data_09Y # _chem_comp.id 09Y _chem_comp.name "5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-07 _chem_comp.pdbx_modified_date 2022-06-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.397 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 09Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7N47 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 09Y C14 C1 C 0 1 N N N -6.148 29.264 -18.028 3.983 -2.392 0.132 C14 09Y 1 09Y C19 C2 C 0 1 Y N N -7.430 31.695 -15.209 4.145 1.300 0.113 C19 09Y 2 09Y C20 C3 C 0 1 Y N N -8.178 31.114 -14.199 5.508 1.506 0.333 C20 09Y 3 09Y C01 C4 C 0 1 N N N -4.677 34.020 -12.453 -8.453 0.282 1.439 C01 09Y 4 09Y C03 C5 C 0 1 Y N N -3.557 32.181 -11.518 -6.263 0.469 0.538 C03 09Y 5 09Y C04 C6 C 0 1 Y N N -2.369 31.927 -12.180 -4.886 0.594 0.674 C04 09Y 6 09Y C05 C7 C 0 1 Y N N -1.928 30.624 -12.355 -4.100 0.647 -0.463 C05 09Y 7 09Y C06 C8 C 0 1 N N N -0.625 30.317 -13.083 -2.602 0.782 -0.359 C06 09Y 8 09Y C07 C9 C 0 1 N N N -0.797 30.351 -14.598 -1.968 -0.609 -0.302 C07 09Y 9 09Y C09 C10 C 0 1 N N N -2.679 29.874 -16.186 0.260 -1.581 -0.137 C09 09Y 10 09Y C11 C11 C 0 1 N N N -4.162 29.950 -16.531 1.732 -1.449 -0.034 C11 09Y 11 09Y C12 C12 C 0 1 N N N -4.696 29.187 -17.694 2.531 -2.581 0.032 C12 09Y 12 09Y C17 C13 C 0 1 N N N -6.498 30.837 -16.059 3.597 -0.073 0.085 C17 09Y 13 09Y C21 C14 C 0 1 Y N N -9.022 31.894 -13.428 6.014 2.789 0.358 C21 09Y 14 09Y C22 C15 C 0 1 Y N N -9.118 33.255 -13.667 5.173 3.871 0.164 C22 09Y 15 09Y C23 C16 C 0 1 Y N N -8.369 33.837 -14.677 3.821 3.674 -0.056 C23 09Y 16 09Y C24 C17 C 0 1 Y N N -7.525 33.057 -15.448 3.302 2.395 -0.076 C24 09Y 17 09Y C25 C18 C 0 1 N N N -6.699 33.695 -16.560 1.829 2.183 -0.316 C25 09Y 18 09Y C26 C19 C 0 1 Y N N -2.717 29.613 -11.836 -4.721 0.573 -1.703 C26 09Y 19 09Y C27 C20 C 0 1 Y N N -3.892 29.933 -11.180 -6.095 0.449 -1.763 C27 09Y 20 09Y N08 N1 N 0 1 N N N -2.205 30.422 -14.933 -0.512 -0.479 -0.201 N08 09Y 21 09Y N16 N2 N 0 1 N N N -7.036 30.079 -17.220 4.459 -1.128 0.155 N16 09Y 22 09Y N18 N3 N 0 1 N N N -5.053 30.763 -15.724 2.299 -0.233 -0.004 N18 09Y 23 09Y N28 N4 N 0 1 Y N N -4.283 31.188 -11.035 -6.818 0.396 -0.660 N28 09Y 24 09Y O02 O1 O 0 1 N N N -3.982 33.505 -11.353 -7.046 0.416 1.645 O02 09Y 25 09Y O10 O2 O 0 1 N N N -1.915 29.365 -16.935 -0.250 -2.684 -0.163 O10 09Y 26 09Y O13 O3 O 0 1 N N N -3.835 28.403 -18.471 1.987 -3.823 0.004 O13 09Y 27 09Y O15 O4 O 0 1 N N N -6.574 28.659 -18.953 4.737 -3.348 0.198 O15 09Y 28 09Y H1 H1 H 0 1 N N N -8.103 30.053 -14.013 6.166 0.662 0.485 H1 09Y 29 09Y H2 H2 H 0 1 N N N -4.975 35.058 -12.246 -8.961 0.252 2.403 H2 09Y 30 09Y H3 H3 H 0 1 N N N -4.028 33.995 -13.341 -8.819 1.131 0.862 H3 09Y 31 09Y H4 H4 H 0 1 N N N -5.574 33.411 -12.637 -8.654 -0.641 0.894 H4 09Y 32 09Y H5 H5 H 0 1 N N N -1.782 32.748 -12.563 -4.436 0.650 1.654 H5 09Y 33 09Y H6 H6 H 0 1 N N N -0.280 29.315 -12.787 -2.224 1.318 -1.229 H6 09Y 34 09Y H7 H7 H 0 1 N N N 0.128 31.065 -12.794 -2.349 1.334 0.546 H7 09Y 35 09Y H8 H8 H 0 1 N N N -0.364 29.439 -15.035 -2.346 -1.146 0.568 H8 09Y 36 09Y H9 H9 H 0 1 N N N -0.281 31.233 -15.004 -2.221 -1.161 -1.207 H9 09Y 37 09Y H10 H10 H 0 1 N N N -9.606 31.442 -12.640 7.068 2.950 0.529 H10 09Y 38 09Y H11 H11 H 0 1 N N N -9.777 33.863 -13.065 5.573 4.873 0.184 H11 09Y 39 09Y H12 H12 H 0 1 N N N -8.444 34.898 -14.862 3.170 4.522 -0.206 H12 09Y 40 09Y H13 H13 H 0 1 N N N -7.272 33.677 -17.499 1.321 2.048 0.639 H13 09Y 41 09Y H14 H14 H 0 1 N N N -6.466 34.736 -16.292 1.415 3.051 -0.828 H14 09Y 42 09Y H15 H15 H 0 1 N N N -5.763 33.132 -16.691 1.686 1.295 -0.932 H15 09Y 43 09Y H16 H16 H 0 1 N N N -2.418 28.581 -11.942 -4.136 0.612 -2.610 H16 09Y 44 09Y H17 H17 H 0 1 N N N -4.504 29.140 -10.777 -6.583 0.392 -2.724 H17 09Y 45 09Y H18 H18 H 0 1 N N N -2.849 30.850 -14.299 -0.105 0.401 -0.179 H18 09Y 46 09Y H19 H19 H 0 1 N N N -8.009 30.131 -17.444 5.414 -0.970 0.221 H19 09Y 47 09Y H20 H20 H 0 1 N N N -2.943 28.513 -18.164 2.637 -4.538 0.055 H20 09Y 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 09Y O15 C14 DOUB N N 1 09Y O13 C12 SING N N 2 09Y C14 C12 SING N N 3 09Y C14 N16 SING N N 4 09Y C12 C11 DOUB N N 5 09Y N16 C17 SING N N 6 09Y O10 C09 DOUB N N 7 09Y C25 C24 SING N N 8 09Y C11 C09 SING N N 9 09Y C11 N18 SING N N 10 09Y C09 N08 SING N N 11 09Y C17 N18 DOUB N N 12 09Y C17 C19 SING N N 13 09Y C24 C19 DOUB Y N 14 09Y C24 C23 SING Y N 15 09Y C19 C20 SING Y N 16 09Y N08 C07 SING N N 17 09Y C23 C22 DOUB Y N 18 09Y C07 C06 SING N N 19 09Y C20 C21 DOUB Y N 20 09Y C22 C21 SING Y N 21 09Y C06 C05 SING N N 22 09Y C01 O02 SING N N 23 09Y C05 C04 DOUB Y N 24 09Y C05 C26 SING Y N 25 09Y C04 C03 SING Y N 26 09Y C26 C27 DOUB Y N 27 09Y C03 O02 SING N N 28 09Y C03 N28 DOUB Y N 29 09Y C27 N28 SING Y N 30 09Y C20 H1 SING N N 31 09Y C01 H2 SING N N 32 09Y C01 H3 SING N N 33 09Y C01 H4 SING N N 34 09Y C04 H5 SING N N 35 09Y C06 H6 SING N N 36 09Y C06 H7 SING N N 37 09Y C07 H8 SING N N 38 09Y C07 H9 SING N N 39 09Y C21 H10 SING N N 40 09Y C22 H11 SING N N 41 09Y C23 H12 SING N N 42 09Y C25 H13 SING N N 43 09Y C25 H14 SING N N 44 09Y C25 H15 SING N N 45 09Y C26 H16 SING N N 46 09Y C27 H17 SING N N 47 09Y N08 H18 SING N N 48 09Y N16 H19 SING N N 49 09Y O13 H20 SING N N 50 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 09Y SMILES ACDLabs 12.01 "OC1=C(N=C(NC1=O)c1ccccc1C)C(=O)NCCc1ccnc(OC)c1" 09Y InChI InChI 1.03 "InChI=1S/C20H20N4O4/c1-12-5-3-4-6-14(12)18-23-16(17(25)20(27)24-18)19(26)22-10-8-13-7-9-21-15(11-13)28-2/h3-7,9,11,25H,8,10H2,1-2H3,(H,22,26)(H,23,24,27)" 09Y InChIKey InChI 1.03 NCYTYISCUURTPV-UHFFFAOYSA-N 09Y SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccn1" 09Y SMILES CACTVS 3.385 "COc1cc(CCNC(=O)C2=C(O)C(=O)NC(=N2)c3ccccc3C)ccn1" 09Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccnc(c3)OC" 09Y SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccccc1C2=NC(=C(C(=O)N2)O)C(=O)NCCc3ccnc(c3)OC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 09Y "SYSTEMATIC NAME" ACDLabs 12.01 "5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide" 09Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-(2-methoxypyridin-4-yl)ethyl]-2-(2-methylphenyl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 09Y "Create component" 2021-06-07 RCSB 09Y "Initial release" 2022-06-08 RCSB ##