data_0H0 # _chem_comp.id 0H0 _chem_comp.name "Carbohydrate component from a pentavalent N-acetylneuraminic acid conjugate" _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C15 H27 N O9" _chem_comp.mon_nstd_parent_comp_id SIA _chem_comp.pdbx_synonyms "(1R,2R)-1-[(2R,3R,4S,6R)-6-[bis(oxidanyl)methyl]-3-(1-hydroxyethylamino)-4-oxidanyl-6-propoxy-oxan-2-yl]propane-1,2,3-triol; (2R,4S,5R,6R)-5-acetamido-2-butoxy-4-oxidanyl-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-05 _chem_comp.pdbx_modified_date 2021-10-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 365.376 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0H0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OJ7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0H0 O2 O1 O 0 1 N N N 250.202 183.967 312.978 -2.542 0.720 0.823 O2 0H0 1 0H0 C12 C1 C 0 1 N N N 250.464 184.514 314.294 -3.027 0.707 -0.521 C12 0H0 2 0H0 C13 C2 C 0 1 N N N 251.295 183.464 315.158 -4.545 0.516 -0.514 C13 0H0 3 0H0 C14 C3 C 0 1 N N N 250.695 183.267 316.580 -5.064 0.502 -1.953 C14 0H0 4 0H0 C1 C4 C 0 1 N N N 248.102 185.108 312.621 -0.717 0.711 2.379 C1 0H0 5 0H0 C2 C5 C 0 1 N N R 249.472 184.794 312.016 -1.118 0.772 0.927 C2 0H0 6 0H0 C3 C6 C 0 1 N N N 249.335 184.060 310.684 -0.609 2.079 0.312 C3 0H0 7 0H0 C4 C7 C 0 1 N N S 248.970 184.974 309.548 0.922 2.100 0.373 C4 0H0 8 0H0 C5 C8 C 0 1 N N R 249.947 186.095 309.429 1.468 0.865 -0.350 C5 0H0 9 0H0 C6 C9 C 0 1 N N R 249.815 186.911 310.702 0.878 -0.394 0.290 C6 0H0 10 0H0 C7 C10 C 0 1 N N R 250.607 188.211 310.761 1.372 -1.630 -0.465 C7 0H0 11 0H0 C8 C11 C 0 1 N N R 250.564 188.790 312.193 0.687 -2.878 0.096 C8 0H0 12 0H0 C9 C12 C 0 1 N N N 250.660 190.329 312.181 1.181 -4.113 -0.660 C9 0H0 13 0H0 C10 C13 C 0 1 N N N 250.389 186.980 307.001 3.687 1.524 -1.110 C10 0H0 14 0H0 C11 C14 C 0 1 N N N 249.841 187.863 305.837 5.189 1.494 -0.991 C11 0H0 15 0H0 N5 N1 N 0 1 N N N 249.584 186.911 308.215 2.928 0.836 -0.235 N5 0H0 16 0H0 O1A O2 O 0 1 N N N 247.764 186.318 312.872 -1.559 0.562 3.232 O1A 0H0 17 0H0 O1B O3 O 0 1 N N N 247.305 184.161 312.928 0.575 0.822 2.723 O1B 0H0 18 0H0 O4 O4 O 0 1 N N N 248.861 184.271 308.268 1.409 3.282 -0.265 O4 0H0 19 0H0 O6 O5 O 0 1 N N N 250.218 186.072 311.853 -0.548 -0.336 0.228 O6 0H0 20 0H0 O7 O6 O 0 1 N N N 251.932 187.949 310.370 1.059 -1.497 -1.852 O7 0H0 21 0H0 O8 O7 O 0 1 N N N 249.373 188.469 312.872 1.000 -3.010 1.484 O8 0H0 22 0H0 O9 O8 O 0 1 N N N 251.916 190.661 311.674 0.457 -5.263 -0.217 O9 0H0 23 0H0 O10 O9 O 0 1 N N N 251.417 186.381 306.912 3.162 2.168 -1.994 O10 0H0 24 0H0 C15 C15 C 0 1 N N N ? ? ? -6.582 0.310 -1.946 C15 0H0 25 0H0 H1 H1 H 0 1 N N N 251.042 185.444 314.194 -2.782 1.653 -1.004 H1 0H0 26 0H0 H2 H2 H 0 1 N N N 249.510 184.728 314.798 -2.560 -0.111 -1.068 H2 0H0 27 0H0 H3 H3 H 0 1 N N N 251.294 182.496 314.636 -4.789 -0.430 -0.031 H3 0H0 28 0H0 H4 H4 H 0 1 N N N 252.329 183.826 315.257 -5.012 1.334 0.033 H4 0H0 29 0H0 H5 H5 H 0 1 N N N 251.219 182.607 317.287 -4.819 1.448 -2.436 H5 0H0 30 0H0 H6 H6 H 0 1 N N N 250.309 184.146 317.116 -4.596 -0.317 -2.500 H6 0H0 31 0H0 H7 H7 H 0 1 N N N 250.294 183.575 310.450 -0.933 2.143 -0.727 H7 0H0 32 0H0 H8 H8 H 0 1 N N N 248.552 183.294 310.784 -1.008 2.925 0.872 H8 0H0 33 0H0 H9 H9 H 0 1 N N N 247.988 185.412 309.779 1.245 2.086 1.413 H9 0H0 34 0H0 H10 H10 H 0 1 N N N 250.971 185.705 309.334 1.186 0.905 -1.403 H10 0H0 35 0H0 H11 H11 H 0 1 N N N 248.752 187.166 310.823 1.195 -0.454 1.332 H11 0H0 36 0H0 H12 H12 H 0 1 N N N 250.143 188.938 310.078 2.451 -1.722 -0.343 H12 0H0 37 0H0 H13 H13 H 0 1 N N N 251.429 188.397 312.747 -0.392 -2.785 -0.026 H13 0H0 38 0H0 H14 H14 H 0 1 N N N 249.872 190.751 311.540 1.022 -3.973 -1.729 H14 0H0 39 0H0 H15 H15 H 0 1 N N N 250.551 190.721 313.203 2.244 -4.257 -0.466 H15 0H0 40 0H0 H16 H16 H 0 1 N N N 250.538 187.824 304.987 5.541 0.467 -1.088 H16 0H0 41 0H0 H17 H17 H 0 1 N N N 248.857 187.485 305.522 5.628 2.105 -1.780 H17 0H0 42 0H0 H18 H18 H 0 1 N N N 249.741 188.903 306.182 5.485 1.889 -0.019 H18 0H0 43 0H0 H19 H19 H 0 1 N N N 248.736 187.440 308.244 3.348 0.321 0.472 H19 0H0 44 0H0 H20 H20 H 0 1 N N N 246.522 184.522 313.326 0.784 0.777 3.667 H20 0H0 45 0H0 H21 H21 H 0 1 N N N 248.630 184.890 307.585 1.096 4.104 0.137 H21 0H0 46 0H0 H22 H22 H 0 1 N N N 252.437 188.753 310.403 0.113 -1.409 -2.036 H22 0H0 47 0H0 H23 H23 H 0 1 N N N 249.085 187.601 312.614 1.946 -3.098 1.666 H23 0H0 48 0H0 H24 H24 H 0 1 N N N 252.010 191.606 311.652 0.718 -6.085 -0.654 H24 0H0 49 0H0 H25 H25 H 0 1 N N N ? ? ? -6.826 -0.636 -1.463 H25 0H0 50 0H0 H26 H26 H 0 1 N N N ? ? ? -7.049 1.129 -1.399 H26 0H0 51 0H0 H27 H27 H 0 1 N N N ? ? ? -6.951 0.301 -2.971 H27 0H0 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0H0 O2 C12 SING N N 1 0H0 O2 C2 SING N N 2 0H0 C12 C13 SING N N 3 0H0 C13 C14 SING N N 4 0H0 C2 C3 SING N N 5 0H0 C2 O6 SING N N 6 0H0 C3 C4 SING N N 7 0H0 C4 C5 SING N N 8 0H0 C4 O4 SING N N 9 0H0 C5 C6 SING N N 10 0H0 C5 N5 SING N N 11 0H0 C6 C7 SING N N 12 0H0 C6 O6 SING N N 13 0H0 C7 C8 SING N N 14 0H0 C7 O7 SING N N 15 0H0 C8 C9 SING N N 16 0H0 C8 O8 SING N N 17 0H0 C9 O9 SING N N 18 0H0 C10 C11 SING N N 19 0H0 C10 N5 SING N N 20 0H0 C10 O10 DOUB N N 21 0H0 C2 C1 SING N N 22 0H0 C1 O1A DOUB N N 23 0H0 C1 O1B SING N N 24 0H0 C14 C15 SING N N 25 0H0 C12 H1 SING N N 26 0H0 C12 H2 SING N N 27 0H0 C13 H3 SING N N 28 0H0 C13 H4 SING N N 29 0H0 C14 H5 SING N N 30 0H0 C14 H6 SING N N 31 0H0 C3 H7 SING N N 32 0H0 C3 H8 SING N N 33 0H0 C4 H9 SING N N 34 0H0 C5 H10 SING N N 35 0H0 C6 H11 SING N N 36 0H0 C7 H12 SING N N 37 0H0 C8 H13 SING N N 38 0H0 C9 H14 SING N N 39 0H0 C9 H15 SING N N 40 0H0 C11 H16 SING N N 41 0H0 C11 H17 SING N N 42 0H0 C11 H18 SING N N 43 0H0 N5 H19 SING N N 44 0H0 O1B H20 SING N N 45 0H0 O4 H21 SING N N 46 0H0 O7 H22 SING N N 47 0H0 O8 H23 SING N N 48 0H0 O9 H24 SING N N 49 0H0 C15 H25 SING N N 50 0H0 C15 H26 SING N N 51 0H0 C15 H27 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0H0 InChI InChI 1.03 "InChI=1S/C15H27NO9/c1-3-4-5-24-15(14(22)23)6-9(19)11(16-8(2)18)13(25-15)12(21)10(20)7-17/h9-13,17,19-21H,3-7H2,1-2H3,(H,16,18)(H,22,23)/t9-,10+,11+,12+,13+,15+/m0/s1" 0H0 InChIKey InChI 1.03 HDYHZAZYSDVKLZ-FSTWUICMSA-N 0H0 SMILES_CANONICAL CACTVS 3.385 "CCCCO[C@@]1(C[C@H](O)[C@@H](NC(C)=O)[C@@H](O1)[C@H](O)[C@H](O)CO)C(O)=O" 0H0 SMILES CACTVS 3.385 "CCCCO[C]1(C[CH](O)[CH](NC(C)=O)[CH](O1)[CH](O)[CH](O)CO)C(O)=O" 0H0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O" 0H0 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCOC1(CC(C(C(O1)C(C(CO)O)O)NC(=O)C)O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id 0H0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S},5~{R},6~{R})-5-acetamido-2-butoxy-4-oxidanyl-6-[(1~{R},2~{R})-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 0H0 "(1R,2R)-1-[(2R,3R,4S,6R)-6-[bis(oxidanyl)methyl]-3-(1-hydroxyethylamino)-4-oxidanyl-6-propoxy-oxan-2-yl]propane-1,2,3-triol" PDB ? 2 0H0 "(2R,4S,5R,6R)-5-acetamido-2-butoxy-4-oxidanyl-6-[(1R,2R)-1,2,3-tris(oxidanyl)propyl]oxane-2-carboxylic acid" PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0H0 "Create component" 2021-06-05 PDBE 0H0 "Modify synonyms" 2021-06-05 PDBE 0H0 "Initial release" 2021-10-13 RCSB ##