data_0DC # _chem_comp.id 0DC _chem_comp.name ;2'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONOPHOSPHATE ; _chem_comp.type "L-DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H14 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-07-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 307.197 _chem_comp.one_letter_code C _chem_comp.three_letter_code 0DC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FV7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0DC OP3 O3P O 0 1 N Y N 2.867 -4.126 -5.719 4.723 1.691 -1.320 OP3 0DC 1 0DC P P P 0 1 N N N 4.181 -4.721 -5.009 4.190 0.861 -0.048 P 0DC 2 0DC OP1 O1P O 0 1 N N N 3.744 -5.783 -4.064 5.207 -0.136 0.352 OP1 0DC 3 0DC OP2 O2P O 0 1 N N N 5.173 -5.045 -6.065 3.918 1.871 1.176 OP2 0DC 4 0DC "O5'" "O5'" O 0 1 N N N 4.746 -3.500 -4.155 2.821 0.107 -0.435 "O5'" 0DC 5 0DC "C5'" "C5'" C 0 1 N N N 4.259 -3.230 -2.838 2.154 -0.796 0.448 "C5'" 0DC 6 0DC "C4'" "C4'" C 0 1 N N S 4.105 -1.741 -2.633 0.891 -1.333 -0.229 "C4'" 0DC 7 0DC "O4'" "O4'" O 0 1 N N N 3.000 -1.506 -1.727 -0.067 -0.270 -0.421 "O4'" 0DC 8 0DC "C3'" "C3'" C 0 1 N N R 3.779 -0.945 -3.895 0.177 -2.348 0.691 "C3'" 0DC 9 0DC "O3'" "O3'" O 0 1 N N N 4.339 0.371 -3.816 0.510 -3.685 0.315 "O3'" 0DC 10 0DC "C2'" "C2'" C 0 1 N N N 2.264 -0.883 -3.879 -1.326 -2.077 0.453 "C2'" 0DC 11 0DC "C1'" "C1'" C 0 1 N N S 1.953 -0.813 -2.393 -1.341 -0.931 -0.583 "C1'" 0DC 12 0DC N1 N1 N 0 1 N N N 0.677 -1.440 -2.010 -2.438 -0.001 -0.298 N1 0DC 13 0DC C2 C2 C 0 1 N N N -0.484 -0.661 -2.001 -3.712 -0.429 -0.363 C2 0DC 14 0DC O2 O2 O 0 1 N N N -0.407 0.536 -2.314 -3.940 -1.590 -0.660 O2 0DC 15 0DC N3 N3 N 0 1 N N N -1.659 -1.232 -1.653 -4.727 0.394 -0.110 N3 0DC 16 0DC C4 C4 C 0 1 N N N -1.700 -2.525 -1.323 -4.507 1.661 0.214 C4 0DC 17 0DC N4 N4 N 0 1 N N N -2.880 -3.047 -0.989 -5.564 2.503 0.475 N4 0DC 18 0DC C5 C5 C 0 1 N N N -0.533 -3.341 -1.323 -3.184 2.141 0.291 C5 0DC 19 0DC C6 C6 C 0 1 N N N 0.623 -2.763 -1.669 -2.161 1.291 0.036 C6 0DC 20 0DC HOP3 HOP3 H 0 0 N N N 2.097 -4.574 -5.388 5.547 2.172 -1.159 HOP3 0DC 21 0DC HOP2 HOP2 H 0 0 N N N 5.421 -5.960 -5.997 3.260 2.554 0.984 HOP2 0DC 22 0DC "H5'" "H5'1" H 0 1 N N N 3.281 -3.717 -2.707 2.818 -1.627 0.689 "H5'" 0DC 23 0DC "H5''" "H5'2" H 0 0 N N N 4.973 -3.625 -2.100 1.880 -0.273 1.364 "H5''" 0DC 24 0DC "H4'" "H4'" H 0 1 N N N 5.082 -1.404 -2.257 1.141 -1.795 -1.184 "H4'" 0DC 25 0DC "H3'" "H3'" H 0 1 N N N 4.185 -1.396 -4.813 0.439 -2.168 1.733 "H3'" 0DC 26 0DC "HO3'" H3T H 0 0 N Y N 4.128 0.853 -4.607 0.088 -4.364 0.860 "HO3'" 0DC 27 0DC "H2'" "H2'1" H 0 1 N N N 1.884 -0.003 -4.419 -1.814 -2.963 0.049 "H2'" 0DC 28 0DC "H2''" "H2'2" H 0 0 N N N 1.813 -1.768 -4.351 -1.808 -1.762 1.378 "H2''" 0DC 29 0DC "H1'" "H1'" H 0 1 N N N 1.870 0.249 -2.117 -1.435 -1.332 -1.592 "H1'" 0DC 30 0DC H41 H41 H 0 1 N N N -3.699 -2.473 -0.991 -6.473 2.169 0.422 H41 0DC 31 0DC H42 H42 H 0 1 N N N -2.946 -4.012 -0.736 -5.400 3.429 0.712 H42 0DC 32 0DC H5 H5 H 0 1 N N N -0.579 -4.386 -1.054 -2.988 3.171 0.553 H5 0DC 33 0DC H6 H6 H 0 1 N N N 1.529 -3.351 -1.679 -1.139 1.633 0.093 H6 0DC 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0DC OP3 P SING N N 1 0DC OP3 HOP3 SING N N 2 0DC P OP1 DOUB N N 3 0DC P OP2 SING N N 4 0DC P "O5'" SING N N 5 0DC OP2 HOP2 SING N N 6 0DC "O5'" "C5'" SING N N 7 0DC "C5'" "C4'" SING N N 8 0DC "C5'" "H5'" SING N N 9 0DC "C5'" "H5''" SING N N 10 0DC "C4'" "O4'" SING N N 11 0DC "C4'" "C3'" SING N N 12 0DC "C4'" "H4'" SING N N 13 0DC "O4'" "C1'" SING N N 14 0DC "C3'" "O3'" SING N N 15 0DC "C3'" "C2'" SING N N 16 0DC "C3'" "H3'" SING N N 17 0DC "O3'" "HO3'" SING N N 18 0DC "C2'" "C1'" SING N N 19 0DC "C2'" "H2'" SING N N 20 0DC "C2'" "H2''" SING N N 21 0DC "C1'" N1 SING N N 22 0DC "C1'" "H1'" SING N N 23 0DC N1 C2 SING N N 24 0DC N1 C6 SING N N 25 0DC C2 O2 DOUB N N 26 0DC C2 N3 SING N N 27 0DC N3 C4 DOUB N N 28 0DC C4 N4 SING N N 29 0DC C4 C5 SING N N 30 0DC N4 H41 SING N N 31 0DC N4 H42 SING N N 32 0DC C5 C6 DOUB N N 33 0DC C5 H5 SING N N 34 0DC C6 H6 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0DC SMILES ACDLabs 11.02 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CC2O" 0DC SMILES_CANONICAL CACTVS 3.352 "NC1=NC(=O)N(C=C1)[C@@H]2C[C@@H](O)[C@H](CO[P](O)(O)=O)O2" 0DC SMILES CACTVS 3.352 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2" 0DC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@H]([C@@H](O[C@@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O" 0DC SMILES "OpenEye OEToolkits" 1.7.0 "C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)O)O" 0DC InChI InChI 1.03 "InChI=1S/C9H14N3O7P/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(19-8)4-18-20(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m1/s1" 0DC InChIKey InChI 1.03 NCMVOABPESMRCP-CHKWXVPMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0DC "SYSTEMATIC NAME" ACDLabs 11.02 "4-amino-1-(2-deoxy-5-O-phosphono-beta-L-erythro-pentofuranosyl)pyrimidin-2(1H)-one" 0DC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2S,3R,5S)-5-(4-azanyl-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0DC "Create component" 2009-07-16 RCSB 0DC "Modify descriptor" 2011-06-04 RCSB #