Y  N       ?       ?       ?    2.822   2.880   0.512  O3   YMY  78  
YMY  H8   H8   H  0  1  N  Y  N       ?       ?       ?    2.665   3.625   1.108  H8   YMY  79  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YMY  O10  C06  DOUB  N  N   1  
YMY  C06  N07  SING  N  N   2  
YMY  C06  C05  SING  N  N   3  
YMY  N07  C08  SING  N  N   4  
YMY  C04  C05  SING  N  N   5  
YMY  C04  C03  SING  N  N   6  
YMY  C05  C09  SING  N  N   7  
YMY  C01  C03  SING  N  N   8  
YMY  C01  O02  SING  N  N   9  
YMY  C08  C09  SING  N  N  10  
YMY  C03  N11  SING  N  N  11  
YMY  N11  C12  SING  N  N  12  
YMY  O31  C19  DOUB  N  N  13  
YMY  C12  C13  SING  N  N  14  
YMY  C12  O32  DOUB  N  N  15  
YMY  C19  O20  SING  N  N  16  
YMY  C19  N18  SING  N  N  17  
YMY  C23  C24  SING  N  N  18  
YMY  C23  C22  SING  N  N  19  
YMY  C13  N18  SING  N  N  20  
YMY  C13  C14  SING  N  N  21  
YMY  C21  C22  SING  N  N  22  
YMY  C21  O20  SING  N  N  23  
YMY  C16  C15  SING  N  N  24  
YMY  C24  C25  SING  N  N  25  
YMY  C22  C30  SING  N  N  26  
YMY  C14  C15  SING  N  N  27  
YMY  C15  C17  SING  N  N  28  
YMY  C25  C26  SING  N  N  29  
YMY  C25  C29  SING  N  N  30  
YMY  C30  C29  SING  N  N  31  
YMY  C27  C26  SING  N  N  32  
YMY  C27  C28  SING  N  N  33  
YMY  C13  H1   SING  N  N  34  
YMY  C15  H2   SING  N  N  35  
YMY  C21  H3   SING  N  N  36  
YMY  C21  H4   SING  N  N  37  
YMY  C22  H5   SING  N  N  38  
YMY  C24  H6   SING  N  N  39  
YMY  C24  H7   SING  N  N  40  
YMY  C01  S1   SING  N  N  41  
YMY  C01  H9   SING  N  N  42  
YMY  C03  H10  SING  N  N  43  
YMY  C04  H11  SING  N  N  44  
YMY  C04  H12  SING  N  N  45  
YMY  C05  H13  SING  N  N  46  
YMY  C09  H14  SING  N  N  47  
YMY  C09  H15  SING  N  N  48  
YMY  C23  H16  SING  N  N  49  
YMY  C23  H17  SING  N  N  50  
YMY  C25  H18  SING  N  N  51  
YMY  C08  H19  SING  N  N  52  
YMY  C08  H20  SING  N  N  53  
YMY  C14  H21  SING  N  N  54  
YMY  C14  H22  SING  N  N  55  
YMY  C16  H23  SING  N  N  56  
YMY  C16  H24  SING  N  N  57  
YMY  C16  H25  SING  N  N  58  
YMY  C17  H26  SING  N  N  59  
YMY  C17  H27  SING  N  N  60  
YMY  C17  H28  SING  N  N  61  
YMY  C26  H29  SING  N  N  62  
YMY  C26  H30  SING  N  N  63  
YMY  C27  H31  SING  N  N  64  
YMY  C27  H32  SING  N  N  65  
YMY  C28  H33  SING  N  N  66  
YMY  C28  H34  SING  N  N  67  
YMY  C28  H35  SING  N  N  68  
YMY  C29  H36  SING  N  N  69  
YMY  C29  H37  SING  N  N  70  
YMY  C30  H38  SING  N  N  71  
YMY  C30  H39  SING  N  N  72  
YMY  N07  H40  SING  N  N  73  
YMY  N11  H41  SING  N  N  74  
YMY  N18  H42  SING  N  N  75  
YMY  O02  H43  SING  N  N  76  
YMY  S1   O1   DOUB  N  N  77  
YMY  S1   O2   DOUB  N  N  78  
YMY  S1   O3   SING  N  N  79  
YMY  O3   H8   SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YMY  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OCC1CCC(CCC)CC1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
YMY  InChI             InChI                 1.03   "InChI=1S/C24H43N3O8S/c1-4-5-16-6-8-17(9-7-16)14-35-24(31)27-19(12-15(2)3)22(29)26-20(23(30)36(32,33)34)13-18-10-11-25-21(18)28/h15-20,23,30H,4-14H2,1-3H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t16-,17-,18-,19-,20-,23+/m0/s1"  
YMY  InChIKey          InChI                 1.03   ZJKUZJJPWZXFHP-LLQGSFPOSA-N  
YMY  SMILES_CANONICAL  CACTVS                3.385  "CCC[C@H]1CC[C@@H](CC1)COC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O"  
YMY  SMILES            CACTVS                3.385  "CCC[CH]1CC[CH](CC1)COC(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"  
YMY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCC1CCC(CC1)COC(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C(O)S(=O)(=O)O"  
YMY  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCC1CCC(CC1)COC(=O)NC(CC(C)C)C(=O)NC(CC2CCNC2=O)C(O)S(=O)(=O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YMY  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-{[N-({[(1s,4S)-4-propylcyclohexyl]methoxy}carbonyl)-L-leucyl]amino}propane-1-sulfonic acid"  
YMY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-2-[[(2~{S})-4-methyl-2-[(4-propylcyclohexyl)methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YMY  "Create component"  2021-03-12  RCSB  
YMY  "Initial release"   2021-03-24  RCSB  
##
