data_0MI # _chem_comp.id 0MI _chem_comp.name "1-[(2~{R},4~{S},5~{R})-5-[[(azanylidene-$l^{4}-azanylidene)amino]methyl]-4-oxidanyl-oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-14 _chem_comp.pdbx_modified_date 2021-09-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 268.249 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0MI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 7N7U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0MI N1 N1 N 0 1 N N N 8.263 -76.644 14.594 ? ? ? N1 0MI 1 0MI C7 C1 C 0 1 N N N 7.829 -76.680 16.009 ? ? ? C7 0MI 2 0MI C8 C2 C 0 1 N N N 6.679 -78.141 20.575 ? ? ? C8 0MI 3 0MI N2 N2 N 1 1 N N N 7.774 -75.854 13.713 ? ? ? N2 0MI 4 0MI C9 C3 C 0 1 N N N 4.507 -76.999 20.544 ? ? ? C9 0MI 5 0MI O1 O1 O 0 1 N N N 8.761 -76.397 18.203 ? ? ? O1 0MI 6 0MI C1 C4 C 0 1 N N N 5.024 -76.108 19.535 ? ? ? C1 0MI 7 0MI C5 C5 C 0 1 N N S 8.953 -78.599 17.311 ? ? ? C5 0MI 8 0MI C6 C6 C 0 1 N N R 8.925 -77.109 16.963 ? ? ? C6 0MI 9 0MI N3 N3 N -1 1 N N N 7.243 -75.072 13.036 ? ? ? N3 0MI 10 0MI C4 C7 C 0 1 N N N 9.065 -78.635 18.824 ? ? ? C4 0MI 11 0MI C3 C8 C 0 1 N N R 8.537 -77.291 19.269 ? ? ? C3 0MI 12 0MI O3 O2 O 0 1 N N N 3.389 -76.941 21.009 ? ? ? O3 0MI 13 0MI C2 C9 C 0 1 N N N 6.281 -76.297 19.111 ? ? ? C2 0MI 14 0MI N4 N4 N 0 1 N N N 5.385 -77.961 20.980 ? ? ? N4 0MI 15 0MI N N5 N 0 1 N N N 7.109 -77.262 19.612 ? ? ? N 0MI 16 0MI C C10 C 0 1 N N N 4.154 -75.010 19.036 ? ? ? C 0MI 17 0MI O O3 O 0 1 N N N 10.140 -79.211 16.818 ? ? ? O 0MI 18 0MI O2 O4 O 0 1 N N N 7.404 -78.966 21.078 ? ? ? O2 0MI 19 0MI H1 H1 H 0 1 N N N 7.491 -75.673 16.296 ? ? ? H1 0MI 20 0MI H2 H2 H 0 1 N N N 6.991 -77.387 16.099 ? ? ? H2 0MI 21 0MI H3 H3 H 0 1 N N N 8.039 -79.104 16.966 ? ? ? H3 0MI 22 0MI H4 H4 H 0 1 N N N 9.895 -76.844 16.517 ? ? ? H4 0MI 23 0MI H5 H5 H 0 1 N N N 6.609 -74.498 13.554 ? ? ? H5 0MI 24 0MI H6 H6 H 0 1 N N N 8.456 -79.451 19.241 ? ? ? H6 0MI 25 0MI H7 H7 H 0 1 N N N 10.112 -78.764 19.134 ? ? ? H7 0MI 26 0MI H8 H8 H 0 1 N N N 9.117 -76.969 20.147 ? ? ? H8 0MI 27 0MI H9 H9 H 0 1 N N N 6.660 -75.652 18.332 ? ? ? H9 0MI 28 0MI H10 H10 H 0 1 N N N 5.041 -78.599 21.669 ? ? ? H10 0MI 29 0MI H11 H11 H 0 1 N N N 3.174 -75.064 19.532 ? ? ? H11 0MI 30 0MI H12 H12 H 0 1 N N N 4.624 -74.040 19.258 ? ? ? H12 0MI 31 0MI H13 H13 H 0 1 N N N 4.021 -75.113 17.949 ? ? ? H13 0MI 32 0MI H14 H14 H 0 1 N N N 10.138 -80.134 17.044 ? ? ? H14 0MI 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0MI N3 N2 DOUB N N 1 0MI N2 N1 DOUB N N 2 0MI N1 C7 SING N N 3 0MI C7 C6 SING N N 4 0MI O C5 SING N N 5 0MI C6 C5 SING N N 6 0MI C6 O1 SING N N 7 0MI C5 C4 SING N N 8 0MI O1 C3 SING N N 9 0MI C4 C3 SING N N 10 0MI C C1 SING N N 11 0MI C2 C1 DOUB N N 12 0MI C2 N SING N N 13 0MI C3 N SING N N 14 0MI C1 C9 SING N N 15 0MI N C8 SING N N 16 0MI C9 N4 SING N N 17 0MI C9 O3 DOUB N N 18 0MI C8 N4 SING N N 19 0MI C8 O2 DOUB N N 20 0MI C7 H1 SING N N 21 0MI C7 H2 SING N N 22 0MI C5 H3 SING N N 23 0MI C6 H4 SING N N 24 0MI N3 H5 SING N N 25 0MI C4 H6 SING N N 26 0MI C4 H7 SING N N 27 0MI C3 H8 SING N N 28 0MI C2 H9 SING N N 29 0MI N4 H10 SING N N 30 0MI C H11 SING N N 31 0MI C H12 SING N N 32 0MI C H13 SING N N 33 0MI O H14 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0MI InChI InChI 1.03 "InChI=1S/C10H14N5O4/c1-5-4-15(10(18)13-9(5)17)8-2-6(16)7(19-8)3-12-14-11/h4,6-8,11,16H,2-3H2,1H3,(H,13,17,18)/t6-,7+,8+/m0/s1" 0MI InChIKey InChI 1.03 WPGIPVMLNBRRLK-XLPZGREQSA-N 0MI SMILES_CANONICAL CACTVS 3.385 "CC1=CN([C@H]2C[C@H](O)[C@@H](CN=[N]=N)O2)C(=O)NC1=O" 0MI SMILES CACTVS 3.385 "CC1=CN([CH]2C[CH](O)[CH](CN=[N]=N)O2)C(=O)NC1=O" 0MI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CN=[N]=N)O" 0MI SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CN=[N]=N)O" # _pdbx_chem_comp_identifier.comp_id 0MI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(2~{R},4~{S},5~{R})-5-[[(azanylidene-$l^{4}-azanylidene)amino]methyl]-4-oxidanyl-oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0MI "Create component" 2021-06-14 RCSB 0MI "Initial release" 2021-09-08 RCSB ##