data_05Z # _chem_comp.id 05Z _chem_comp.name 6-benzylthio-2-chloropurine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H9 Cl N4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms 2-chloranyl-6-phenylmethylsulfanyl-7H-purine _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-05-28 _chem_comp.pdbx_modified_date 2022-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.745 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 05Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OOY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 05Z C10 C1 C 0 1 Y N N -30.662 0.190 27.047 3.138 -0.311 0.001 C10 05Z 1 05Z C11 C2 C 0 1 Y N N -29.841 -0.008 25.938 3.817 -0.182 1.197 C11 05Z 2 05Z C12 C3 C 0 1 Y N N -30.041 0.704 24.759 5.175 0.075 1.197 C12 05Z 3 05Z C13 C4 C 0 1 Y N N -31.081 1.610 24.688 5.854 0.202 -0.001 C13 05Z 4 05Z C14 C5 C 0 1 Y N N -31.908 1.808 25.786 5.175 0.072 -1.197 C14 05Z 5 05Z C15 C6 C 0 1 Y N N -31.703 1.103 26.965 3.818 -0.190 -1.197 C15 05Z 6 05Z C2 C7 C 0 1 Y N N -29.193 -2.921 31.680 -2.389 -1.403 0.004 C2 05Z 7 05Z C4 C8 C 0 1 Y N N -28.804 -1.192 33.194 -3.290 0.718 0.001 C4 05Z 8 05Z C5 C9 C 0 1 Y N N -29.458 -0.318 32.352 -1.990 1.249 -0.001 C5 05Z 9 05Z C6 C10 C 0 1 Y N N -29.989 -0.847 31.131 -0.906 0.368 0.000 C6 05Z 10 05Z C8 C11 C 0 1 Y N N -28.789 0.779 34.123 -3.465 2.879 -0.002 C8 05Z 11 05Z C9 C12 C 0 1 N N N -30.411 -0.622 28.325 1.657 -0.590 0.001 C9 05Z 12 05Z N1 N1 N 0 1 Y N N -29.823 -2.123 30.830 -1.151 -0.940 0.002 N1 05Z 13 05Z N3 N2 N 0 1 Y N N -28.687 -2.509 32.837 -3.440 -0.611 0.003 N3 05Z 14 05Z N7 N3 N 0 1 Y N N -29.432 0.895 32.958 -2.138 2.621 -0.002 N7 05Z 15 05Z N9 N4 N 0 1 Y N N -28.397 -0.479 34.294 -4.139 1.763 -0.000 N9 05Z 16 05Z S1 S1 S 0 1 N N N -30.835 0.176 29.910 0.748 0.975 -0.001 S1 05Z 17 05Z CL1 CL1 CL 0 0 N N N -29.042 -4.607 31.194 -2.639 -3.121 -0.001 CL1 05Z 18 05Z H1 H1 H 0 1 N N N -29.036 -0.726 25.995 3.286 -0.281 2.133 H1 05Z 19 05Z H2 H2 H 0 1 N N N -29.391 0.550 23.910 5.706 0.176 2.132 H2 05Z 20 05Z H3 H3 H 0 1 N N N -31.251 2.165 23.777 6.915 0.403 -0.001 H3 05Z 21 05Z H4 H4 H 0 1 N N N -32.719 2.518 25.722 5.705 0.172 -2.133 H4 05Z 22 05Z H5 H5 H 0 1 N N N -32.351 1.265 27.814 3.287 -0.292 -2.132 H5 05Z 23 05Z H7 H7 H 0 1 N N N -31.001 -1.548 28.251 1.395 -1.164 -0.888 H7 05Z 24 05Z H8 H8 H 0 1 N N N -29.340 -0.871 28.355 1.395 -1.161 0.892 H8 05Z 25 05Z H6 H6 H 0 1 N N N -28.614 1.585 34.820 -3.902 3.867 -0.003 H6 05Z 26 05Z H9 H9 H 0 1 N N N -29.829 1.737 32.593 -1.423 3.276 -0.003 H9 05Z 27 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 05Z C13 C12 SING Y N 1 05Z C13 C14 DOUB Y N 2 05Z C12 C11 DOUB Y N 3 05Z C14 C15 SING Y N 4 05Z C11 C10 SING Y N 5 05Z C15 C10 DOUB Y N 6 05Z C10 C9 SING N N 7 05Z C9 S1 SING N N 8 05Z S1 C6 SING N N 9 05Z N1 C6 DOUB Y N 10 05Z N1 C2 SING Y N 11 05Z C6 C5 SING Y N 12 05Z CL1 C2 SING N N 13 05Z C2 N3 DOUB Y N 14 05Z C5 N7 SING Y N 15 05Z C5 C4 DOUB Y N 16 05Z N3 C4 SING Y N 17 05Z N7 C8 SING Y N 18 05Z C4 N9 SING Y N 19 05Z C8 N9 DOUB Y N 20 05Z C11 H1 SING N N 21 05Z C12 H2 SING N N 22 05Z C13 H3 SING N N 23 05Z C14 H4 SING N N 24 05Z C15 H5 SING N N 25 05Z C9 H7 SING N N 26 05Z C9 H8 SING N N 27 05Z C8 H6 SING N N 28 05Z N7 H9 SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 05Z InChI InChI 1.03 "InChI=1S/C12H9ClN4S/c13-12-16-10-9(14-7-15-10)11(17-12)18-6-8-4-2-1-3-5-8/h1-5,7H,6H2,(H,14,15,16,17)" 05Z InChIKey InChI 1.03 CLBBDQGSXQEBIT-UHFFFAOYSA-N 05Z SMILES_CANONICAL CACTVS 3.385 "Clc1nc(SCc2ccccc2)c3[nH]cnc3n1" 05Z SMILES CACTVS 3.385 "Clc1nc(SCc2ccccc2)c3[nH]cnc3n1" 05Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CSc2c3c(nc[nH]3)nc(n2)Cl" 05Z SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CSc2c3c(nc[nH]3)nc(n2)Cl" # _pdbx_chem_comp_identifier.comp_id 05Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-chloranyl-6-(phenylmethylsulfanyl)-7~{H}-purine" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 05Z _pdbx_chem_comp_synonyms.name 2-chloranyl-6-phenylmethylsulfanyl-7H-purine _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 05Z "Create component" 2021-05-28 PDBE 05Z "Initial release" 2022-05-04 RCSB ##