data_0T1 # _chem_comp.id 0T1 _chem_comp.name ;[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(propylamino)propyl]amino]butyl] hydrogen phosphate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H38 N7 O16 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "DETHIACOENZYME A" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-05-29 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 749.496 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0T1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4FAC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0T1 N1A N1A N 0 1 Y N N 26.528 13.156 -33.798 -5.389 6.165 1.728 N1A 0T1 1 0T1 C2A C2A C 0 1 Y N N 27.719 13.710 -33.566 -6.097 5.101 2.060 C2A 0T1 2 0T1 N3A N3A N 0 1 Y N N 28.005 14.307 -32.401 -5.744 3.881 1.713 N3A 0T1 3 0T1 C4A C4A C 0 1 Y N N 27.087 14.371 -31.421 -4.641 3.671 1.002 C4A 0T1 4 0T1 C5M C5M C 0 1 Y N N 25.843 13.809 -31.630 -3.853 4.771 0.623 C5M 0T1 5 0T1 C6A C6A C 0 1 Y N N 25.576 13.196 -32.848 -4.271 6.053 1.018 C6A 0T1 6 0T1 N6A N6A N 0 1 N N N 24.284 12.603 -33.087 -3.535 7.174 0.674 N6A 0T1 7 0T1 N7A N7A N 0 1 Y N N 25.131 14.007 -30.506 -2.804 4.286 -0.083 N7A 0T1 8 0T1 C8A C8A C 0 1 Y N N 25.884 14.669 -29.621 -2.896 2.990 -0.161 C8A 0T1 9 0T1 N9A N9A N 0 1 Y N N 27.071 14.893 -30.181 -4.013 2.562 0.493 N9A 0T1 10 0T1 C1B C1B C 0 1 N N R 28.182 15.552 -29.580 -4.460 1.174 0.628 C1B 0T1 11 0T1 C2B C2B C 0 1 N N R 27.957 17.024 -29.504 -5.490 0.823 -0.476 C2B 0T1 12 0T1 O2B O2B O 0 1 N N N 28.307 17.619 -30.705 -6.813 1.184 -0.073 O2B 0T1 13 0T1 C3B C3B C 0 1 N N S 28.876 17.390 -28.496 -5.345 -0.715 -0.578 C3B 0T1 14 0T1 O3B O3B O 0 1 N N N 30.179 17.444 -29.067 -6.364 -1.366 0.184 O3B 0T1 15 0T1 P3B P3B P 0 1 N N N 31.072 18.794 -29.055 -7.418 -2.396 -0.463 P3B 0T1 16 0T1 O7A O7A O 0 1 N N N 32.018 18.708 -27.881 -8.357 -1.615 -1.512 O7A 0T1 17 0T1 O8A O8A O 0 1 N N N 31.862 18.919 -30.356 -6.688 -3.476 -1.162 O8A 0T1 18 0T1 O9A O9A O 0 1 N N N 30.180 20.019 -28.897 -8.330 -3.032 0.702 O9A 0T1 19 0T1 C4B C4B C 0 1 N N R 28.856 16.271 -27.558 -3.955 -1.004 0.023 C4B 0T1 20 0T1 O4B O4B O 0 1 N N N 28.358 15.156 -28.261 -3.370 0.262 0.374 O4B 0T1 21 0T1 C5B C5B C 0 1 N N N 27.953 16.603 -26.447 -3.078 -1.713 -1.011 C5B 0T1 22 0T1 O5B O5B O 0 1 N N N 26.621 16.096 -26.486 -1.835 -2.080 -0.410 O5B 0T1 23 0T1 P1A P1A P 0 1 N N N 25.381 17.041 -26.103 -0.667 -2.847 -1.209 P1A 0T1 24 0T1 O1A O1A O 0 1 N N N 24.421 17.172 -27.272 -0.315 -2.079 -2.425 O1A 0T1 25 0T1 O2A O2A O 0 1 N N N 25.893 18.403 -25.682 -1.179 -4.314 -1.631 O2A 0T1 26 0T1 O3A O3A O 0 1 N N N 24.515 16.439 -24.932 0.631 -2.981 -0.265 O3A 0T1 27 0T1 P2A P2A P 0 1 N N N 25.038 15.554 -23.747 2.194 -3.246 -0.544 P2A 0T1 28 0T1 O4A O4A O 0 1 N N N 25.717 16.434 -22.709 2.418 -4.795 -0.919 O4A 0T1 29 0T1 O5A O5A O 0 1 N N N 23.815 14.905 -23.145 2.645 -2.396 -1.669 O5A 0T1 30 0T1 O6A O6A O 0 1 N N N 26.065 14.462 -24.221 3.043 -2.885 0.775 O6A 0T1 31 0T1 CBP CBP C 0 1 N N N 26.679 12.081 -24.588 4.952 -2.520 2.212 CBP 0T1 32 0T1 CCP CCP C 0 1 N N N 25.669 13.261 -24.751 4.471 -2.914 0.814 CCP 0T1 33 0T1 CDP CDP C 0 1 N N N 26.119 10.824 -25.280 4.462 -1.108 2.540 CDP 0T1 34 0T1 CEP CEP C 0 1 N N N 28.020 12.466 -25.174 4.393 -3.505 3.240 CEP 0T1 35 0T1 CAP CAP C 0 1 N N R 26.856 11.794 -23.102 6.481 -2.551 2.253 CAP 0T1 36 0T1 OAP OAP O 0 1 N N N 25.581 11.628 -22.536 6.934 -3.895 2.076 OAP 0T1 37 0T1 C9P C9P C 0 1 N N N 27.702 10.573 -22.750 7.031 -1.685 1.150 C9P 0T1 38 0T1 O9P O9P O 0 1 N N N 28.943 10.659 -22.659 7.611 -2.193 0.213 O9P 0T1 39 0T1 N8P N8P N 0 1 N N N 27.008 9.363 -22.329 6.879 -0.347 1.203 N8P 0T1 40 0T1 C7P C7P C 0 1 N N N 27.731 8.239 -21.760 7.327 0.486 0.085 C7P 0T1 41 0T1 C6P C6P C 0 1 N N N 27.875 8.226 -20.238 7.040 1.956 0.398 C6P 0T1 42 0T1 C5P C5P C 0 1 N N N 26.554 8.046 -19.510 7.501 2.814 -0.752 C5P 0T1 43 0T1 O5P O5P O 0 1 N N N 25.511 7.974 -20.150 8.009 2.300 -1.726 O5P 0T1 44 0T1 N4P N4P N 0 1 N N N 26.591 7.777 -18.086 7.349 4.152 -0.698 N4P 0T1 45 0T1 C3P C3P C 0 1 N N N 25.369 7.769 -17.250 7.797 4.986 -1.817 C3P 0T1 46 0T1 C2P C2P C 0 1 N N N 24.903 9.099 -16.653 7.510 6.456 -1.504 C2P 0T1 47 0T1 C1P C1P C 0 1 N N N 25.950 9.670 -15.678 7.978 7.326 -2.672 C1P 0T1 48 0T1 H1 H1 H 0 1 N N N 28.473 13.676 -34.338 -6.999 5.236 2.638 H1 0T1 49 0T1 H2 H2 H 0 1 N N N 24.263 12.206 -34.005 -3.834 8.054 0.952 H2 0T1 50 0T1 H3 H3 H 0 1 N N N 24.116 11.886 -32.410 -2.721 7.080 0.156 H3 0T1 51 0T1 H4 H4 H 0 1 N N N 25.583 14.969 -28.628 -2.191 2.348 -0.669 H4 0T1 52 0T1 H5 H5 H 0 1 N N N 29.094 15.359 -30.165 -4.885 1.003 1.617 H5 0T1 53 0T1 H6 H6 H 0 1 N N N 26.919 17.245 -29.214 -5.228 1.302 -1.419 H6 0T1 54 0T1 H7 H7 H 0 1 N N N 28.161 18.556 -30.649 -6.929 2.130 0.092 H7 0T1 55 0T1 H8 H8 H 0 1 N N N 28.601 18.334 -28.003 -5.383 -1.034 -1.620 H8 0T1 56 0T1 H9 H9 H 0 1 N N N 32.915 18.749 -28.192 -8.867 -0.892 -1.122 H9 0T1 57 0T1 H10 H10 H 0 1 N N N 30.304 20.599 -29.639 -8.990 -3.664 0.385 H10 0T1 58 0T1 H11 H11 H 0 1 N N N 29.869 16.076 -27.176 -4.058 -1.626 0.912 H11 0T1 59 0T1 H12 H12 H 0 1 N N N 28.419 16.226 -25.525 -3.588 -2.608 -1.367 H12 0T1 60 0T1 H13 H13 H 0 1 N N N 27.883 17.700 -26.400 -2.892 -1.043 -1.850 H13 0T1 61 0T1 H14 H14 H 0 1 N N N 25.509 19.072 -26.237 -1.427 -4.874 -0.882 H14 0T1 62 0T1 H15 H15 H 0 1 N N N 25.231 16.395 -21.893 2.144 -5.411 -0.226 H15 0T1 63 0T1 H16 H16 H 0 1 N N N 25.493 13.408 -25.827 4.820 -3.920 0.580 H16 0T1 64 0T1 H17 H17 H 0 1 N N N 24.728 12.970 -24.262 4.869 -2.212 0.081 H17 0T1 65 0T1 H18 H18 H 0 1 N N N 25.146 10.564 -24.838 4.765 -0.424 1.747 H18 0T1 66 0T1 H19 H19 H 0 1 N N N 25.992 11.023 -26.354 3.375 -1.110 2.622 H19 0T1 67 0T1 H20 H20 H 0 1 N N N 26.819 9.987 -25.142 4.896 -0.783 3.485 H20 0T1 68 0T1 H21 H21 H 0 1 N N N 28.399 13.364 -24.665 4.667 -3.178 4.243 H21 0T1 69 0T1 H22 H22 H 0 1 N N N 28.732 11.639 -25.036 3.307 -3.543 3.155 H22 0T1 70 0T1 H23 H23 H 0 1 N N N 27.904 12.675 -26.248 4.807 -4.497 3.055 H23 0T1 71 0T1 H24 H24 H 0 1 N N N 27.339 12.673 -22.650 6.826 -2.175 3.217 H24 0T1 72 0T1 H25 H25 H 0 1 N N N 25.667 11.448 -21.607 6.663 -4.294 1.238 H25 0T1 73 0T1 H26 H26 H 0 1 N N N 26.015 9.305 -22.434 6.473 0.064 1.982 H26 0T1 74 0T1 H27 H27 H 0 1 N N N 27.205 7.319 -22.055 8.398 0.349 -0.064 H27 0T1 75 0T1 H28 H28 H 0 1 N N N 28.743 8.238 -22.192 6.794 0.197 -0.820 H28 0T1 76 0T1 H29 H29 H 0 1 N N N 28.543 7.399 -19.958 5.969 2.094 0.547 H29 0T1 77 0T1 H30 H30 H 0 1 N N N 28.321 9.181 -19.921 7.573 2.246 1.304 H30 0T1 78 0T1 H31 H31 H 0 1 N N N 27.473 7.590 -17.653 6.943 4.563 0.080 H31 0T1 79 0T1 H32 H32 H 0 1 N N N 24.548 7.384 -17.873 8.868 4.848 -1.966 H32 0T1 80 0T1 H33 H33 H 0 1 N N N 25.549 7.079 -16.413 7.264 4.696 -2.722 H33 0T1 81 0T1 H34 H34 H 0 1 N N N 24.740 9.820 -17.467 6.439 6.593 -1.355 H34 0T1 82 0T1 H35 H35 H 0 1 N N N 23.959 8.938 -16.112 8.043 6.745 -0.598 H35 0T1 83 0T1 H36 H36 H 0 1 N N N 25.587 10.623 -15.267 9.049 7.189 -2.821 H36 0T1 84 0T1 H37 H37 H 0 1 N N N 26.115 8.956 -14.858 7.445 7.037 -3.577 H37 0T1 85 0T1 H38 H38 H 0 1 N N N 26.896 9.838 -16.213 7.774 8.374 -2.449 H38 0T1 86 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0T1 N1A C2A DOUB Y N 1 0T1 N1A C6A SING Y N 2 0T1 C2A N3A SING Y N 3 0T1 N6A C6A SING N N 4 0T1 C6A C5M DOUB Y N 5 0T1 N3A C4A DOUB Y N 6 0T1 C5M C4A SING Y N 7 0T1 C5M N7A SING Y N 8 0T1 C4A N9A SING Y N 9 0T1 O2B C2B SING N N 10 0T1 N7A C8A DOUB Y N 11 0T1 O8A P3B DOUB N N 12 0T1 N9A C8A SING Y N 13 0T1 N9A C1B SING N N 14 0T1 C1B C2B SING N N 15 0T1 C1B O4B SING N N 16 0T1 C2B C3B SING N N 17 0T1 O3B P3B SING N N 18 0T1 O3B C3B SING N N 19 0T1 P3B O9A SING N N 20 0T1 P3B O7A SING N N 21 0T1 C3B C4B SING N N 22 0T1 O4B C4B SING N N 23 0T1 C4B C5B SING N N 24 0T1 O1A P1A DOUB N N 25 0T1 O5B C5B SING N N 26 0T1 O5B P1A SING N N 27 0T1 P1A O2A SING N N 28 0T1 P1A O3A SING N N 29 0T1 CDP CBP SING N N 30 0T1 CEP CBP SING N N 31 0T1 O3A P2A SING N N 32 0T1 CCP CBP SING N N 33 0T1 CCP O6A SING N N 34 0T1 CBP CAP SING N N 35 0T1 O6A P2A SING N N 36 0T1 P2A O5A DOUB N N 37 0T1 P2A O4A SING N N 38 0T1 CAP C9P SING N N 39 0T1 CAP OAP SING N N 40 0T1 C9P O9P DOUB N N 41 0T1 C9P N8P SING N N 42 0T1 N8P C7P SING N N 43 0T1 C7P C6P SING N N 44 0T1 C6P C5P SING N N 45 0T1 O5P C5P DOUB N N 46 0T1 C5P N4P SING N N 47 0T1 N4P C3P SING N N 48 0T1 C3P C2P SING N N 49 0T1 C2P C1P SING N N 50 0T1 C2A H1 SING N N 51 0T1 N6A H2 SING N N 52 0T1 N6A H3 SING N N 53 0T1 C8A H4 SING N N 54 0T1 C1B H5 SING N N 55 0T1 C2B H6 SING N N 56 0T1 O2B H7 SING N N 57 0T1 C3B H8 SING N N 58 0T1 O7A H9 SING N N 59 0T1 O9A H10 SING N N 60 0T1 C4B H11 SING N N 61 0T1 C5B H12 SING N N 62 0T1 C5B H13 SING N N 63 0T1 O2A H14 SING N N 64 0T1 O4A H15 SING N N 65 0T1 CCP H16 SING N N 66 0T1 CCP H17 SING N N 67 0T1 CDP H18 SING N N 68 0T1 CDP H19 SING N N 69 0T1 CDP H20 SING N N 70 0T1 CEP H21 SING N N 71 0T1 CEP H22 SING N N 72 0T1 CEP H23 SING N N 73 0T1 CAP H24 SING N N 74 0T1 OAP H25 SING N N 75 0T1 N8P H26 SING N N 76 0T1 C7P H27 SING N N 77 0T1 C7P H28 SING N N 78 0T1 C6P H29 SING N N 79 0T1 C6P H30 SING N N 80 0T1 N4P H31 SING N N 81 0T1 C3P H32 SING N N 82 0T1 C3P H33 SING N N 83 0T1 C2P H34 SING N N 84 0T1 C2P H35 SING N N 85 0T1 C1P H36 SING N N 86 0T1 C1P H37 SING N N 87 0T1 C1P H38 SING N N 88 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0T1 SMILES ACDLabs 12.01 "O=C(NCCC)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O" 0T1 InChI InChI 1.03 "InChI=1S/C22H38N7O16P3/c1-4-6-24-13(30)5-7-25-20(33)17(32)22(2,3)9-42-48(39,40)45-47(37,38)41-8-12-16(44-46(34,35)36)15(31)21(43-12)29-11-28-14-18(23)26-10-27-19(14)29/h10-12,15-17,21,31-32H,4-9H2,1-3H3,(H,24,30)(H,25,33)(H,37,38)(H,39,40)(H2,23,26,27)(H2,34,35,36)/t12-,15-,16-,17+,21-/m1/s1" 0T1 InChIKey InChI 1.03 JJSFSVFKDOGQNC-GORZOVPNSA-N 0T1 SMILES_CANONICAL CACTVS 3.370 "CCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 0T1 SMILES CACTVS 3.370 "CCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23" 0T1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" 0T1 SMILES "OpenEye OEToolkits" 1.7.6 "CCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0T1 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (3R)-3-hydroxy-2,2-dimethyl-4-oxo-4-{[3-oxo-3-(propylamino)propyl]amino}butyl dihydrogen diphosphate (non-preferred name)" 0T1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(propylamino)propyl]amino]butyl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0T1 "Create component" 2012-05-29 RCSB 0T1 "Initial release" 2013-05-22 RCSB 0T1 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 0T1 _pdbx_chem_comp_synonyms.name "DETHIACOENZYME A" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##