data_0DA # _chem_comp.id 0DA _chem_comp.name ;2'-DEOXY-L-RIBO-FURANOSYL ADENOSINE-5'-MONOPHOSPHATE ; _chem_comp.type "L-DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-27 _chem_comp.pdbx_modified_date 2015-05-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces A _chem_comp.formula_weight 331.222 _chem_comp.one_letter_code A _chem_comp.three_letter_code 0DA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0DA C8A C8A C 0 1 Y N N 5.903 1.463 1.322 1.766 1.103 -0.839 C8A 0DA 1 0DA N9A N9A N 0 1 Y N N 5.175 1.605 0.177 1.879 -0.007 -0.056 N9A 0DA 2 0DA C4A C4A C 0 1 Y N N 3.859 1.627 0.567 3.197 -0.119 0.310 C4A 0DA 3 0DA C5A C5A C 0 1 Y N N 3.875 1.565 1.933 3.858 0.967 -0.287 C5A 0DA 4 0DA N7A N7A N 0 1 Y N N 5.187 1.468 2.416 2.928 1.673 -0.974 N7A 0DA 5 0DA N3A N3A N 0 1 Y N N 2.766 1.690 -0.240 3.896 -0.975 1.048 N3A 0DA 6 0DA C2A C2A C 0 1 Y N N 1.634 1.668 0.464 5.191 -0.811 1.219 C2A 0DA 7 0DA N1A N1A N 0 1 Y N N 1.483 1.626 1.788 5.856 0.194 0.679 N1A 0DA 8 0DA C6A C6A C 0 1 Y N N 2.598 1.586 2.535 5.241 1.099 -0.075 C6A 0DA 9 0DA N6A N6A N 0 1 N N N 2.427 1.540 3.844 5.947 2.148 -0.637 N6A 0DA 10 0DA "C4'" "C4'" C 0 1 N N S 7.924 2.396 -1.411 -1.465 -1.285 0.147 "C4'" 0DA 11 0DA "O4'" "O4'" O 0 1 N N N 6.695 2.912 -0.970 -0.479 -0.234 0.248 "O4'" 0DA 12 0DA "C3'" "C3'" C 0 1 N N R 7.754 0.916 -1.767 -0.837 -2.326 -0.806 "C3'" 0DA 13 0DA "C2'" "C2'" C 0 1 N N N 6.253 0.801 -1.985 0.683 -2.076 -0.686 "C2'" 0DA 14 0DA "C1'" "C1'" C 0 1 N N S 5.689 1.952 -1.155 0.793 -0.913 0.326 "C1'" 0DA 15 0DA "O3'" "O3'" O 0 1 N N N 8.076 1.303 -3.105 -1.161 -3.652 -0.383 "O3'" 0DA 16 0DA "C5'" "C5'" C 0 1 N N N 9.058 2.676 -0.408 -2.767 -0.739 -0.444 "C5'" 0DA 17 0DA "O5'" "O5'" O 0 1 N N N 10.121 3.216 -1.198 -3.353 0.190 0.470 "O5'" 0DA 18 0DA P P P 0 1 N N N 11.617 3.631 -0.459 -4.735 0.960 0.173 P 0DA 19 0DA OP2 OP2 O 0 1 N N N 11.779 3.143 1.183 -5.939 -0.106 0.100 OP2 0DA 20 0DA OP3 OP3 O 0 1 N Y N 13.097 2.756 -0.413 -5.025 2.017 1.352 OP3 0DA 21 0DA OP1 OP1 O 0 1 N N N 11.814 5.331 -0.636 -4.631 1.678 -1.118 OP1 0DA 22 0DA H8A H8A H 0 1 N N N 6.978 1.356 1.325 0.848 1.455 -1.286 H8A 0DA 23 0DA H2A H2A H 0 1 N N N 0.721 1.687 -0.113 5.729 -1.525 1.825 H2A 0DA 24 0DA HN61 HN61 H 0 0 N N N 1.449 1.543 4.053 5.487 2.803 -1.186 HN61 0DA 25 0DA HN62 HN62 H 0 0 N N N 2.842 0.705 4.205 6.901 2.229 -0.483 HN62 0DA 26 0DA "H4'" "H4'" H 0 1 N N N 8.236 2.917 -2.328 -1.649 -1.728 1.126 "H4'" 0DA 27 0DA "H3'" "H3'" H 0 1 N N N 8.208 0.106 -1.177 -1.172 -2.158 -1.829 "H3'" 0DA 28 0DA "H2'" "H2'" H 0 1 N N N 5.989 0.902 -3.048 1.187 -2.963 -0.303 "H2'" 0DA 29 0DA "H2''" "H2''" H 0 0 N N N 5.868 -0.171 -1.644 1.099 -1.784 -1.650 "H2''" 0DA 30 0DA "H1'" "H1'" H 0 1 N N N 4.826 2.310 -1.735 0.957 -1.298 1.332 "H1'" 0DA 31 0DA "HO3'" "HO3'" H 0 0 N Y N 8.062 0.538 -3.668 -0.792 -4.346 -0.946 "HO3'" 0DA 32 0DA "H5'" "H5'" H 0 1 N N N 8.736 3.392 0.363 -2.554 -0.235 -1.387 "H5'" 0DA 33 0DA "H5''" "H5''" H 0 0 N N N 9.373 1.753 0.100 -3.459 -1.562 -0.620 "H5''" 0DA 34 0DA H2P H2P H 0 1 N N N 11.952 3.904 1.724 -6.064 -0.614 0.913 H2P 0DA 35 0DA HOP3 HOP3 H 0 0 N Y N 13.825 3.360 -0.495 -5.843 2.519 1.239 HOP3 0DA 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0DA C8A N9A SING Y N 1 0DA C8A N7A DOUB Y N 2 0DA N9A C4A SING Y N 3 0DA N9A "C1'" SING N N 4 0DA C4A C5A DOUB Y N 5 0DA C4A N3A SING Y N 6 0DA C5A N7A SING Y N 7 0DA C5A C6A SING Y N 8 0DA N3A C2A DOUB Y N 9 0DA C2A N1A SING Y N 10 0DA N1A C6A DOUB Y N 11 0DA C6A N6A SING N N 12 0DA "C4'" "O4'" SING N N 13 0DA "C4'" "C3'" SING N N 14 0DA "O4'" "C1'" SING N N 15 0DA "C3'" "C2'" SING N N 16 0DA "C2'" "C1'" SING N N 17 0DA "C3'" "O3'" SING N N 18 0DA "C4'" "C5'" SING N N 19 0DA "C5'" "O5'" SING N N 20 0DA "O5'" P SING N N 21 0DA P OP2 SING N N 22 0DA P OP3 SING N N 23 0DA P OP1 DOUB N N 24 0DA C8A H8A SING N N 25 0DA C2A H2A SING N N 26 0DA N6A HN61 SING N N 27 0DA N6A HN62 SING N N 28 0DA "C4'" "H4'" SING N N 29 0DA "C3'" "H3'" SING N N 30 0DA "C2'" "H2'" SING N N 31 0DA "C2'" "H2''" SING N N 32 0DA "C1'" "H1'" SING N N 33 0DA "O3'" "HO3'" SING N N 34 0DA "C5'" "H5'" SING N N 35 0DA "C5'" "H5''" SING N N 36 0DA OP2 H2P SING N N 37 0DA OP3 HOP3 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0DA SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)CC3O" 0DA SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3C[C@@H](O)[C@H](CO[P](O)(O)=O)O3" 0DA SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" 0DA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@H]([C@@H](O3)COP(=O)(O)O)O)N" 0DA SMILES "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)O)O)N" 0DA InChI InChI 1.03 "InChI=1S/C10H14N5O6P/c11-9-8-10(13-3-12-9)15(4-14-8)7-1-5(16)6(21-7)2-20-22(17,18)19/h3-7,16H,1-2H2,(H2,11,12,13)(H2,17,18,19)/t5-,6+,7+/m1/s1" 0DA InChIKey InChI 1.03 KHWCHTKSEGGWEX-VQVTYTSYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0DA "SYSTEMATIC NAME" ACDLabs 12.01 "9-(2-deoxy-5-O-phosphono-beta-L-erythro-pentofuranosyl)-9H-purin-6-amine" 0DA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2S,3R,5S)-5-(6-aminopurin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0DA "Create component" 2009-07-27 RCSB 0DA "Modify aromatic_flag" 2011-06-04 RCSB 0DA "Modify descriptor" 2011-06-04 RCSB 0DA "Initial release" 2015-05-06 RCSB #