data_0JM # _chem_comp.id 0JM _chem_comp.name ;(2S,5R,6R,7R)-6-{[(2R)-2-carboxy-2-phenylacetyl]amino}-7-hydroxy-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carbo xylic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C17 H20 N2 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Carbenicillin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-08-13 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 380.416 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0JM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GCQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0JM O5 O5 O 0 1 N N N 14.684 5.397 3.081 -4.147 -2.148 1.151 O5 0JM 1 0JM C16 C16 C 0 1 N N N 14.815 5.409 1.827 -4.058 -1.020 0.429 C16 0JM 2 0JM O1 O1 O 0 1 N N N 15.761 4.823 1.247 -5.051 -0.541 -0.066 O1 0JM 3 0JM C13 C13 C 0 1 N N S 13.832 6.139 0.934 -2.721 -0.352 0.235 C13 0JM 4 0JM C12 C12 C 0 1 N N N 13.000 7.263 1.632 -1.961 -1.092 -0.875 C12 0JM 5 0JM C14 C14 C 0 1 N N N 13.710 7.999 2.775 -2.827 -2.204 -1.470 C14 0JM 6 0JM C15 C15 C 0 1 N N N 11.661 6.755 2.159 -0.650 -1.667 -0.335 C15 0JM 7 0JM S1 S1 S 0 1 N N N 12.712 8.442 0.352 -1.626 0.205 -2.125 S1 0JM 8 0JM N2 N2 N 0 1 N N N 14.637 6.693 -0.189 -2.944 1.061 -0.042 N2 0JM 9 0JM C11 C11 C 0 1 N N R 14.255 8.091 -0.476 -2.008 1.629 -1.039 C11 0JM 10 0JM C10 C10 C 0 1 N N R 14.327 6.271 -1.569 -2.266 1.901 0.966 C10 0JM 11 0JM O4 O4 O 0 1 N N N 15.457 5.760 -2.270 -2.806 3.220 1.065 O4 0JM 12 0JM C9 C9 C 0 1 N N R 14.205 7.734 -1.961 -1.001 1.819 0.100 C9 0JM 13 0JM N1 N1 N 0 1 N N N 12.890 7.951 -2.539 -0.166 0.645 0.366 N1 0JM 14 0JM C8 C8 C 0 1 N N N 12.476 9.134 -3.018 1.152 0.679 0.087 C8 0JM 15 0JM O6 O6 O 0 1 N N N 13.148 10.161 -3.021 1.656 1.696 -0.341 O6 0JM 16 0JM C7 C7 C 0 1 N N R 11.065 9.153 -3.566 2.001 -0.547 0.306 C7 0JM 17 0JM C17 C17 C 0 1 N N N 10.977 10.085 -4.738 2.017 -0.890 1.774 C17 0JM 18 0JM O2 O2 O 0 1 N N N 9.870 10.607 -5.001 2.714 -1.952 2.207 O2 0JM 19 0JM O3 O3 O 0 1 N N N 12.021 10.300 -5.403 1.404 -0.209 2.561 O3 0JM 20 0JM C1 C1 C 0 1 Y N N 10.072 9.435 -2.474 3.407 -0.276 -0.162 C1 0JM 21 0JM C6 C6 C 0 1 Y N N 10.470 10.061 -1.284 3.962 -1.048 -1.165 C6 0JM 22 0JM C2 C2 C 0 1 Y N N 8.745 9.047 -2.627 4.140 0.749 0.407 C2 0JM 23 0JM C3 C3 C 0 1 Y N N 7.840 9.287 -1.601 5.429 0.998 -0.023 C3 0JM 24 0JM C4 C4 C 0 1 Y N N 8.250 9.911 -0.427 5.987 0.222 -1.022 C4 0JM 25 0JM C5 C5 C 0 1 Y N N 9.574 10.305 -0.251 5.252 -0.799 -1.595 C5 0JM 26 0JM H1 H1 H 0 1 N N N 15.391 4.894 3.469 -5.025 -2.540 1.248 H1 0JM 27 0JM H2 H2 H 0 1 N N N 13.123 5.402 0.527 -2.154 -0.437 1.162 H2 0JM 28 0JM H3 H3 H 0 1 N N N 13.909 7.296 3.597 -3.735 -1.771 -1.891 H3 0JM 29 0JM H4 H4 H 0 1 N N N 14.661 8.413 2.409 -2.272 -2.717 -2.255 H4 0JM 30 0JM H5 H5 H 0 1 N N N 13.070 8.816 3.138 -3.093 -2.915 -0.688 H5 0JM 31 0JM H6 H6 H 0 1 N N N 11.836 6.019 2.958 -0.749 -1.855 0.734 H6 0JM 32 0JM H7 H7 H 0 1 N N N 11.080 7.599 2.559 -0.424 -2.602 -0.848 H7 0JM 33 0JM H8 H8 H 0 1 N N N 11.101 6.280 1.340 0.157 -0.955 -0.506 H8 0JM 34 0JM H10 H10 H 0 1 N N N 15.013 8.845 -0.218 -2.337 2.529 -1.559 H10 0JM 35 0JM H11 H11 H 0 1 N N N 13.395 5.697 -1.679 -2.161 1.415 1.936 H11 0JM 36 0JM H12 H12 H 0 1 N N N 15.575 4.842 -2.056 -2.368 3.777 1.723 H12 0JM 37 0JM H13 H13 H 0 1 N N N 15.052 8.120 -2.548 -0.435 2.750 0.046 H13 0JM 38 0JM H14 H14 H 0 1 N N N 12.259 7.176 -2.582 -0.562 -0.156 0.743 H14 0JM 39 0JM H15 H15 H 0 1 N N N 10.853 8.141 -3.941 1.585 -1.382 -0.257 H15 0JM 40 0JM H16 H16 H 0 1 N N N 9.958 11.170 -5.761 2.695 -2.132 3.157 H16 0JM 41 0JM H17 H17 H 0 1 N N N 11.501 10.361 -1.168 3.388 -1.846 -1.613 H17 0JM 42 0JM H18 H18 H 0 1 N N N 8.421 8.563 -3.536 3.704 1.355 1.187 H18 0JM 43 0JM H19 H19 H 0 1 N N N 6.809 8.987 -1.716 6.002 1.799 0.421 H19 0JM 44 0JM H20 H20 H 0 1 N N N 7.531 10.092 0.359 6.995 0.417 -1.358 H20 0JM 45 0JM H21 H21 H 0 1 N N N 9.895 10.786 0.661 5.686 -1.403 -2.379 H21 0JM 46 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0JM O3 C17 DOUB N N 1 0JM O2 C17 SING N N 2 0JM C17 C7 SING N N 3 0JM C7 C8 SING N N 4 0JM C7 C1 SING N N 5 0JM O6 C8 DOUB N N 6 0JM C8 N1 SING N N 7 0JM C2 C1 DOUB Y N 8 0JM C2 C3 SING Y N 9 0JM N1 C9 SING N N 10 0JM C1 C6 SING Y N 11 0JM O4 C10 SING N N 12 0JM C9 C10 SING N N 13 0JM C9 C11 SING N N 14 0JM C3 C4 DOUB Y N 15 0JM C10 N2 SING N N 16 0JM C6 C5 DOUB Y N 17 0JM C11 N2 SING N N 18 0JM C11 S1 SING N N 19 0JM C4 C5 SING Y N 20 0JM N2 C13 SING N N 21 0JM S1 C12 SING N N 22 0JM C13 C12 SING N N 23 0JM C13 C16 SING N N 24 0JM O1 C16 DOUB N N 25 0JM C12 C15 SING N N 26 0JM C12 C14 SING N N 27 0JM C16 O5 SING N N 28 0JM O5 H1 SING N N 29 0JM C13 H2 SING N N 30 0JM C14 H3 SING N N 31 0JM C14 H4 SING N N 32 0JM C14 H5 SING N N 33 0JM C15 H6 SING N N 34 0JM C15 H7 SING N N 35 0JM C15 H8 SING N N 36 0JM C11 H10 SING N N 37 0JM C10 H11 SING N N 38 0JM O4 H12 SING N N 39 0JM C9 H13 SING N N 40 0JM N1 H14 SING N N 41 0JM C7 H15 SING N N 42 0JM O2 H16 SING N N 43 0JM C6 H17 SING N N 44 0JM C2 H18 SING N N 45 0JM C3 H19 SING N N 46 0JM C4 H20 SING N N 47 0JM C5 H21 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0JM SMILES ACDLabs 12.01 "O=C(O)C(c1ccccc1)C(=O)NC3C(O)N2C(C(=O)O)C(SC23)(C)C" 0JM InChI InChI 1.03 "InChI=1S/C17H20N2O6S/c1-17(2)11(16(24)25)19-13(21)10(14(19)26-17)18-12(20)9(15(22)23)8-6-4-3-5-7-8/h3-7,9-11,13-14,21H,1-2H3,(H,18,20)(H,22,23)(H,24,25)/t9-,10-,11+,13-,14-/m1/s1" 0JM InChIKey InChI 1.03 ASNJKAXIMWOZDG-KHQUWSPVSA-N 0JM SMILES_CANONICAL CACTVS 3.370 "CC1(C)S[C@@H]2[C@H](NC(=O)[C@H](C(O)=O)c3ccccc3)[C@@H](O)N2[C@H]1C(O)=O" 0JM SMILES CACTVS 3.370 "CC1(C)S[CH]2[CH](NC(=O)[CH](C(O)=O)c3ccccc3)[CH](O)N2[CH]1C(O)=O" 0JM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1([C@@H](N2[C@@H]([C@H]([C@H]2S1)NC(=O)[C@@H](c3ccccc3)C(=O)O)O)C(=O)O)C" 0JM SMILES "OpenEye OEToolkits" 1.7.6 "CC1(C(N2C(C(C2S1)NC(=O)C(c3ccccc3)C(=O)O)O)C(=O)O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0JM "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5R,6R,7R)-6-{[(2R)-2-carboxy-2-phenylacetyl]amino}-7-hydroxy-3,3-dimethyl-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" 0JM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,5R,6R,7R)-3,3-dimethyl-7-oxidanyl-6-[[(2R)-3-oxidanyl-3-oxidanylidene-2-phenyl-propanoyl]amino]-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0JM "Create component" 2012-08-13 RCSB 0JM "Initial release" 2012-12-14 RCSB 0JM "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0JM _pdbx_chem_comp_synonyms.name Carbenicillin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##