data_05M # _chem_comp.id 05M _chem_comp.name "2,3-dimethoxy-5-methyl-6-[10-(triphenyl-$l^{5}-phosphanyl)decyl]cyclohexa-2,5-diene-1,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H45 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-02 _chem_comp.pdbx_modified_date 2021-12-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 584.725 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 05M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EXP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 05M C10 C1 C 0 1 N N N -107.569 -20.511 110.777 7.346 2.551 1.207 C10 05M 1 05M C13 C2 C 0 1 N N N -109.251 -24.107 112.125 4.931 0.095 0.416 C13 05M 2 05M C21 C3 C 0 1 N N N -107.545 -32.876 109.542 -4.981 -0.053 -0.848 C21 05M 3 05M C24 C4 C 0 1 Y N N -104.906 -33.724 108.293 -6.039 1.490 1.021 C24 05M 4 05M C26 C5 C 0 1 Y N N -105.580 -34.705 107.557 -5.045 2.307 0.515 C26 05M 5 05M C28 C6 C 0 1 Y N N -103.473 -35.814 107.111 -5.176 3.679 2.473 C28 05M 6 05M C01 C7 C 0 1 N N N -110.453 -21.316 113.083 8.025 -1.082 0.183 C01 05M 7 05M C02 C8 C 0 1 N N N -111.110 -20.079 113.160 9.323 -0.981 -0.512 C02 05M 8 05M C03 C9 C 0 1 N N N -110.642 -18.951 112.470 9.932 0.221 -0.631 C03 05M 9 05M C04 C10 C 0 1 N N N -109.484 -19.066 111.691 9.295 1.427 -0.065 C04 05M 10 05M C05 C11 C 0 1 N N N -108.828 -20.313 111.614 7.995 1.319 0.630 C05 05M 11 05M C06 C12 C 0 1 N N N -109.301 -21.442 112.295 7.389 0.130 0.742 C06 05M 12 05M C12 C13 C 0 1 N N N -108.485 -22.759 112.141 6.061 0.027 1.446 C12 05M 13 05M C14 C14 C 0 1 N N N -109.533 -24.641 110.704 3.582 -0.010 1.130 C14 05M 14 05M C23 C15 C 0 1 Y N N -105.184 -31.192 110.373 -6.349 -1.717 0.687 C23 05M 15 05M C25 C16 C 0 1 Y N N -105.865 -31.222 107.563 -7.496 0.268 -1.602 C25 05M 16 05M C27 C17 C 0 1 Y N N -104.864 -35.758 106.973 -4.613 3.401 1.241 C27 05M 17 05M C29 C18 C 0 1 Y N N -102.800 -34.823 107.831 -6.166 2.859 2.981 C29 05M 18 05M C30 C19 C 0 1 Y N N -103.513 -33.773 108.415 -6.602 1.768 2.252 C30 05M 19 05M C31 C20 C 0 1 Y N N -106.991 -31.083 106.756 -8.871 0.405 -1.641 C31 05M 20 05M C32 C21 C 0 1 Y N N -106.920 -30.240 105.642 -9.512 0.593 -2.851 C32 05M 21 05M C33 C22 C 0 1 Y N N -105.735 -29.558 105.343 -8.779 0.643 -4.022 C33 05M 22 05M C34 C23 C 0 1 Y N N -104.609 -29.707 106.150 -7.404 0.507 -3.982 C34 05M 23 05M C35 C24 C 0 1 Y N N -104.681 -30.546 107.254 -6.762 0.325 -2.772 C35 05M 24 05M C36 C25 C 0 1 Y N N -106.033 -30.718 111.377 -7.283 -2.300 1.521 C36 05M 25 05M C37 C26 C 0 1 Y N N -105.540 -29.859 112.369 -7.080 -3.581 1.998 C37 05M 26 05M C38 C27 C 0 1 Y N N -104.198 -29.465 112.348 -5.942 -4.279 1.640 C38 05M 27 05M C39 C28 C 0 1 Y N N -103.348 -29.929 111.341 -5.007 -3.696 0.806 C39 05M 28 05M C40 C29 C 0 1 Y N N -103.841 -30.788 110.357 -5.210 -2.414 0.329 C40 05M 29 05M C41 C30 C 0 1 N N N -111.980 -19.575 115.295 10.341 -3.089 -0.104 C41 05M 30 05M C42 C31 C 0 1 N N N -111.825 -17.101 111.407 11.151 1.061 -2.490 C42 05M 31 05M O07 O1 O 0 1 N N N -112.268 -19.976 113.962 9.905 -2.093 -1.031 O07 05M 32 05M O08 O2 O 0 1 N N N -111.339 -17.712 112.597 11.126 0.319 -1.269 O08 05M 33 05M O09 O3 O 0 1 N N N -109.064 -18.089 111.090 9.840 2.507 -0.170 O09 05M 34 05M O11 O4 O 0 1 N N N -110.913 -22.254 113.705 7.476 -2.161 0.291 O11 05M 35 05M P22 P1 P 0 1 N N N -105.845 -32.316 109.045 -6.628 0.014 0.035 P22 05M 36 05M H1 H1 H 0 1 N N N -107.231 -21.554 110.863 7.978 3.418 1.015 H1 05M 37 05M H2 H2 H 0 1 N N N -107.789 -20.283 109.724 6.372 2.701 0.741 H2 05M 38 05M H3 H3 H 0 1 N N N -106.778 -19.838 111.140 7.219 2.424 2.282 H3 05M 39 05M H4 H4 H 0 1 N N N -110.212 -23.967 112.641 4.986 1.042 -0.121 H4 05M 40 05M H5 H5 H 0 1 N N N -108.651 -24.854 112.665 5.034 -0.729 -0.291 H5 05M 41 05M H6 H6 H 0 1 N N N -107.781 -33.894 109.886 -4.946 -0.937 -1.485 H6 05M 42 05M H7 H7 H 0 1 N N N -108.358 -32.193 109.831 -4.861 0.841 -1.461 H7 05M 43 05M H9 H9 H 0 1 N N N -106.652 -34.650 107.439 -4.605 2.090 -0.447 H9 05M 44 05M H10 H10 H 0 1 N N N -102.919 -36.624 106.661 -4.836 4.531 3.042 H10 05M 45 05M H11 H11 H 0 1 N N N -107.773 -22.800 112.979 5.958 0.850 2.152 H11 05M 46 05M H12 H12 H 0 1 N N N -107.931 -22.689 111.193 6.006 -0.921 1.982 H12 05M 47 05M H13 H13 H 0 1 N N N -109.679 -25.728 110.785 3.528 -0.958 1.666 H13 05M 48 05M H14 H14 H 0 1 N N N -110.464 -24.171 110.355 3.480 0.813 1.836 H14 05M 49 05M H16 H16 H 0 1 N N N -105.384 -36.524 106.418 -3.836 4.039 0.846 H16 05M 50 05M H17 H17 H 0 1 N N N -101.726 -34.869 107.936 -6.600 3.071 3.947 H17 05M 51 05M H18 H18 H 0 1 N N N -102.990 -33.001 108.960 -7.382 1.133 2.645 H18 05M 52 05M H19 H19 H 0 1 N N N -107.902 -31.616 106.986 -9.444 0.365 -0.726 H19 05M 53 05M H20 H20 H 0 1 N N N -107.786 -30.115 105.008 -10.587 0.699 -2.882 H20 05M 54 05M H21 H21 H 0 1 N N N -105.693 -28.911 104.479 -9.280 0.789 -4.967 H21 05M 55 05M H22 H22 H 0 1 N N N -103.695 -29.179 105.921 -6.831 0.546 -4.897 H22 05M 56 05M H23 H23 H 0 1 N N N -103.812 -30.678 107.881 -5.688 0.219 -2.741 H23 05M 57 05M H24 H24 H 0 1 N N N -107.071 -31.014 111.389 -8.172 -1.755 1.801 H24 05M 58 05M H25 H25 H 0 1 N N N -106.196 -29.502 113.149 -7.810 -4.037 2.651 H25 05M 59 05M H26 H26 H 0 1 N N N -103.819 -28.801 113.111 -5.782 -5.280 2.013 H26 05M 60 05M H27 H27 H 0 1 N N N -102.312 -29.624 111.324 -4.117 -4.241 0.526 H27 05M 61 05M H28 H28 H 0 1 N N N -103.183 -31.144 109.578 -4.480 -1.959 -0.323 H28 05M 62 05M H29 H29 H 0 1 N N N -112.916 -19.512 115.870 11.011 -2.637 0.627 H29 05M 63 05M H30 H30 H 0 1 N N N -111.311 -20.312 115.763 9.476 -3.512 0.409 H30 05M 64 05M H31 H31 H 0 1 N N N -111.490 -18.590 115.284 10.867 -3.879 -0.640 H31 05M 65 05M H32 H32 H 0 1 N N N -112.336 -16.160 111.660 12.139 0.983 -2.943 H32 05M 66 05M H33 H33 H 0 1 N N N -110.982 -16.890 110.733 10.405 0.658 -3.175 H33 05M 67 05M H34 H34 H 0 1 N N N -112.532 -17.780 110.909 10.926 2.107 -2.284 H34 05M 68 05M C1 C32 C 0 1 N N N ? ? ? 2.453 0.058 0.100 C1 05M 69 05M C2 C33 C 0 1 N N N ? ? ? 1.104 -0.047 0.814 C2 05M 70 05M C3 C34 C 0 1 N N N ? ? ? -0.025 0.021 -0.216 C3 05M 71 05M C4 C35 C 0 1 N N N ? ? ? -1.374 -0.084 0.498 C4 05M 72 05M C5 C36 C 0 1 N N N ? ? ? -2.503 -0.016 -0.532 C5 05M 73 05M C6 C37 C 0 1 N N N ? ? ? -3.852 -0.121 0.182 C6 05M 74 05M H8 H8 H 0 1 N N N ? ? ? -7.922 0.067 0.730 H8 05M 75 05M H15 H15 H 0 1 N N N ? ? ? 2.508 1.005 -0.437 H15 05M 76 05M H35 H35 H 0 1 N N N ? ? ? 2.556 -0.766 -0.607 H35 05M 77 05M H36 H36 H 0 1 N N N ? ? ? 1.050 -0.995 1.350 H36 05M 78 05M H37 H37 H 0 1 N N N ? ? ? 1.002 0.776 1.520 H37 05M 79 05M H38 H38 H 0 1 N N N ? ? ? 0.030 0.968 -0.753 H38 05M 80 05M H39 H39 H 0 1 N N N ? ? ? 0.078 -0.803 -0.923 H39 05M 81 05M H40 H40 H 0 1 N N N ? ? ? -1.428 -1.032 1.034 H40 05M 82 05M H41 H41 H 0 1 N N N ? ? ? -1.476 0.739 1.204 H41 05M 83 05M H42 H42 H 0 1 N N N ? ? ? -2.449 0.931 -1.069 H42 05M 84 05M H43 H43 H 0 1 N N N ? ? ? -2.401 -0.840 -1.239 H43 05M 85 05M H44 H44 H 0 1 N N N ? ? ? -3.954 0.702 0.888 H44 05M 86 05M H45 H45 H 0 1 N N N ? ? ? -3.906 -1.069 0.718 H45 05M 87 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 05M C33 C32 DOUB Y N 1 05M C33 C34 SING Y N 2 05M C32 C31 SING Y N 3 05M C34 C35 DOUB Y N 4 05M C31 C25 DOUB Y N 5 05M C27 C28 DOUB Y N 6 05M C27 C26 SING Y N 7 05M C28 C29 SING Y N 8 05M C35 C25 SING Y N 9 05M C26 C24 DOUB Y N 10 05M C25 P22 SING N N 11 05M C29 C30 DOUB Y N 12 05M C24 C30 SING Y N 13 05M C24 P22 SING N N 14 05M P22 C21 SING N N 15 05M P22 C23 SING N N 16 05M C40 C23 DOUB Y N 17 05M C40 C39 SING Y N 18 05M C23 C36 SING Y N 19 05M C14 C13 SING N N 20 05M C10 C05 SING N N 21 05M O09 C04 DOUB N N 22 05M C39 C38 DOUB Y N 23 05M C36 C37 DOUB Y N 24 05M C42 O08 SING N N 25 05M C05 C04 SING N N 26 05M C05 C06 DOUB N N 27 05M C04 C03 SING N N 28 05M C13 C12 SING N N 29 05M C12 C06 SING N N 30 05M C06 C01 SING N N 31 05M C38 C37 SING Y N 32 05M C03 O08 SING N N 33 05M C03 C02 DOUB N N 34 05M C01 C02 SING N N 35 05M C01 O11 DOUB N N 36 05M C02 O07 SING N N 37 05M O07 C41 SING N N 38 05M C10 H1 SING N N 39 05M C10 H2 SING N N 40 05M C10 H3 SING N N 41 05M C13 H4 SING N N 42 05M C13 H5 SING N N 43 05M C21 H6 SING N N 44 05M C21 H7 SING N N 45 05M C26 H9 SING N N 46 05M C28 H10 SING N N 47 05M C12 H11 SING N N 48 05M C12 H12 SING N N 49 05M C14 H13 SING N N 50 05M C14 H14 SING N N 51 05M C27 H16 SING N N 52 05M C29 H17 SING N N 53 05M C30 H18 SING N N 54 05M C31 H19 SING N N 55 05M C32 H20 SING N N 56 05M C33 H21 SING N N 57 05M C34 H22 SING N N 58 05M C35 H23 SING N N 59 05M C36 H24 SING N N 60 05M C37 H25 SING N N 61 05M C38 H26 SING N N 62 05M C39 H27 SING N N 63 05M C40 H28 SING N N 64 05M C41 H29 SING N N 65 05M C41 H30 SING N N 66 05M C41 H31 SING N N 67 05M C42 H32 SING N N 68 05M C42 H33 SING N N 69 05M C42 H34 SING N N 70 05M C14 C1 SING N N 71 05M C1 C2 SING N N 72 05M C2 C3 SING N N 73 05M C3 C4 SING N N 74 05M C4 C5 SING N N 75 05M C5 C6 SING N N 76 05M C21 C6 SING N N 77 05M P22 H8 SING N N 78 05M C1 H15 SING N N 79 05M C1 H35 SING N N 80 05M C2 H36 SING N N 81 05M C2 H37 SING N N 82 05M C3 H38 SING N N 83 05M C3 H39 SING N N 84 05M C4 H40 SING N N 85 05M C4 H41 SING N N 86 05M C5 H42 SING N N 87 05M C5 H43 SING N N 88 05M C6 H44 SING N N 89 05M C6 H45 SING N N 90 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 05M InChI InChI 1.03 "InChI=1S/C37H45O4P/c1-29-33(35(39)37(41-3)36(40-2)34(29)38)27-19-8-6-4-5-7-9-20-28-42(30-21-13-10-14-22-30,31-23-15-11-16-24-31)32-25-17-12-18-26-32/h10-18,21-26,42H,4-9,19-20,27-28H2,1-3H3" 05M InChIKey InChI 1.03 BIPKQWZPPRRUAP-UHFFFAOYSA-N 05M SMILES_CANONICAL CACTVS 3.385 "COC1=C(OC)C(=O)C(=C(C)C1=O)CCCCCCCCCC[PH](c2ccccc2)(c3ccccc3)c4ccccc4" 05M SMILES CACTVS 3.385 "COC1=C(OC)C(=O)C(=C(C)C1=O)CCCCCCCCCC[PH](c2ccccc2)(c3ccccc3)c4ccccc4" 05M SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)C(=C(C1=O)OC)OC)CCCCCCCCCCP(c2ccccc2)(c3ccccc3)c4ccccc4" 05M SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)C(=C(C1=O)OC)OC)CCCCCCCCCCP(c2ccccc2)(c3ccccc3)c4ccccc4" # _pdbx_chem_comp_identifier.comp_id 05M _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2,3-dimethoxy-5-methyl-6-[10-(triphenyl-$l^{5}-phosphanyl)decyl]cyclohexa-2,5-diene-1,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 05M "Create component" 2021-06-02 PDBJ 05M "Initial release" 2022-01-05 RCSB ##