data_YPP
#

_chem_comp.id                                   YPP
_chem_comp.name                                 "Hydrolyzed piperacillin"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H29 N5 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2R,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-01-06
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       535.570
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YPP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3Q07
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YPP  C     C     C  0  1  N  N  N   -4.368  -16.170  14.501  -2.279  -2.675  -1.156  C     YPP   1  
YPP  N     N     N  0  1  N  N  N   -6.191  -16.473  12.856  -1.395  -0.479  -0.623  N     YPP   2  
YPP  O     O     O  0  1  N  N  N   -3.855  -16.443  15.610  -1.859  -2.531  -2.280  O     YPP   3  
YPP  CA    CA    C  0  1  N  N  R   -5.582  -17.008  14.085  -2.381  -1.490  -0.231  CA    YPP   4  
YPP  CB    CB    C  0  1  N  N  R   -5.188  -18.481  13.944  -3.786  -0.892  -0.321  CB    YPP   5  
YPP  NAE   NAE   N  0  1  N  N  N   -4.220  -18.686  12.798  -3.952   0.238   0.636  NAE   YPP   6  
YPP  CAG   CAG   C  0  1  N  N  S   -4.931  -19.303  11.612  -5.371   0.503   0.893  CAG   YPP   7  
YPP  CAH   CAH   C  0  1  N  N  N   -6.002  -20.286  12.069  -6.240  -0.767   0.822  CAH   YPP   8  
YPP  SAI   SAI   S  0  1  N  N  N   -6.606  -19.534  13.557  -5.051  -2.071   0.310  SAI   YPP   9  
YPP  CAJ   CAJ   C  0  1  N  N  N   -3.913  -20.021  10.729  -5.872   1.493  -0.127  CAJ   YPP  10  
YPP  OAK   OAK   O  0  1  N  N  N   -2.739  -20.068  11.148  -5.255   1.671  -1.151  OAK   YPP  11  
YPP  OAL   OAL   O  0  1  N  N  N   -4.334  -20.512   9.659  -7.005   2.177   0.102  OAL   YPP  12  
YPP  CAM   CAM   C  0  1  N  N  N   -7.113  -20.412  11.027  -6.836  -1.089   2.193  CAM   YPP  13  
YPP  CAN   CAN   C  0  1  N  N  N   -5.382  -21.653  12.374  -7.345  -0.606  -0.224  CAN   YPP  14  
YPP  CAP   CAP   C  0  1  N  N  N   -7.516  -16.317  12.753  -0.129  -0.562  -0.168  CAP   YPP  15  
YPP  OAQ   OAQ   O  0  1  N  N  N   -8.310  -16.599  13.648   0.194  -1.473   0.565  OAQ   YPP  16  
YPP  CAR   CAR   C  0  1  N  N  R   -8.008  -15.705  11.441   0.886   0.477  -0.570  CAR   YPP  17  
YPP  CAS   CAS   C  0  1  Y  N  N   -8.039  -16.748  10.313   0.422   1.836  -0.112  CAS   YPP  18  
YPP  CAT   CAT   C  0  1  Y  N  N   -7.097  -16.690   9.291  -0.183   2.698  -1.007  CAT   YPP  19  
YPP  CAU   CAU   C  0  1  Y  N  N   -7.131  -17.619   8.257  -0.608   3.944  -0.586  CAU   YPP  20  
YPP  CAV   CAV   C  0  1  Y  N  N   -8.113  -18.603   8.237  -0.429   4.328   0.730  CAV   YPP  21  
YPP  CAW   CAW   C  0  1  Y  N  N   -9.067  -18.653   9.249   0.175   3.465   1.625  CAW   YPP  22  
YPP  CAX   CAX   C  0  1  Y  N  N   -9.031  -17.723  10.285   0.597   2.217   1.206  CAX   YPP  23  
YPP  NAY   NAY   N  0  1  N  N  N   -9.359  -15.137  11.622   2.176   0.166   0.051  NAY   YPP  24  
YPP  CAZ   CAZ   C  0  1  N  N  N   -9.839  -14.242  10.768   3.319   0.604  -0.514  CAZ   YPP  25  
YPP  OBA   OBA   O  0  1  N  N  N   -9.186  -13.843   9.804   3.276   1.330  -1.487  OBA   YPP  26  
YPP  NBB   NBB   N  0  1  N  N  N  -11.068  -13.737  10.929   4.509   0.236   0.001  NBB   YPP  27  
YPP  CBC   CBC   C  0  1  N  N  N  -11.463  -12.577  10.090   4.559  -0.548   1.235  CBC   YPP  28  
YPP  CBD   CBD   C  0  1  N  N  N  -12.409  -11.669  10.866   5.684  -1.577   1.170  CBD   YPP  29  
YPP  NBE   NBE   N  0  1  N  N  N  -13.525  -12.475  11.400   6.944  -0.937   0.793  NBE   YPP  30  
YPP  CBF   CBF   C  0  1  N  N  N  -13.263  -13.715  11.981   6.953   0.061  -0.114  CBF   YPP  31  
YPP  OBG   OBG   O  0  1  N  N  N  -14.146  -14.289  12.622   8.002   0.522  -0.511  OBG   YPP  32  
YPP  CBH   CBH   C  0  1  N  N  N  -12.006  -14.302  11.831   5.649   0.586  -0.626  CBH   YPP  33  
YPP  OBI   OBI   O  0  1  N  N  N  -11.730  -15.316  12.471   5.620   1.322  -1.591  OBI   YPP  34  
YPP  CBJ   CBJ   C  0  1  N  N  N  -14.912  -11.968  11.331   8.200  -1.380   1.403  CBJ   YPP  35  
YPP  CBK   CBK   C  0  1  N  N  N  -15.191  -11.012  12.493   8.811  -2.499   0.556  CBK   YPP  36  
YPP  OXT   OXT   O  0  1  N  N  N   -3.985  -15.281  13.706  -2.661  -3.891  -0.733  OXT   YPP  37  
YPP  HN    HN    H  0  1  N  N  N   -5.605  -16.222  12.086  -1.653   0.249  -1.209  HN    YPP  38  
YPP  HA    HA    H  0  1  N  N  N   -6.347  -16.946  14.873  -2.187  -1.810   0.792  HA    YPP  39  
YPP  HB    HB    H  0  1  N  N  N   -4.744  -18.750  14.914  -4.014  -0.580  -1.341  HB    YPP  40  
YPP  HNAE  HNAE  H  0  0  N  N  N   -3.838  -17.802  12.529  -3.456   0.058   1.496  HNAE  YPP  41  
YPP  HAG   HAG   H  0  1  N  N  N   -5.422  -18.502  11.040  -5.472   0.943   1.885  HAG   YPP  42  
YPP  HAM   HAM   H  0  1  N  N  N   -7.870  -21.126  11.382  -7.455  -0.256   2.525  HAM   YPP  43  
YPP  HAMA  HAMA  H  0  0  N  N  N   -7.581  -19.429  10.870  -7.446  -1.990   2.122  HAMA  YPP  44  
YPP  HAMB  HAMB  H  0  0  N  N  N   -6.687  -20.771  10.079  -6.031  -1.252   2.910  HAMB  YPP  45  
YPP  HAN   HAN   H  0  1  N  N  N   -6.169  -22.348  12.702  -6.897  -0.429  -1.202  HAN   YPP  46  
YPP  HANA  HANA  H  0  0  N  N  N   -4.899  -22.047  11.467  -7.948  -1.513  -0.258  HANA  YPP  47  
YPP  HANB  HANB  H  0  0  N  N  N   -4.632  -21.546  13.172  -7.978   0.240   0.044  HANB  YPP  48  
YPP  HAR   HAR   H  0  1  N  N  N   -7.304  -14.908  11.158   0.995   0.477  -1.655  HAR   YPP  49  
YPP  HAT   HAT   H  0  1  N  N  N   -6.338  -15.922   9.301  -0.323   2.398  -2.035  HAT   YPP  50  
YPP  HAU   HAU   H  0  1  N  N  N   -6.394  -17.576   7.469  -1.080   4.618  -1.286  HAU   YPP  51  
YPP  HAV   HAV   H  0  1  N  N  N   -8.135  -19.328   7.437  -0.760   5.302   1.058  HAV   YPP  52  
YPP  HAW   HAW   H  0  1  N  N  N   -9.835  -19.412   9.231   0.316   3.765   2.653  HAW   YPP  53  
YPP  HAX   HAX   H  0  1  N  N  N   -9.774  -17.759  11.068   1.065   1.542   1.906  HAX   YPP  54  
YPP  HNAY  HNAY  H  0  0  N  N  N   -9.919  -15.430  12.397   2.207  -0.355   0.868  HNAY  YPP  55  
YPP  HBC   HBC   H  0  1  N  N  N  -10.564  -12.009   9.809   4.731   0.121   2.079  HBC   YPP  56  
YPP  HBCA  HBCA  H  0  0  N  N  N  -11.970  -12.940   9.184   3.608  -1.063   1.373  HBCA  YPP  57  
YPP  HBD   HBD   H  0  1  N  N  N  -11.866  -11.195  11.697   5.798  -2.047   2.147  HBD   YPP  58  
YPP  HBDA  HBDA  H  0  0  N  N  N  -12.804  -10.890  10.197   5.432  -2.339   0.432  HBDA  YPP  59  
YPP  HBJ   HBJ   H  0  1  N  N  N  -15.053  -11.432  10.381   8.896  -0.543   1.453  HBJ   YPP  60  
YPP  HBJA  HBJA  H  0  0  N  N  N  -15.609  -12.817  11.387   8.005  -1.751   2.409  HBJA  YPP  61  
YPP  HBK   HBK   H  0  1  N  N  N  -16.226  -10.645  12.426   9.006  -2.128  -0.450  HBK   YPP  62  
YPP  HBKA  HBKA  H  0  0  N  N  N  -15.051  -11.543  13.446   9.745  -2.829   1.010  HBKA  YPP  63  
YPP  HBKB  HBKB  H  0  0  N  N  N  -14.496  -10.161  12.442   8.116  -3.337   0.506  HBKB  YPP  64  
YPP  HAL   HAL   H  0  1  N  N  N   -3.617  -20.935   9.201  -7.287   2.800  -0.581  HAL   YPP  65  
YPP  HXT   HXT   H  0  1  N  N  N   -3.232  -14.832  14.072  -2.582  -4.620  -1.364  HXT   YPP  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YPP  C    O     DOUB  N  N   1  
YPP  C    CA    SING  N  N   2  
YPP  C    OXT   SING  N  N   3  
YPP  N    CA    SING  N  N   4  
YPP  N    CAP   SING  N  N   5  
YPP  CA   CB    SING  N  N   6  
YPP  CB   NAE   SING  N  N   7  
YPP  CB   SAI   SING  N  N   8  
YPP  NAE  CAG   SING  N  N   9  
YPP  CAG  CAH   SING  N  N  10  
YPP  CAG  CAJ   SING  N  N  11  
YPP  CAH  SAI   SING  N  N  12  
YPP  CAH  CAM   SING  N  N  13  
YPP  CAH  CAN   SING  N  N  14  
YPP  CAJ  OAK   DOUB  N  N  15  
YPP  CAJ  OAL   SING  N  N  16  
YPP  CAP  OAQ   DOUB  N  N  17  
YPP  CAP  CAR   SING  N  N  18  
YPP  CAR  CAS   SING  N  N  19  
YPP  CAR  NAY   SING  N  N  20  
YPP  CAS  CAT   DOUB  Y  N  21  
YPP  CAS  CAX   SING  Y  N  22  
YPP  CAT  CAU   SING  Y  N  23  
YPP  CAU  CAV   DOUB  Y  N  24  
YPP  CAV  CAW   SING  Y  N  25  
YPP  CAW  CAX   DOUB  Y  N  26  
YPP  NAY  CAZ   SING  N  N  27  
YPP  CAZ  OBA   DOUB  N  N  28  
YPP  CAZ  NBB   SING  N  N  29  
YPP  NBB  CBC   SING  N  N  30  
YPP  NBB  CBH   SING  N  N  31  
YPP  CBC  CBD   SING  N  N  32  
YPP  CBD  NBE   SING  N  N  33  
YPP  NBE  CBF   SING  N  N  34  
YPP  NBE  CBJ   SING  N  N  35  
YPP  CBF  OBG   DOUB  N  N  36  
YPP  CBF  CBH   SING  N  N  37  
YPP  CBH  OBI   DOUB  N  N  38  
YPP  CBJ  CBK   SING  N  N  39  
YPP  N    HN    SING  N  N  40  
YPP  CA   HA    SING  N  N  41  
YPP  CB   HB    SING  N  N  42  
YPP  NAE  HNAE  SING  N  N  43  
YPP  CAG  HAG   SING  N  N  44  
YPP  CAM  HAM   SING  N  N  45  
YPP  CAM  HAMA  SING  N  N  46  
YPP  CAM  HAMB  SING  N  N  47  
YPP  CAN  HAN   SING  N  N  48  
YPP  CAN  HANA  SING  N  N  49  
YPP  CAN  HANB  SING  N  N  50  
YPP  CAR  HAR   SING  N  N  51  
YPP  CAT  HAT   SING  N  N  52  
YPP  CAU  HAU   SING  N  N  53  
YPP  CAV  HAV   SING  N  N  54  
YPP  CAW  HAW   SING  N  N  55  
YPP  CAX  HAX   SING  N  N  56  
YPP  NAY  HNAY  SING  N  N  57  
YPP  CBC  HBC   SING  N  N  58  
YPP  CBC  HBCA  SING  N  N  59  
YPP  CBD  HBD   SING  N  N  60  
YPP  CBD  HBDA  SING  N  N  61  
YPP  CBJ  HBJ   SING  N  N  62  
YPP  CBJ  HBJA  SING  N  N  63  
YPP  CBK  HBK   SING  N  N  64  
YPP  CBK  HBKA  SING  N  N  65  
YPP  CBK  HBKB  SING  N  N  66  
YPP  OAL  HAL   SING  N  N  67  
YPP  OXT  HXT   SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YPP  SMILES            ACDLabs               12.01  "O=C(NC(C(=O)O)C1SC(C(N1)C(=O)O)(C)C)C(c2ccccc2)NC(=O)N3C(=O)C(=O)N(CC)CC3"  
YPP  SMILES_CANONICAL  CACTVS                3.370  "CCN1CCN(C(=O)N[C@@H](C(=O)N[C@@H]([C@@H]2N[C@@H](C(O)=O)C(C)(C)S2)C(O)=O)c3ccccc3)C(=O)C1=O"  
YPP  SMILES            CACTVS                3.370  "CCN1CCN(C(=O)N[CH](C(=O)N[CH]([CH]2N[CH](C(O)=O)C(C)(C)S2)C(O)=O)c3ccccc3)C(=O)C1=O"  
YPP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CCN1CCN(C(=O)C1=O)C(=O)N[C@H](c2ccccc2)C(=O)N[C@@H]([C@@H]3N[C@H](C(S3)(C)C)C(=O)O)C(=O)O"  
YPP  SMILES            "OpenEye OEToolkits"  1.7.0  "CCN1CCN(C(=O)C1=O)C(=O)NC(c2ccccc2)C(=O)NC(C3NC(C(S3)(C)C)C(=O)O)C(=O)O"  
YPP  InChI             InChI                 1.03   "InChI=1S/C23H29N5O8S/c1-4-27-10-11-28(19(31)18(27)30)22(36)25-13(12-8-6-5-7-9-12)16(29)24-14(20(32)33)17-26-15(21(34)35)23(2,3)37-17/h5-9,13-15,17,26H,4,10-11H2,1-3H3,(H,24,29)(H,25,36)(H,32,33)(H,34,35)/t13-,14+,15+,17-/m1/s1"  
YPP  InChIKey          InChI                 1.03   OKSUEATVFIVTFV-WBTNSWJXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YPP  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid"  
YPP  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "(2R,4S)-2-[(1R)-1-[[(2R)-2-[(4-ethyl-2,3-dioxo-piperazin-1-yl)carbonylamino]-2-phenyl-ethanoyl]amino]-2-hydroxy-2-oxo-ethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YPP  "Create component"      2011-01-06  PDBJ  
YPP  "Modify aromatic_flag"  2011-06-04  RCSB  
YPP  "Modify descriptor"     2011-06-04  RCSB  
YPP  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     YPP
_pdbx_chem_comp_synonyms.name        "(2R,4S)-2-[(R)-carboxy{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}methyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
