data_05Y # _chem_comp.id 05Y _chem_comp.name "~{N}-[1-(2-pyridin-2-ylethyl)benzimidazol-2-yl]propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H18 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-03 _chem_comp.pdbx_modified_date 2022-04-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 294.351 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 05Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OPR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 05Y C05 C1 C 0 1 N N N -4.300 0.542 9.389 3.548 -4.649 0.010 C05 05Y 1 05Y C06 C2 C 0 1 N N N -4.857 1.889 9.857 2.199 -3.966 -0.228 C06 05Y 2 05Y C07 C3 C 0 1 N N N -5.887 2.400 8.855 2.365 -2.472 -0.113 C07 05Y 3 05Y C09 C4 C 0 1 Y N N -4.350 4.232 7.963 1.455 -0.289 -0.180 C09 05Y 4 05Y C11 C5 C 0 1 Y N N -2.246 4.706 7.961 2.375 1.667 0.104 C11 05Y 5 05Y C12 C6 C 0 1 Y N N -0.844 4.743 7.948 3.211 2.763 0.330 C12 05Y 6 05Y C13 C7 C 0 1 Y N N -0.185 5.966 7.999 2.691 4.037 0.299 C13 05Y 7 05Y C14 C8 C 0 1 Y N N -0.906 7.155 8.067 1.343 4.242 0.045 C14 05Y 8 05Y C15 C9 C 0 1 Y N N -2.294 7.117 8.082 0.504 3.170 -0.181 C15 05Y 9 05Y C16 C10 C 0 1 Y N N -2.959 5.881 8.030 1.011 1.880 -0.154 C16 05Y 10 05Y C18 C11 C 0 1 N N N -5.326 6.544 8.094 -0.950 0.333 -0.636 C18 05Y 11 05Y C19 C12 C 0 1 N N N -5.891 6.959 6.737 -1.726 0.156 0.671 C19 05Y 12 05Y C20 C13 C 0 1 Y N N -6.856 5.886 6.245 -3.170 -0.144 0.361 C20 05Y 13 05Y C22 C14 C 0 1 Y N N -7.409 4.234 4.739 -5.124 0.461 -0.700 C22 05Y 14 05Y C23 C15 C 0 1 Y N N -8.586 3.986 5.426 -5.778 -0.657 -0.217 C23 05Y 15 05Y C24 C16 C 0 1 Y N N -8.907 4.707 6.572 -5.089 -1.546 0.593 C24 05Y 16 05Y C25 C17 C 0 1 Y N N -8.012 5.682 6.990 -3.759 -1.279 0.884 C25 05Y 17 05Y N08 N1 N 0 1 N N N -5.601 3.495 7.934 1.303 -1.661 -0.285 N08 05Y 18 05Y N10 N2 N 0 1 Y N N -3.138 3.703 7.915 2.582 0.324 0.077 N10 05Y 19 05Y N17 N3 N 0 1 Y N N -4.258 5.557 8.006 0.454 0.625 -0.335 N17 05Y 20 05Y N21 N4 N 0 1 Y N N -6.585 5.176 5.163 -3.858 0.682 -0.403 N21 05Y 21 05Y O26 O1 O 0 1 N N N -6.930 1.836 8.795 3.454 -2.001 0.134 O26 05Y 22 05Y H1 H1 H 0 1 N N N -3.558 0.179 10.116 3.911 -4.399 1.007 H1 05Y 23 05Y H2 H2 H 0 1 N N N -5.121 -0.186 9.308 3.428 -5.729 -0.073 H2 05Y 24 05Y H3 H3 H 0 1 N N N -3.821 0.665 8.406 4.265 -4.305 -0.735 H3 05Y 25 05Y H4 H4 H 0 1 N N N -4.035 2.615 9.938 1.836 -4.215 -1.225 H4 05Y 26 05Y H5 H5 H 0 1 N N N -5.335 1.765 10.840 1.482 -4.310 0.517 H5 05Y 27 05Y H6 H6 H 0 1 N N N -0.278 3.824 7.899 4.262 2.611 0.530 H6 05Y 28 05Y H7 H7 H 0 1 N N N 0.895 5.994 7.986 3.338 4.884 0.475 H7 05Y 29 05Y H8 H8 H 0 1 N N N -0.388 8.102 8.108 0.948 5.246 0.024 H8 05Y 30 05Y H9 H9 H 0 1 N N N -2.860 8.035 8.133 -0.544 3.336 -0.378 H9 05Y 31 05Y H10 H10 H 0 1 N N N -4.930 7.440 8.594 -1.013 -0.583 -1.223 H10 05Y 32 05Y H11 H11 H 0 1 N N N -6.143 6.119 8.695 -1.379 1.159 -1.204 H11 05Y 33 05Y H12 H12 H 0 1 N N N -5.069 7.073 6.015 -1.297 -0.669 1.239 H12 05Y 34 05Y H13 H13 H 0 1 N N N -6.425 7.915 6.838 -1.664 1.072 1.258 H13 05Y 35 05Y H14 H14 H 0 1 N N N -7.165 3.658 3.858 -5.655 1.160 -1.328 H14 05Y 36 05Y H15 H15 H 0 1 N N N -9.262 3.224 5.068 -6.814 -0.834 -0.465 H15 05Y 37 05Y H16 H16 H 0 1 N N N -9.820 4.515 7.117 -5.574 -2.428 0.985 H16 05Y 38 05Y H17 H17 H 0 1 N N N -8.209 6.269 7.875 -3.191 -1.950 1.512 H17 05Y 39 05Y H18 H18 H 0 1 N N N -6.293 3.748 7.257 0.431 -2.039 -0.483 H18 05Y 40 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 05Y C22 N21 DOUB Y N 1 05Y C22 C23 SING Y N 2 05Y N21 C20 SING Y N 3 05Y C23 C24 DOUB Y N 4 05Y C20 C19 SING N N 5 05Y C20 C25 DOUB Y N 6 05Y C24 C25 SING Y N 7 05Y C19 C18 SING N N 8 05Y N10 C11 SING Y N 9 05Y N10 C09 DOUB Y N 10 05Y N08 C09 SING N N 11 05Y N08 C07 SING N N 12 05Y C12 C11 DOUB Y N 13 05Y C12 C13 SING Y N 14 05Y C11 C16 SING Y N 15 05Y C09 N17 SING Y N 16 05Y C13 C14 DOUB Y N 17 05Y N17 C16 SING Y N 18 05Y N17 C18 SING N N 19 05Y C16 C15 DOUB Y N 20 05Y C14 C15 SING Y N 21 05Y O26 C07 DOUB N N 22 05Y C07 C06 SING N N 23 05Y C05 C06 SING N N 24 05Y C05 H1 SING N N 25 05Y C05 H2 SING N N 26 05Y C05 H3 SING N N 27 05Y C06 H4 SING N N 28 05Y C06 H5 SING N N 29 05Y C12 H6 SING N N 30 05Y C13 H7 SING N N 31 05Y C14 H8 SING N N 32 05Y C15 H9 SING N N 33 05Y C18 H10 SING N N 34 05Y C18 H11 SING N N 35 05Y C19 H12 SING N N 36 05Y C19 H13 SING N N 37 05Y C22 H14 SING N N 38 05Y C23 H15 SING N N 39 05Y C24 H16 SING N N 40 05Y C25 H17 SING N N 41 05Y N08 H18 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 05Y InChI InChI 1.03 "InChI=1S/C17H18N4O/c1-2-16(22)20-17-19-14-8-3-4-9-15(14)21(17)12-10-13-7-5-6-11-18-13/h3-9,11H,2,10,12H2,1H3,(H,19,20,22)" 05Y InChIKey InChI 1.03 XNCNQSNDNANIRM-UHFFFAOYSA-N 05Y SMILES_CANONICAL CACTVS 3.385 "CCC(=O)Nc1nc2ccccc2n1CCc3ccccn3" 05Y SMILES CACTVS 3.385 "CCC(=O)Nc1nc2ccccc2n1CCc3ccccn3" 05Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1nc2ccccc2n1CCc3ccccn3" 05Y SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)Nc1nc2ccccc2n1CCc3ccccn3" # _pdbx_chem_comp_identifier.comp_id 05Y _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[1-(2-pyridin-2-ylethyl)benzimidazol-2-yl]propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 05Y "Create component" 2021-06-03 PDBE 05Y "Initial release" 2022-04-06 RCSB ##