data_0FX # _chem_comp.id 0FX _chem_comp.name dTDP-4-amino-4,6-dideoxyglucose _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H27 N3 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-01-04 _chem_comp.pdbx_modified_date 2012-01-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 547.345 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0FX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VBI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0FX O4P O4P O 0 1 N N N -16.148 -1.581 17.120 -3.918 -2.847 -0.434 O4P 0FX 1 0FX P2 P2 P 0 1 N N N -17.176 -2.580 16.602 -3.386 -1.539 0.340 P2 0FX 2 0FX O3P O3P O 0 1 N N N -16.701 -3.859 15.948 -3.681 -1.666 1.785 O3P 0FX 3 0FX O1G O1G O 0 1 N N N -18.001 -1.745 15.482 -4.123 -0.232 -0.245 O1G 0FX 4 0FX C1G C1G C 0 1 N N R -18.744 -0.570 15.795 -5.529 -0.007 -0.113 C1G 0FX 5 0FX C2G C2G C 0 1 N N R -19.922 -0.246 14.881 -6.028 0.812 -1.306 C2G 0FX 6 0FX O2G O2G O 0 1 N N N -20.638 -1.405 14.444 -5.722 0.123 -2.520 O2G 0FX 7 0FX C3G C3G C 0 1 N N S -19.341 0.469 13.661 -5.336 2.179 -1.303 C3G 0FX 8 0FX O3G O3G O 0 1 N N N -20.404 0.914 12.814 -5.851 2.978 -2.370 O3G 0FX 9 0FX C4G C4G C 0 1 N N S -18.478 1.654 14.092 -5.609 2.873 0.035 C4G 0FX 10 0FX N4A N4A N 0 1 N N N -17.856 2.140 12.870 -4.888 4.153 0.079 N4A 0FX 11 0FX C5G C5G C 0 1 N N R -17.406 1.244 15.116 -5.125 1.974 1.176 C5G 0FX 12 0FX C6G C6G C 0 1 N N N -16.505 2.370 15.625 -5.448 2.635 2.518 C6G 0FX 13 0FX O5G O5G O 0 1 N N N -17.989 0.563 16.230 -5.785 0.709 1.096 O5G 0FX 14 0FX OPP OPP O 0 1 N N N -18.199 -2.966 17.770 -1.797 -1.398 0.126 OPP 0FX 15 0FX P P P 0 1 N N N -19.527 -3.828 17.622 -0.515 -2.165 0.729 P 0FX 16 0FX O1P O1P O 0 1 N N N -20.149 -3.782 19.005 -0.263 -1.680 2.243 O1P 0FX 17 0FX O2P O2P O 0 1 N N N -20.308 -3.391 16.413 -0.761 -3.624 0.712 O2P 0FX 18 0FX O5 O5 O 0 1 N N N -18.865 -5.300 17.439 0.781 -1.828 -0.165 O5 0FX 19 0FX C5 C5 C 0 1 N N N -18.444 -6.065 18.583 2.055 -2.439 0.050 C5 0FX 20 0FX C4 C4 C 0 1 N N R -18.609 -7.582 18.475 3.059 -1.897 -0.969 C4 0FX 21 0FX O4 O4 O 0 1 N N N -19.955 -7.936 18.729 3.311 -0.495 -0.738 O4 0FX 22 0FX C3 C3 C 0 1 N N S -18.412 -8.240 17.120 4.449 -2.553 -0.768 C3 0FX 23 0FX O3 O3 O 0 1 N N N -17.054 -8.499 16.769 4.539 -3.787 -1.483 O3 0FX 24 0FX C2 C2 C 0 1 N N N -19.270 -9.496 17.141 5.399 -1.492 -1.375 C2 0FX 25 0FX C1 C1 C 0 1 N N R -20.493 -8.941 17.867 4.576 -0.189 -1.350 C1 0FX 26 0FX N11 N11 N 0 1 N N N -21.559 -8.382 17.012 5.277 0.828 -0.563 N11 0FX 27 0FX C61 C61 C 0 1 N N N -21.819 -7.051 16.926 5.736 1.962 -1.176 C61 0FX 28 0FX C51 C51 C 0 1 N N N -22.871 -6.603 16.120 6.382 2.899 -0.451 C51 0FX 29 0FX C5A C5A C 0 1 N N N -23.255 -5.145 15.949 6.895 4.155 -1.109 C5A 0FX 30 0FX C21 C21 C 0 1 N N N -22.317 -9.260 16.312 5.459 0.641 0.757 C21 0FX 31 0FX O21 O21 O 0 1 N N N -22.128 -10.499 16.379 5.039 -0.371 1.283 O21 0FX 32 0FX N31 N31 N 0 1 N N N -23.321 -8.859 15.501 6.099 1.560 1.504 N31 0FX 33 0FX C41 C41 C 0 1 N N N -23.608 -7.541 15.391 6.571 2.688 0.936 C41 0FX 34 0FX O41 O41 O 0 1 N N N -24.562 -7.195 14.654 7.151 3.520 1.611 O41 0FX 35 0FX H1 H1 H 0 1 N N N -15.273 -1.912 16.955 -3.759 -2.832 -1.387 H1 0FX 36 0FX H2 H2 H 0 1 N N N -19.264 -0.866 16.718 -6.049 -0.965 -0.086 H2 0FX 37 0FX H3 H3 H 0 1 N N N -20.600 0.443 15.406 -7.107 0.950 -1.227 H3 0FX 38 0FX H4 H4 H 0 1 N N N -20.546 -2.096 15.089 -6.126 -0.753 -2.588 H4 0FX 39 0FX H5 H5 H 0 1 N N N -18.705 -0.242 13.114 -4.262 2.044 -1.431 H5 0FX 40 0FX H6 H6 H 0 1 N N N -20.934 0.170 12.552 -5.713 2.597 -3.248 H6 0FX 41 0FX H7 H7 H 0 1 N N N -19.120 2.432 14.531 -6.679 3.053 0.141 H7 0FX 42 0FX H8 H8 H 0 1 N N N -17.272 2.923 13.082 -5.053 4.630 0.953 H8 0FX 43 0FX H9 H9 H 0 1 N N N -17.303 1.412 12.465 -3.901 4.018 -0.079 H9 0FX 44 0FX H11 H11 H 0 1 N N N -16.747 0.530 14.601 -4.048 1.829 1.092 H11 0FX 45 0FX H12 H12 H 0 1 N N N -15.782 1.963 16.347 -6.525 2.780 2.601 H12 0FX 46 0FX H13 H13 H 0 1 N N N -15.965 2.819 14.778 -5.104 1.995 3.330 H13 0FX 47 0FX H14 H14 H 0 1 N N N -17.120 3.138 16.116 -4.945 3.600 2.578 H14 0FX 48 0FX H15 H15 H 0 1 N N N -21.038 -3.454 18.942 -0.095 -0.732 2.330 H15 0FX 49 0FX H16 H16 H 0 1 N N N -17.378 -5.854 18.755 2.401 -2.211 1.058 H16 0FX 50 0FX H17 H17 H 0 1 N N N -19.030 -5.724 19.450 1.964 -3.519 -0.068 H17 0FX 51 0FX H18 H18 H 0 1 N N N -17.942 -8.064 19.205 2.698 -2.060 -1.985 H18 0FX 52 0FX H19 H19 H 0 1 N N N -18.842 -7.565 16.365 4.658 -2.702 0.291 H19 0FX 53 0FX H20 H20 H 0 1 N N N -16.565 -7.684 16.771 5.417 -4.190 -1.462 H20 0FX 54 0FX H21 H21 H 0 1 N N N -19.516 -9.844 16.127 6.295 -1.388 -0.764 H21 0FX 55 0FX H22 H22 H 0 1 N N N -18.792 -10.312 17.703 5.662 -1.757 -2.399 H22 0FX 56 0FX H23 H23 H 0 1 N N N -20.921 -9.750 18.477 4.418 0.169 -2.367 H23 0FX 57 0FX H24 H24 H 0 1 N N N -21.217 -6.343 17.477 5.583 2.106 -2.236 H24 0FX 58 0FX H25 H25 H 0 1 N N N -22.602 -4.518 16.573 6.124 4.924 -1.074 H25 0FX 59 0FX H26 H26 H 0 1 N N N -23.140 -4.857 14.894 7.782 4.505 -0.581 H26 0FX 60 0FX H27 H27 H 0 1 N N N -24.302 -5.003 16.256 7.150 3.943 -2.147 H27 0FX 61 0FX H28 H28 H 0 1 N N N -23.849 -9.533 14.985 6.221 1.410 2.454 H28 0FX 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0FX O3G C3G SING N N 1 0FX N4A C4G SING N N 2 0FX C3G C4G SING N N 3 0FX C3G C2G SING N N 4 0FX C4G C5G SING N N 5 0FX O2G C2G SING N N 6 0FX O41 C41 DOUB N N 7 0FX C2G C1G SING N N 8 0FX C5G C6G SING N N 9 0FX C5G O5G SING N N 10 0FX C41 N31 SING N N 11 0FX C41 C51 SING N N 12 0FX O1G C1G SING N N 13 0FX O1G P2 SING N N 14 0FX N31 C21 SING N N 15 0FX C1G O5G SING N N 16 0FX O3P P2 DOUB N N 17 0FX C5A C51 SING N N 18 0FX C51 C61 DOUB N N 19 0FX C21 O21 DOUB N N 20 0FX C21 N11 SING N N 21 0FX O2P P DOUB N N 22 0FX P2 O4P SING N N 23 0FX P2 OPP SING N N 24 0FX O3 C3 SING N N 25 0FX C61 N11 SING N N 26 0FX N11 C1 SING N N 27 0FX C3 C2 SING N N 28 0FX C3 C4 SING N N 29 0FX C2 C1 SING N N 30 0FX O5 P SING N N 31 0FX O5 C5 SING N N 32 0FX P OPP SING N N 33 0FX P O1P SING N N 34 0FX C1 O4 SING N N 35 0FX C4 C5 SING N N 36 0FX C4 O4 SING N N 37 0FX O4P H1 SING N N 38 0FX C1G H2 SING N N 39 0FX C2G H3 SING N N 40 0FX O2G H4 SING N N 41 0FX C3G H5 SING N N 42 0FX O3G H6 SING N N 43 0FX C4G H7 SING N N 44 0FX N4A H8 SING N N 45 0FX N4A H9 SING N N 46 0FX C5G H11 SING N N 47 0FX C6G H12 SING N N 48 0FX C6G H13 SING N N 49 0FX C6G H14 SING N N 50 0FX O1P H15 SING N N 51 0FX C5 H16 SING N N 52 0FX C5 H17 SING N N 53 0FX C4 H18 SING N N 54 0FX C3 H19 SING N N 55 0FX O3 H20 SING N N 56 0FX C2 H21 SING N N 57 0FX C2 H22 SING N N 58 0FX C1 H23 SING N N 59 0FX C61 H24 SING N N 60 0FX C5A H25 SING N N 61 0FX C5A H26 SING N N 62 0FX C5A H27 SING N N 63 0FX N31 H28 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0FX SMILES ACDLabs 12.01 "O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(N)C(O)C3O)C)O)O)C" 0FX InChI InChI 1.03 "InChI=1S/C16H27N3O14P2/c1-6-4-19(16(24)18-14(6)23)10-3-8(20)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(17)7(2)30-15/h4,7-13,15,20-22H,3,5,17H2,1-2H3,(H,25,26)(H,27,28)(H,18,23,24)/t7-,8+,9-,10-,11-,12+,13-,15-/m1/s1" 0FX InChIKey InChI 1.03 UIVJXHWSIFBBCY-LPGAPTBISA-N 0FX SMILES_CANONICAL CACTVS 3.370 "C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](O)[C@@H]1N" 0FX SMILES CACTVS 3.370 "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)[CH]1N" 0FX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O)N" 0FX SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0FX "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4S,5S,6R)-5-amino-3,4-dihydroxy-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" 0FX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4S,5S,6R)-5-azanyl-6-methyl-3,4-bis(oxidanyl)oxan-2-yl] [[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0FX "Create component" 2012-01-04 RCSB #