data_05I # _chem_comp.id 05I _chem_comp.name "4-[(1~{S},5~{R})-3,8-diazabicyclo[3.2.1]octan-3-yl]-7-(8-methylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H38 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-01 _chem_comp.pdbx_modified_date 2021-12-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.662 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 05I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EWB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 05I C4 C1 C 0 1 Y N N -2.966 -12.412 11.556 -0.047 0.162 0.644 C4 05I 1 05I C5 C2 C 0 1 Y N N -2.867 -13.054 10.324 0.064 -1.166 0.979 C5 05I 2 05I C6 C3 C 0 1 Y N N -1.952 -12.501 9.390 -1.081 -1.968 0.932 C6 05I 3 05I N1 N1 N 0 1 Y N N -1.245 -11.395 9.718 -2.235 -1.422 0.562 N1 05I 4 05I N3 N2 N 0 1 Y N N -2.232 -11.336 11.810 -1.233 0.640 0.282 N3 05I 5 05I C2 C4 C 0 1 Y N N -1.380 -10.830 10.917 -2.300 -0.140 0.244 C2 05I 6 05I CAH C5 C 0 1 N N N -3.647 -14.210 10.061 1.376 -1.778 1.388 CAH 05I 7 05I CAI C6 C 0 1 N N N -4.900 -14.384 10.920 2.368 -0.676 1.764 CAI 05I 8 05I CAK C7 C 0 1 N N N -3.806 -12.814 12.588 1.136 1.092 0.681 CAK 05I 9 05I CAM C8 C 0 1 N N N 0.198 -9.215 10.298 -3.507 1.777 -0.465 CAM 05I 10 05I CAN C9 C 0 1 N N N -1.311 -11.996 7.116 -2.130 -4.058 0.670 CAN 05I 11 05I CAO C10 C 0 1 N N R -0.002 -12.420 6.475 -1.939 -4.112 -0.855 CAO 05I 12 05I CAQ C11 C 0 1 N N S -0.165 -14.619 7.158 0.375 -3.944 -0.649 CAQ 05I 13 05I CAR C12 C 0 1 N N N -1.501 -14.412 7.804 0.286 -3.883 0.885 CAR 05I 14 05I CAS C13 C 0 1 Y N N -5.310 -14.443 13.376 3.489 1.169 0.809 CAS 05I 15 05I CAT C14 C 0 1 Y N N -6.606 -13.938 13.383 3.655 1.936 1.942 CAT 05I 16 05I CAU C15 C 0 1 Y N N -7.493 -14.188 14.416 4.755 2.779 2.077 CAU 05I 17 05I CAV C16 C 0 1 Y N N -7.047 -14.940 15.481 5.695 2.870 1.096 CAV 05I 18 05I CAW C17 C 0 1 Y N N -5.753 -15.437 15.521 5.564 2.105 -0.075 CAW 05I 19 05I CAX C18 C 0 1 Y N N -4.831 -15.196 14.483 4.449 1.243 -0.224 CAX 05I 20 05I CAY C19 C 0 1 Y N N -5.420 -16.186 16.641 6.518 2.178 -1.104 CAY 05I 21 05I CAZ C20 C 0 1 Y N N -4.151 -16.719 16.776 6.360 1.423 -2.226 CAZ 05I 22 05I CBA C21 C 0 1 Y N N -3.222 -16.494 15.774 5.264 0.576 -2.371 CBA 05I 23 05I CBB C22 C 0 1 Y N N -3.539 -15.758 14.636 4.319 0.480 -1.395 CBB 05I 24 05I CBC C23 C 0 1 N N N -2.480 -15.648 13.731 3.139 -0.441 -1.571 CBC 05I 25 05I CBD C24 C 0 1 N N S 0.708 -7.877 10.818 -4.926 2.189 -0.862 CBD 05I 26 05I CBF C25 C 0 1 N N N -0.334 -6.932 12.688 -6.360 3.439 0.598 CBF 05I 27 05I CBG C26 C 0 1 N N N 1.163 -6.910 12.926 -6.270 4.201 -0.748 CBG 05I 28 05I CBH C27 C 0 1 N N N 1.498 -8.124 12.116 -4.936 3.661 -1.326 CBH 05I 29 05I CBI C28 C 0 1 N N N -0.094 -5.629 10.709 -6.905 1.133 0.062 CBI 05I 30 05I CBJ C29 C 0 1 N N N 0.910 -14.024 8.071 -0.071 -2.569 -1.199 CBJ 05I 31 05I CBK C30 C 0 1 N N N 1.076 -12.565 7.539 -1.604 -2.680 -1.336 CBK 05I 32 05I NAG N3 N 0 1 N N N -1.685 -12.973 8.156 -1.014 -3.311 1.265 NAG 05I 33 05I NAJ N4 N 0 1 N N N -4.624 -14.011 12.313 2.388 0.325 0.686 NAJ 05I 34 05I NAP N5 N 0 1 N N N -0.033 -13.796 5.940 -0.688 -4.878 -1.108 NAP 05I 35 05I NBE N6 N 0 1 N N N -0.400 -6.980 11.208 -5.820 2.093 0.306 NBE 05I 36 05I OAL O1 O 0 1 N N N -0.679 -9.733 11.294 -3.489 0.388 -0.132 OAL 05I 37 05I H1 H1 H 0 1 N N N -3.964 -14.170 9.008 1.219 -2.432 2.245 H1 05I 38 05I H2 H2 H 0 1 N N N -3.007 -15.091 10.218 1.778 -2.360 0.558 H2 05I 39 05I H3 H3 H 0 1 N N N -5.701 -13.742 10.525 2.056 -0.205 2.696 H3 05I 40 05I H4 H4 H 0 1 N N N -5.221 -15.436 10.884 3.363 -1.105 1.884 H4 05I 41 05I H5 H5 H 0 1 N N N -3.183 -13.025 13.469 1.114 1.738 -0.196 H5 05I 42 05I H6 H6 H 0 1 N N N -4.489 -11.981 12.813 1.086 1.704 1.581 H6 05I 43 05I H7 H7 H 0 1 N N N -0.345 -9.072 9.352 -2.829 1.959 -1.300 H7 05I 44 05I H8 H8 H 0 1 N N N 1.039 -9.905 10.138 -3.186 2.362 0.397 H8 05I 45 05I H9 H9 H 0 1 N N N -1.192 -11.002 7.572 -3.070 -3.557 0.902 H9 05I 46 05I H10 H10 H 0 1 N N N -2.099 -11.956 6.350 -2.148 -5.070 1.073 H10 05I 47 05I H11 H11 H 0 1 N N N 0.307 -11.698 5.705 -2.806 -4.530 -1.367 H11 05I 48 05I H12 H12 H 0 1 N N N 0.028 -15.683 6.959 1.370 -4.227 -0.994 H12 05I 49 05I H13 H13 H 0 1 N N N -2.294 -14.720 7.106 0.376 -4.888 1.297 H13 05I 50 05I H14 H14 H 0 1 N N N -1.561 -15.020 8.718 1.088 -3.255 1.273 H14 05I 51 05I H15 H15 H 0 1 N N N -6.932 -13.329 12.553 2.923 1.883 2.734 H15 05I 52 05I H16 H16 H 0 1 N N N -8.503 -13.806 14.388 4.864 3.371 2.974 H16 05I 53 05I H17 H17 H 0 1 N N N -7.719 -15.147 16.301 6.541 3.530 1.219 H17 05I 54 05I H18 H18 H 0 1 N N N -6.157 -16.354 17.412 7.373 2.831 -1.005 H18 05I 55 05I H19 H19 H 0 1 N N N -3.889 -17.301 17.648 7.095 1.482 -3.015 H19 05I 56 05I H20 H20 H 0 1 N N N -2.227 -16.900 15.878 5.161 -0.012 -3.270 H20 05I 57 05I H21 H21 H 0 1 N N N -1.886 -14.753 13.968 2.282 0.130 -1.928 H21 05I 58 05I H22 H22 H 0 1 N N N -1.842 -16.541 13.803 3.388 -1.216 -2.296 H22 05I 59 05I H23 H23 H 0 1 N N N -2.878 -15.563 12.709 2.894 -0.904 -0.615 H23 05I 60 05I H24 H24 H 0 1 N N N 1.355 -7.399 10.068 -5.290 1.543 -1.661 H24 05I 61 05I H25 H25 H 0 1 N N N -0.816 -6.025 13.082 -5.754 3.935 1.356 H25 05I 62 05I H26 H26 H 0 1 N N N -0.799 -7.821 13.140 -7.397 3.371 0.927 H26 05I 63 05I H27 H27 H 0 1 N N N 1.421 -7.029 13.989 -7.108 3.946 -1.398 H27 05I 64 05I H28 H28 H 0 1 N N N 1.638 -5.999 12.533 -6.219 5.277 -0.585 H28 05I 65 05I H29 H29 H 0 1 N N N 1.163 -9.043 12.618 -4.087 4.202 -0.907 H29 05I 66 05I H30 H30 H 0 1 N N N 2.578 -8.187 11.919 -4.933 3.722 -2.414 H30 05I 67 05I H31 H31 H 0 1 N N N -0.906 -4.942 10.988 -6.480 0.148 -0.135 H31 05I 68 05I H32 H32 H 0 1 N N N 0.850 -5.280 11.153 -7.549 1.082 0.939 H32 05I 69 05I H33 H33 H 0 1 N N N 0.003 -5.656 9.614 -7.489 1.456 -0.800 H33 05I 70 05I H34 H34 H 0 1 N N N 0.579 -14.024 9.120 0.191 -1.776 -0.499 H34 05I 71 05I H35 H35 H 0 1 N N N 1.853 -14.584 7.984 0.386 -2.382 -2.171 H35 05I 72 05I H36 H36 H 0 1 N N N 2.075 -12.422 7.102 -1.903 -2.549 -2.376 H36 05I 73 05I H37 H37 H 0 1 N N N 0.923 -11.837 8.349 -2.096 -1.942 -0.703 H37 05I 74 05I H38 H38 H 0 1 N N N -0.815 -13.928 5.330 -0.674 -5.734 -0.573 H38 05I 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 05I NAP CAO SING N N 1 05I NAP CAQ SING N N 2 05I CAO CAN SING N N 3 05I CAO CBK SING N N 4 05I CAN NAG SING N N 5 05I CAQ CAR SING N N 6 05I CAQ CBJ SING N N 7 05I CBK CBJ SING N N 8 05I CAR NAG SING N N 9 05I NAG C6 SING N N 10 05I C6 N1 DOUB Y N 11 05I C6 C5 SING Y N 12 05I N1 C2 SING Y N 13 05I CAH C5 SING N N 14 05I CAH CAI SING N N 15 05I CAM CBD SING N N 16 05I CAM OAL SING N N 17 05I C5 C4 DOUB Y N 18 05I CBI NBE SING N N 19 05I CBD NBE SING N N 20 05I CBD CBH SING N N 21 05I C2 OAL SING N N 22 05I C2 N3 DOUB Y N 23 05I CAI NAJ SING N N 24 05I NBE CBF SING N N 25 05I C4 N3 SING Y N 26 05I C4 CAK SING N N 27 05I CBH CBG SING N N 28 05I NAJ CAK SING N N 29 05I NAJ CAS SING N N 30 05I CBF CBG SING N N 31 05I CAS CAT DOUB Y N 32 05I CAS CAX SING Y N 33 05I CAT CAU SING Y N 34 05I CBC CBB SING N N 35 05I CAU CAV DOUB Y N 36 05I CAX CBB DOUB Y N 37 05I CAX CAW SING Y N 38 05I CBB CBA SING Y N 39 05I CAV CAW SING Y N 40 05I CAW CAY DOUB Y N 41 05I CBA CAZ DOUB Y N 42 05I CAY CAZ SING Y N 43 05I CAH H1 SING N N 44 05I CAH H2 SING N N 45 05I CAI H3 SING N N 46 05I CAI H4 SING N N 47 05I CAK H5 SING N N 48 05I CAK H6 SING N N 49 05I CAM H7 SING N N 50 05I CAM H8 SING N N 51 05I CAN H9 SING N N 52 05I CAN H10 SING N N 53 05I CAO H11 SING N N 54 05I CAQ H12 SING N N 55 05I CAR H13 SING N N 56 05I CAR H14 SING N N 57 05I CAT H15 SING N N 58 05I CAU H16 SING N N 59 05I CAV H17 SING N N 60 05I CAY H18 SING N N 61 05I CAZ H19 SING N N 62 05I CBA H20 SING N N 63 05I CBC H21 SING N N 64 05I CBC H22 SING N N 65 05I CBC H23 SING N N 66 05I CBD H24 SING N N 67 05I CBF H25 SING N N 68 05I CBF H26 SING N N 69 05I CBG H27 SING N N 70 05I CBG H28 SING N N 71 05I CBH H29 SING N N 72 05I CBH H30 SING N N 73 05I CBI H31 SING N N 74 05I CBI H32 SING N N 75 05I CBI H33 SING N N 76 05I CBJ H34 SING N N 77 05I CBJ H35 SING N N 78 05I CBK H36 SING N N 79 05I CBK H37 SING N N 80 05I NAP H38 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 05I InChI InChI 1.03 "InChI=1S/C30H38N6O/c1-20-6-3-7-21-8-4-10-27(28(20)21)35-15-13-25-26(18-35)32-30(37-19-24-9-5-14-34(24)2)33-29(25)36-16-22-11-12-23(17-36)31-22/h3-4,6-8,10,22-24,31H,5,9,11-19H2,1-2H3/t22-,23+,24-/m0/s1" 05I InChIKey InChI 1.03 KIWVGCSJQTTZJO-VXNXHJTFSA-N 05I SMILES_CANONICAL CACTVS 3.385 "CN1CCC[C@H]1COc2nc3CN(CCc3c(n2)N4C[C@@H]5CC[C@H](C4)N5)c6cccc7cccc(C)c67" 05I SMILES CACTVS 3.385 "CN1CCC[CH]1COc2nc3CN(CCc3c(n2)N4C[CH]5CC[CH](C4)N5)c6cccc7cccc(C)c67" 05I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5C[C@H]6CC[C@@H](C5)N6)OC[C@@H]7CCCN7C)C3" 05I SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5CC6CCC(C5)N6)OCC7CCCN7C)C3" # _pdbx_chem_comp_identifier.comp_id 05I _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(1~{S},5~{R})-3,8-diazabicyclo[3.2.1]octan-3-yl]-7-(8-methylnaphthalen-1-yl)-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 05I "Create component" 2021-06-01 PDBJ 05I "Initial release" 2021-12-29 RCSB ##