data_0DN # _chem_comp.id 0DN _chem_comp.name "5'-deoxy-5'-fluorothymidine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 F N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-12-14 _chem_comp.pdbx_modified_date 2012-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.220 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0DN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3UXM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0DN O4 O4 O 0 1 N N N 7.371 2.297 16.431 0.146 -1.004 -1.442 O4 0DN 1 0DN C6 C6 C 0 1 N N N 6.733 1.369 16.988 1.069 -0.564 -0.784 C6 0DN 2 0DN N2 N2 N 0 1 N N N 5.954 0.523 16.280 2.326 -0.959 -1.057 N2 0DN 3 0DN C7 C7 C 0 1 N N N 5.306 -0.500 16.892 3.360 -0.480 -0.336 C7 0DN 4 0DN O3 O3 O 0 1 N N N 4.590 -1.291 16.243 4.498 -0.836 -0.583 O3 0DN 5 0DN C8 C8 C 0 1 N N N 5.423 -0.669 18.366 3.111 0.441 0.709 C8 0DN 6 0DN C10 C10 C 0 1 N N N 4.737 -1.781 19.117 4.249 0.992 1.529 C10 0DN 7 0DN C9 C9 C 0 1 N N N 6.223 0.219 19.051 1.840 0.820 0.961 C9 0DN 8 0DN N1 N1 N 0 1 N N N 6.842 1.232 18.398 0.819 0.315 0.204 N1 0DN 9 0DN C4 C4 C 0 1 N N R 7.709 2.165 19.119 -0.560 0.730 0.474 C4 0DN 10 0DN C3 C3 C 0 1 N N N 7.089 3.057 20.214 -1.158 1.444 -0.759 C3 0DN 11 0DN C2 C2 C 0 1 N N S 8.215 3.180 21.233 -2.631 0.979 -0.785 C2 0DN 12 0DN O2 O2 O 0 1 N N N 8.996 4.346 20.905 -3.511 2.096 -0.646 O2 0DN 13 0DN O1 O1 O 0 1 N N N 8.700 1.381 19.747 -1.403 -0.426 0.675 O1 0DN 14 0DN C1 C1 C 0 1 N N S 9.088 1.945 20.991 -2.749 0.039 0.436 C1 0DN 15 0DN C5 C5 C 0 1 N N N 9.031 0.858 22.066 -3.670 -1.140 0.113 C5 0DN 16 0DN F1 F1 F 0 1 N N N 7.727 0.567 22.369 -3.796 -1.955 1.243 F1 0DN 17 0DN H1 H1 H 0 1 N N N 5.854 0.652 15.293 2.489 -1.590 -1.775 H1 0DN 18 0DN H2 H2 H 0 1 N N N 4.971 -1.699 20.189 5.189 0.570 1.176 H2 0DN 19 0DN H3 H3 H 0 1 N N N 3.649 -1.704 18.972 4.277 2.077 1.429 H3 0DN 20 0DN H4 H4 H 0 1 N N N 5.090 -2.751 18.738 4.103 0.728 2.577 H4 0DN 21 0DN H5 H5 H 0 1 N N N 6.358 0.107 20.117 1.630 1.522 1.755 H5 0DN 22 0DN H6 H6 H 0 1 N N N 8.188 2.830 18.385 -0.595 1.382 1.346 H6 0DN 23 0DN H7 H7 H 0 1 N N N 6.811 4.042 19.811 -1.101 2.526 -0.639 H7 0DN 24 0DN H8 H8 H 0 1 N N N 6.204 2.579 20.659 -0.643 1.132 -1.668 H8 0DN 25 0DN H9 H9 H 0 1 N N N 7.827 3.202 22.262 -2.845 0.437 -1.706 H9 0DN 26 0DN H10 H10 H 0 1 N N N 9.705 4.439 21.531 -3.434 2.748 -1.357 H10 0DN 27 0DN H11 H11 H 0 1 N N N 10.131 2.286 20.919 -3.122 0.586 1.302 H11 0DN 28 0DN H12 H12 H 0 1 N N N 9.530 -0.049 21.694 -4.652 -0.765 -0.177 H12 0DN 29 0DN H13 H13 H 0 1 N N N 9.545 1.214 22.971 -3.245 -1.718 -0.707 H13 0DN 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0DN O3 C7 DOUB N N 1 0DN N2 C7 SING N N 2 0DN N2 C6 SING N N 3 0DN O4 C6 DOUB N N 4 0DN C7 C8 SING N N 5 0DN C6 N1 SING N N 6 0DN C8 C9 DOUB N N 7 0DN C8 C10 SING N N 8 0DN N1 C9 SING N N 9 0DN N1 C4 SING N N 10 0DN C4 O1 SING N N 11 0DN C4 C3 SING N N 12 0DN O1 C1 SING N N 13 0DN C3 C2 SING N N 14 0DN O2 C2 SING N N 15 0DN C1 C2 SING N N 16 0DN C1 C5 SING N N 17 0DN C5 F1 SING N N 18 0DN N2 H1 SING N N 19 0DN C10 H2 SING N N 20 0DN C10 H3 SING N N 21 0DN C10 H4 SING N N 22 0DN C9 H5 SING N N 23 0DN C4 H6 SING N N 24 0DN C3 H7 SING N N 25 0DN C3 H8 SING N N 26 0DN C2 H9 SING N N 27 0DN O2 H10 SING N N 28 0DN C1 H11 SING N N 29 0DN C5 H12 SING N N 30 0DN C5 H13 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0DN SMILES ACDLabs 12.01 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2)CF" 0DN InChI InChI 1.03 "InChI=1S/C10H13FN2O4/c1-5-4-13(10(16)12-9(5)15)8-2-6(14)7(3-11)17-8/h4,6-8,14H,2-3H2,1H3,(H,12,15,16)/t6-,7+,8+/m0/s1" 0DN InChIKey InChI 1.03 MYWVPKQWFIVGJZ-XLPZGREQSA-N 0DN SMILES_CANONICAL CACTVS 3.370 "CC1=CN([C@H]2C[C@H](O)[C@@H](CF)O2)C(=O)NC1=O" 0DN SMILES CACTVS 3.370 "CC1=CN([CH]2C[CH](O)[CH](CF)O2)C(=O)NC1=O" 0DN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CF)O" 0DN SMILES "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CF)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0DN "SYSTEMATIC NAME" ACDLabs 12.01 "5'-deoxy-5'-fluorothymidine" 0DN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[(2R,4S,5S)-5-(fluoranylmethyl)-4-oxidanyl-oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0DN "Create component" 2011-12-14 RCSB #