data_0XO # _chem_comp.id 0XO _chem_comp.name 2-methyl-D-lysine _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H16 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-08-29 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 160.214 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0XO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GM9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0XO CA CAD C 0 1 N N R Y N N -20.704 -12.444 -6.705 -1.255 0.371 0.087 CAD 0XO 1 0XO C CAE C 0 1 N N N Y N Y -20.786 -11.248 -7.626 -2.487 -0.486 -0.044 CAE 0XO 2 0XO CAZ CAZ C 0 1 N N N N N N -21.221 -12.053 -5.316 -0.007 -0.501 -0.067 CAZ 0XO 3 0XO N NAC N 0 1 N N N Y Y N -21.564 -13.525 -7.174 -1.263 1.403 -0.959 NAC 0XO 4 0XO O OAG O 0 1 N N N Y N Y -20.876 -10.119 -7.165 -2.431 -1.666 0.210 OAG 0XO 5 0XO CBA CBA C 0 1 N N N N N N -19.237 -12.869 -6.680 -1.243 1.040 1.463 CBA 0XO 6 0XO C02 C02 C 0 1 N N N N N N -22.638 -10.799 -3.349 3.742 0.368 0.045 C02 0XO 7 0XO N02 N02 N 0 1 N N N N N N -23.439 -10.027 -4.300 4.940 -0.470 -0.103 N02 0XO 8 0XO C3 C3 C 0 1 N N N N N N -21.132 -10.489 -3.342 2.491 -0.503 -0.088 C3 0XO 9 0XO C4 C4 C 0 1 N N N N N N -20.343 -11.101 -4.511 1.244 0.370 0.066 C4 0XO 10 0XO H7 H7 H 0 1 N N N N N N -22.203 -11.574 -5.446 -0.001 -1.266 0.709 H7 0XO 11 0XO H8 H8 H 0 1 N N N N N N -21.339 -12.977 -4.730 -0.016 -0.978 -1.047 H8 0XO 12 0XO H H9 H 0 1 N N N Y Y N -21.493 -14.303 -6.550 -0.480 2.031 -0.854 H9 0XO 13 0XO H14 H14 H 0 1 N N N N N N -19.119 -13.741 -6.021 -0.351 1.661 1.557 H14 0XO 14 0XO H15 H15 H 0 1 N N N N N N -18.914 -13.133 -7.698 -2.131 1.662 1.572 H15 0XO 15 0XO H16 H16 H 0 1 N N N N N N -18.621 -12.039 -6.304 -1.237 0.275 2.239 H16 0XO 16 0XO H41 H41 H 0 1 N N N N N N -23.029 -10.602 -2.340 3.751 0.845 1.025 H41 0XO 17 0XO H42 H42 H 0 1 N N N N N N -22.763 -11.865 -3.589 3.736 1.133 -0.732 H42 0XO 18 0XO H43 H43 H 0 1 N N N N N N -24.398 -10.300 -4.228 4.923 -0.973 -0.978 H43 0XO 19 0XO H44 H44 H 0 1 N N N N N N -20.707 -10.875 -2.403 2.482 -0.979 -1.068 H44 0XO 20 0XO H45 H45 H 0 1 N N N N N N -21.007 -9.397 -3.379 2.497 -1.268 0.688 H45 0XO 21 0XO H46 H46 H 0 1 N N N N N N -19.480 -11.655 -4.113 1.238 1.135 -0.710 H46 0XO 22 0XO H47 H47 H 0 1 N N N N N N -19.988 -10.294 -5.169 1.252 0.846 1.046 H47 0XO 23 0XO OXT OXT O 0 1 N Y N Y N Y ? ? ? -3.646 0.061 -0.442 OXT 0XO 24 0XO HXT HXT H 0 1 N Y N Y N Y ? ? ? -4.409 -0.529 -0.511 HXT 0XO 25 0XO H2 H2 H 0 1 N Y N Y Y N -22.512 -13.208 -7.204 -1.271 0.986 -1.878 H2 0XO 26 0XO H1 H1 H 0 1 N Y N N N N -23.354 -9.052 -4.093 5.780 0.083 -0.019 H1 0XO 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0XO C O DOUB N N 1 0XO C CA SING N N 2 0XO N CA SING N N 3 0XO CA CBA SING N N 4 0XO CA CAZ SING N N 5 0XO CAZ C4 SING N N 6 0XO C4 C3 SING N N 7 0XO N02 C02 SING N N 8 0XO C02 C3 SING N N 9 0XO CAZ H7 SING N N 10 0XO CAZ H8 SING N N 11 0XO N H SING N N 12 0XO CBA H14 SING N N 13 0XO CBA H15 SING N N 14 0XO CBA H16 SING N N 15 0XO C02 H41 SING N N 16 0XO C02 H42 SING N N 17 0XO N02 H43 SING N N 18 0XO C3 H44 SING N N 19 0XO C3 H45 SING N N 20 0XO C4 H46 SING N N 21 0XO C4 H47 SING N N 22 0XO C OXT SING N N 23 0XO OXT HXT SING N N 24 0XO N H2 SING N N 25 0XO N02 H1 SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0XO SMILES ACDLabs 12.01 "O=C(O)C(N)(CCCCN)C" 0XO InChI InChI 1.03 "InChI=1S/C7H16N2O2/c1-7(9,6(10)11)4-2-3-5-8/h2-5,8-9H2,1H3,(H,10,11)/t7-/m1/s1" 0XO InChIKey InChI 1.03 CPUSCHYXEUZMSV-SSDOTTSWSA-N 0XO SMILES_CANONICAL CACTVS 3.370 "C[C@@](N)(CCCCN)C(O)=O" 0XO SMILES CACTVS 3.370 "C[C](N)(CCCCN)C(O)=O" 0XO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@](CCCCN)(C(=O)O)N" 0XO SMILES "OpenEye OEToolkits" 1.7.6 "CC(CCCCN)(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0XO "SYSTEMATIC NAME" ACDLabs 12.01 2-methyl-D-lysine 0XO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2,6-bis(azanyl)-2-methyl-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0XO "Create component" 2012-08-29 RCSB 0XO "Initial release" 2014-02-19 RCSB 0XO "Modify backbone" 2023-11-03 PDBE #