data_0D6 # _chem_comp.id 0D6 _chem_comp.name "N-{(1R)-3-phenyl-1-[2-(phenylsulfonyl)ethyl]propyl}-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H40 N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms APC3328 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-11-07 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 528.707 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0D6 _chem_comp.pdbx_model_coordinates_details "not provided" _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1MEM _chem_comp.pdbx_subcomponent_list "BZP LEU NFP" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0D6 N1 N1 N 0 1 N N N 23.684 1.627 5.333 4.755 2.662 -0.209 N1 BZP 1 0D6 C1 C1 C 0 1 N N N 22.467 2.154 5.176 3.616 2.298 0.414 C1 BZP 2 0D6 O1 O1 O 0 1 N N N 22.315 3.094 4.395 3.494 2.476 1.610 O1 BZP 3 0D6 C2 C2 C 0 1 N N N 24.889 2.186 4.636 5.816 3.376 0.515 C2 BZP 4 0D6 C3 C3 C 0 1 N N N 26.104 2.190 5.488 7.143 2.646 0.280 C3 BZP 5 0D6 N4 N2 N 0 1 N N N 26.345 0.849 6.018 7.368 2.498 -1.164 N4 BZP 6 0D6 C5 C4 C 0 1 N N N 25.237 0.357 6.833 6.328 1.664 -1.782 C5 BZP 7 0D6 C6 C5 C 0 1 N N N 23.942 0.354 6.060 4.971 2.349 -1.630 C6 BZP 8 0D6 N N3 N 0 1 N N N 21.408 1.597 5.763 2.613 1.737 -0.290 N LEU 9 0D6 CA C6 C 0 1 N N S 20.085 2.182 5.590 1.336 1.441 0.364 CA LEU 10 0D6 C C7 C 0 1 N N N 20.104 3.574 6.163 0.690 0.256 -0.307 C LEU 11 0D6 O O3 O 0 1 N N N 20.603 3.777 7.267 1.053 -0.087 -1.412 O LEU 12 0D6 CB C8 C 0 1 N N N 19.020 1.366 6.308 0.412 2.656 0.253 CB LEU 13 0D6 CG C9 C 0 1 N N N 18.340 0.174 5.637 -0.870 2.396 1.046 CG LEU 14 0D6 CD1 C10 C 0 1 N N N 18.880 -0.171 4.260 -0.534 2.279 2.534 CD1 LEU 15 0D6 CD2 C11 C 0 1 N N N 18.417 -0.985 6.585 -1.845 3.556 0.833 CD2 LEU 16 0D6 C11 C12 C 0 1 N N N 17.437 6.567 4.612 -3.168 -0.717 -0.254 C1 NFP 17 0D6 C21 C13 C 0 1 N N N 18.165 6.409 5.974 -2.269 -1.857 0.229 C2 NFP 18 0D6 C31 C14 C 0 1 N N S 19.620 5.922 5.809 -0.845 -1.636 -0.284 C3 NFP 19 0D6 N2 N4 N 0 1 N N N 19.676 4.544 5.368 -0.291 -0.422 0.321 N NFP 20 0D6 C4 C15 C 0 1 N N N 20.460 6.805 4.883 0.025 -2.836 0.093 C4 NFP 21 0D6 C51 C16 C 0 1 N N N 21.948 6.483 4.961 1.415 -2.674 -0.527 C5 NFP 22 0D6 "C1'" C17 C 0 1 Y N N 22.765 7.285 3.979 2.272 -3.856 -0.156 C6 NFP 23 0D6 "C2'" C18 C 0 1 Y N N 23.248 6.684 2.801 2.295 -4.975 -0.967 C7 NFP 24 0D6 "C3'" C19 C 0 1 Y N N 23.922 7.464 1.847 3.081 -6.060 -0.627 C8 NFP 25 0D6 "C4'" C20 C 0 1 Y N N 24.117 8.837 2.071 3.845 -6.026 0.525 C9 NFP 26 0D6 "C5'" C21 C 0 1 Y N N 23.650 9.436 3.237 3.822 -4.907 1.336 C10 NFP 27 0D6 "C6'" C22 C 0 1 Y N N 22.981 8.666 4.189 3.039 -3.820 0.993 C11 NFP 28 0D6 C12 C23 C 0 1 Y N N 15.866 8.793 -0.030 -7.198 2.545 -1.254 C12 NFP 29 0D6 C22 C24 C 0 1 Y N N 16.272 9.914 0.695 -7.100 1.383 -1.997 C13 NFP 30 0D6 C32 C25 C 0 1 Y N N 16.790 9.775 1.994 -6.385 0.307 -1.505 C14 NFP 31 0D6 C41 C26 C 0 1 Y N N 16.931 8.502 2.593 -5.768 0.392 -0.271 C15 NFP 32 0D6 S1 S1 S 0 1 N N N 17.093 8.339 4.349 -4.857 -0.979 0.355 S1 NFP 33 0D6 O11 O5 O 0 1 N N N 15.807 8.974 4.966 -5.445 -2.109 -0.276 O1 NFP 34 0D6 O2 O6 O 0 1 N N N 18.323 9.217 4.677 -4.909 -0.820 1.766 O2 NFP 35 0D6 C52 C27 C 0 1 Y N N 16.510 7.379 1.819 -5.866 1.554 0.472 C16 NFP 36 0D6 C61 C28 C 0 1 Y N N 15.983 7.530 0.527 -6.581 2.631 -0.020 C17 NFP 37 0D6 H21 H2 H 0 1 N N N 25.092 1.569 3.749 5.890 4.398 0.142 H21 BZP 38 0D6 H22 H3 H 0 1 N N N 24.669 3.223 4.344 5.588 3.388 1.581 H22 BZP 39 0D6 H31 H4 H 0 1 N N N 26.969 2.505 4.886 7.958 3.222 0.718 H31 BZP 40 0D6 H32 H5 H 0 1 N N N 25.960 2.891 6.323 7.103 1.661 0.745 H32 BZP 41 0D6 HN4 H6 H 0 1 N N N 26.473 0.224 5.248 7.425 3.398 -1.615 HN4 BZP 42 0D6 H51 H7 H 0 1 N N N 25.461 -0.671 7.153 6.552 1.529 -2.840 H51 BZP 43 0D6 H52 H8 H 0 1 N N N 25.125 1.011 7.711 6.299 0.693 -1.289 H52 BZP 44 0D6 H61 H9 H 0 1 N N N 23.118 0.192 6.771 4.184 1.682 -1.982 H61 BZP 45 0D6 H62 H10 H 0 1 N N N 23.985 -0.460 5.322 4.962 3.270 -2.213 H62 BZP 46 0D6 H H11 H 0 1 N N N 21.522 0.776 6.323 2.736 1.528 -1.229 H LEU 47 0D6 HA H13 H 0 1 N N N 19.841 2.197 4.517 1.510 1.212 1.416 HA LEU 48 0D6 HB2 H14 H 0 1 N N N 19.511 0.961 7.205 0.917 3.534 0.656 HB2 LEU 49 0D6 HB3 H15 H 0 1 N N N 18.212 2.074 6.543 0.163 2.828 -0.794 HB3 LEU 50 0D6 HG H16 H 0 1 N N N 17.293 0.444 5.434 -1.328 1.468 0.703 HG LEU 51 0D6 HD11 H17 H 0 0 N N N 18.333 -1.037 3.858 -1.434 2.014 3.090 HD11 LEU 52 0D6 HD12 H18 H 0 0 N N N 18.748 0.690 3.588 0.222 1.507 2.677 HD12 LEU 53 0D6 HD13 H19 H 0 0 N N N 19.950 -0.416 4.337 -0.152 3.233 2.897 HD13 LEU 54 0D6 HD21 H20 H 0 0 N N N 17.935 -1.863 6.131 -2.084 3.639 -0.227 HD21 LEU 55 0D6 HD22 H21 H 0 0 N N N 19.471 -1.215 6.798 -2.759 3.371 1.398 HD22 LEU 56 0D6 HD23 H22 H 0 0 N N N 17.902 -0.727 7.522 -1.387 4.483 1.176 HD23 LEU 57 0D6 H11 H24 H 0 1 N N N 18.075 6.186 3.801 -2.788 0.231 0.126 H1 NFP 58 0D6 H12 H25 H 0 1 N N N 16.494 6.001 4.624 -3.174 -0.696 -1.343 H2 NFP 59 0D6 H211 H27 H 0 0 N N N 18.179 7.387 6.478 -2.263 -1.878 1.319 H3 NFP 60 0D6 H221 H28 H 0 0 N N N 17.617 5.673 6.580 -2.649 -2.806 -0.150 H4 NFP 61 0D6 H3 H29 H 0 1 N N N 20.064 5.996 6.813 -0.863 -1.526 -1.368 H5 NFP 62 0D6 HN2 H31 H 0 1 N N N 19.384 4.318 4.439 -0.630 -0.106 1.173 H6 NFP 63 0D6 H41 H32 H 0 1 N N N 20.123 6.645 3.848 0.115 -2.894 1.177 H7 NFP 64 0D6 H42 H33 H 0 1 N N N 20.315 7.855 5.177 -0.435 -3.751 -0.282 H8 NFP 65 0D6 H511 H34 H 0 0 N N N 22.301 6.712 5.977 1.324 -2.617 -1.612 H9 NFP 66 0D6 H521 H35 H 0 0 N N N 22.085 5.415 4.738 1.875 -1.760 -0.152 H10 NFP 67 0D6 "H2'" H36 H 0 1 N N N 23.101 5.628 2.632 1.698 -5.002 -1.867 H11 NFP 68 0D6 "H3'" H37 H 0 1 N N N 24.291 7.008 0.940 3.098 -6.934 -1.260 H12 NFP 69 0D6 "H4'" H38 H 0 1 N N N 24.633 9.432 1.333 4.458 -6.874 0.791 H13 NFP 70 0D6 "H5'" H39 H 0 1 N N N 23.805 10.492 3.404 4.419 -4.880 2.236 H14 NFP 71 0D6 "H6'" H40 H 0 1 N N N 22.624 9.130 5.096 3.025 -2.944 1.625 H15 NFP 72 0D6 H1 H41 H 0 1 N N N 15.461 8.910 -1.024 -7.752 3.388 -1.640 H16 NFP 73 0D6 H2 H42 H 0 1 N N N 16.187 10.896 0.254 -7.582 1.316 -2.960 H17 NFP 74 0D6 H33 H43 H 0 1 N N N 17.086 10.656 2.544 -6.309 -0.601 -2.085 H18 NFP 75 0D6 H5 H44 H 0 1 N N N 16.599 6.388 2.238 -5.384 1.621 1.436 H19 NFP 76 0D6 H6 H45 H 0 1 N N N 15.669 6.662 -0.033 -6.657 3.538 0.560 H20 NFP 77 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0D6 N1 C1 SING N N 1 0D6 N1 C2 SING N N 2 0D6 N1 C6 SING N N 3 0D6 C1 O1 DOUB N N 4 0D6 C2 C3 SING N N 5 0D6 C2 H21 SING N N 6 0D6 C2 H22 SING N N 7 0D6 C3 N4 SING N N 8 0D6 C3 H31 SING N N 9 0D6 C3 H32 SING N N 10 0D6 N4 C5 SING N N 11 0D6 N4 HN4 SING N N 12 0D6 C5 C6 SING N N 13 0D6 C5 H51 SING N N 14 0D6 C5 H52 SING N N 15 0D6 C6 H61 SING N N 16 0D6 C6 H62 SING N N 17 0D6 N CA SING N N 18 0D6 N H SING N N 19 0D6 CA C SING N N 20 0D6 CA CB SING N N 21 0D6 CA HA SING N N 22 0D6 C O DOUB N N 23 0D6 CB CG SING N N 24 0D6 CB HB2 SING N N 25 0D6 CB HB3 SING N N 26 0D6 CG CD1 SING N N 27 0D6 CG CD2 SING N N 28 0D6 CG HG SING N N 29 0D6 CD1 HD11 SING N N 30 0D6 CD1 HD12 SING N N 31 0D6 CD1 HD13 SING N N 32 0D6 CD2 HD21 SING N N 33 0D6 CD2 HD22 SING N N 34 0D6 CD2 HD23 SING N N 35 0D6 C11 C21 SING N N 36 0D6 C11 H11 SING N N 37 0D6 C11 H12 SING N N 38 0D6 C21 C31 SING N N 39 0D6 C21 H211 SING N N 40 0D6 C21 H221 SING N N 41 0D6 C31 N2 SING N N 42 0D6 C31 C4 SING N N 43 0D6 C31 H3 SING N N 44 0D6 N2 HN2 SING N N 45 0D6 C4 C51 SING N N 46 0D6 C4 H41 SING N N 47 0D6 C4 H42 SING N N 48 0D6 C51 "C1'" SING N N 49 0D6 C51 H511 SING N N 50 0D6 C51 H521 SING N N 51 0D6 "C1'" "C2'" DOUB Y N 52 0D6 "C1'" "C6'" SING Y N 53 0D6 "C2'" "C3'" SING Y N 54 0D6 "C2'" "H2'" SING N N 55 0D6 "C3'" "C4'" DOUB Y N 56 0D6 "C3'" "H3'" SING N N 57 0D6 "C4'" "C5'" SING Y N 58 0D6 "C4'" "H4'" SING N N 59 0D6 "C5'" "C6'" DOUB Y N 60 0D6 "C5'" "H5'" SING N N 61 0D6 "C6'" "H6'" SING N N 62 0D6 C12 C22 DOUB Y N 63 0D6 C12 C61 SING Y N 64 0D6 C12 H1 SING N N 65 0D6 C22 C32 SING Y N 66 0D6 C22 H2 SING N N 67 0D6 C32 C41 DOUB Y N 68 0D6 C32 H33 SING N N 69 0D6 C41 S1 SING N N 70 0D6 C41 C52 SING Y N 71 0D6 S1 O11 DOUB N N 72 0D6 S1 O2 DOUB N N 73 0D6 C52 C61 DOUB Y N 74 0D6 C52 H5 SING N N 75 0D6 C61 H6 SING N N 76 0D6 C1 N SING N N 77 0D6 C N2 SING N N 78 0D6 C11 S1 SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0D6 SMILES ACDLabs 12.01 "O=C(NC(C(=O)NC(CCc1ccccc1)CCS(=O)(=O)c2ccccc2)CC(C)C)N3CCNCC3" 0D6 SMILES_CANONICAL CACTVS 3.370 "CC(C)C[C@H](NC(=O)N1CCNCC1)C(=O)N[C@@H](CCc2ccccc2)CC[S](=O)(=O)c3ccccc3" 0D6 SMILES CACTVS 3.370 "CC(C)C[CH](NC(=O)N1CCNCC1)C(=O)N[CH](CCc2ccccc2)CC[S](=O)(=O)c3ccccc3" 0D6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)C[C@@H](C(=O)N[C@@H](CCc1ccccc1)CCS(=O)(=O)c2ccccc2)NC(=O)N3CCNCC3" 0D6 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)CC(C(=O)NC(CCc1ccccc1)CCS(=O)(=O)c2ccccc2)NC(=O)N3CCNCC3" 0D6 InChI InChI 1.03 "InChI=1S/C28H40N4O4S/c1-22(2)21-26(31-28(34)32-18-16-29-17-19-32)27(33)30-24(14-13-23-9-5-3-6-10-23)15-20-37(35,36)25-11-7-4-8-12-25/h3-12,22,24,26,29H,13-21H2,1-2H3,(H,30,33)(H,31,34)/t24-,26-/m0/s1" 0D6 InChIKey InChI 1.03 GZQYXFWTRHRNKT-AHWVRZQESA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0D6 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3S)-1-phenyl-5-(phenylsulfonyl)pentan-3-yl]-N~2~-(piperazin-1-ylcarbonyl)-L-leucinamide" 0D6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "N-[(2S)-4-methyl-1-oxo-1-[[(3S)-1-phenyl-5-(phenylsulfonyl)pentan-3-yl]amino]pentan-2-yl]piperazine-1-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0D6 "Create component" 2008-11-07 RCSB 0D6 "Modify aromatic_flag" 2011-06-04 RCSB 0D6 "Modify descriptor" 2011-06-04 RCSB 0D6 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0D6 _pdbx_chem_comp_synonyms.name APC3328 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##