data_0Y5 # _chem_comp.id 0Y5 _chem_comp.name "4-{[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]methyl}-2-[3-(trifluoromethyl)phenoxy]benzoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 F3 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-09-10 _chem_comp.pdbx_modified_date 2012-10-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.470 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 0Y5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4GSY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 0Y5 C26 C26 C 0 1 Y N N 10.436 -1.849 26.976 -3.774 1.695 -2.477 C26 0Y5 1 0Y5 C19 C19 C 0 1 Y N N 8.593 1.312 31.547 -1.951 -4.060 -0.009 C19 0Y5 2 0Y5 C27 C27 C 0 1 Y N N 11.458 -1.733 26.056 -3.820 2.760 -1.596 C27 0Y5 3 0Y5 C18 C18 C 0 1 Y N N 7.545 1.970 30.952 -0.762 -3.523 -0.452 C18 0Y5 4 0Y5 C25 C25 C 0 1 Y N N 10.262 -0.836 27.907 -3.870 0.401 -2.004 C25 0Y5 5 0Y5 C22 C22 C 0 1 Y N N 8.788 2.143 28.904 -1.800 -1.374 -0.706 C22 0Y5 6 0Y5 C29 C29 C 0 1 Y N N 12.116 0.376 26.980 -4.059 1.240 0.239 C29 0Y5 7 0Y5 C20 C20 C 0 1 Y N N 9.744 1.076 30.828 -3.088 -3.253 0.086 C20 0Y5 8 0Y5 C17 C17 C 0 1 Y N N 7.627 2.363 29.626 -0.686 -2.185 -0.800 C17 0Y5 9 0Y5 C28 C28 C 0 1 Y N N 12.299 -0.631 26.046 -3.963 2.532 -0.240 C28 0Y5 10 0Y5 C24 C24 C 0 1 Y N N 11.099 0.268 27.895 -4.007 0.169 -0.643 C24 0Y5 11 0Y5 C21 C21 C 0 1 Y N N 9.845 1.495 29.507 -3.006 -1.898 -0.267 C21 0Y5 12 0Y5 C3 C3 C 0 1 N N N 6.044 -1.157 25.422 5.988 -0.705 0.836 C3 0Y5 13 0Y5 C2 C2 C 0 1 N N N 6.521 -1.892 24.406 7.243 -0.363 0.474 C2 0Y5 14 0Y5 C8 C8 C 0 1 N N N 6.417 -1.284 23.052 7.432 0.720 -0.418 C8 0Y5 15 0Y5 C5 C5 C 0 1 N N N 5.429 0.753 24.069 5.117 1.025 -0.509 C5 0Y5 16 0Y5 C34 C34 C 0 1 N N N 10.830 0.444 31.579 -4.365 -3.822 0.553 C34 0Y5 17 0Y5 C12 C12 C 0 1 N N N 3.558 0.692 28.570 1.448 0.435 1.776 C12 0Y5 18 0Y5 C11 C11 C 0 1 N N N 4.037 -0.050 27.324 2.890 0.811 1.422 C11 0Y5 19 0Y5 C13 C13 C 0 1 N N N 4.724 1.361 29.275 0.704 0.033 0.500 C13 0Y5 20 0Y5 C15 C15 C 0 1 N N N 6.052 1.477 27.255 2.757 -0.755 -0.518 C15 0Y5 21 0Y5 C10 C10 C 0 1 N N S 4.960 0.810 26.449 3.562 -0.376 0.727 C10 0Y5 22 0Y5 C1 C1 C 0 1 N N N 7.103 -3.262 24.552 8.427 -1.125 1.012 C1 0Y5 23 0Y5 C16 C16 C 0 1 N N N 6.464 3.061 28.995 0.622 -1.608 -1.277 C16 0Y5 24 0Y5 C30 C30 C 0 1 N N N 13.378 -0.488 25.029 -4.013 3.695 0.717 C30 0Y5 25 0Y5 N7 N7 N 0 1 N N N 5.860 -0.009 23.008 6.358 1.387 -0.886 N7 0Y5 26 0Y5 N4 N4 N 0 1 N N N 5.503 0.118 25.303 4.924 -0.006 0.334 N4 0Y5 27 0Y5 N14 N14 N 0 1 N N N 5.432 2.255 28.339 1.385 -1.106 -0.127 N14 0Y5 28 0Y5 O9 O9 O 0 1 N N N 6.810 -1.880 22.062 8.555 1.047 -0.759 O9 0Y5 29 0Y5 O6 O6 O 0 1 N N N 5.037 1.913 23.920 4.158 1.632 -0.943 O6 0Y5 30 0Y5 O35 O35 O 0 1 N N N 11.256 0.912 32.625 -4.438 -5.124 0.891 O35 0Y5 31 0Y5 O36 O36 O 0 1 N N N 11.271 -0.693 30.991 -5.351 -3.116 0.634 O36 0Y5 32 0Y5 O23 O23 O 0 1 N N N 11.009 1.336 28.776 -4.101 -1.103 -0.175 O23 0Y5 33 0Y5 F31 F31 F 0 1 N N N 12.985 -0.836 23.773 -5.230 3.679 1.407 F31 0Y5 34 0Y5 F32 F32 F 0 1 N N N 13.817 0.783 24.862 -2.958 3.593 1.631 F32 0Y5 35 0Y5 F33 F33 F 0 1 N N N 14.468 -1.226 25.320 -3.897 4.892 0.003 F33 0Y5 36 0Y5 H1 H1 H 0 1 N N N 9.785 -2.711 26.971 -3.667 1.876 -3.537 H1 0Y5 37 0Y5 H2 H2 H 0 1 N N N 8.515 0.982 32.572 -2.006 -5.105 0.261 H2 0Y5 38 0Y5 H3 H3 H 0 1 N N N 11.606 -2.517 25.328 -3.745 3.771 -1.968 H3 0Y5 39 0Y5 H4 H4 H 0 1 N N N 6.652 2.182 31.521 0.115 -4.149 -0.528 H4 0Y5 40 0Y5 H5 H5 H 0 1 N N N 9.474 -0.908 28.642 -3.838 -0.430 -2.693 H5 0Y5 41 0Y5 H6 H6 H 0 1 N N N 8.865 2.476 27.879 -1.732 -0.331 -0.979 H6 0Y5 42 0Y5 H7 H7 H 0 1 N N N 12.767 1.237 26.988 -4.165 1.062 1.299 H7 0Y5 43 0Y5 H8 H8 H 0 1 N N N 6.083 -1.590 26.411 5.824 -1.528 1.516 H8 0Y5 44 0Y5 H9 H9 H 0 1 N N N 2.826 1.458 28.275 1.451 -0.401 2.475 H9 0Y5 45 0Y5 H10 H10 H 0 1 N N N 3.083 -0.024 29.257 0.950 1.291 2.233 H10 0Y5 46 0Y5 H11 H11 H 0 1 N N N 3.160 -0.344 26.729 2.889 1.672 0.754 H11 0Y5 47 0Y5 H12 H12 H 0 1 N N N 4.586 -0.950 27.638 3.436 1.058 2.333 H12 0Y5 48 0Y5 H13 H13 H 0 1 N N N 5.420 0.591 29.640 -0.319 -0.249 0.750 H13 0Y5 49 0Y5 H14 H14 H 0 1 N N N 4.347 1.948 30.126 0.690 0.874 -0.193 H14 0Y5 50 0Y5 H15 H15 H 0 1 N N N 6.716 0.712 27.682 2.733 0.090 -1.206 H15 0Y5 51 0Y5 H16 H16 H 0 1 N N N 6.635 2.147 26.605 3.225 -1.609 -1.007 H16 0Y5 52 0Y5 H17 H17 H 0 1 N N N 4.330 1.624 26.060 3.598 -1.225 1.410 H17 0Y5 53 0Y5 H18 H18 H 0 1 N N N 7.102 -3.550 25.614 8.658 -1.955 0.346 H18 0Y5 54 0Y5 H19 H19 H 0 1 N N N 6.500 -3.980 23.977 9.288 -0.459 1.077 H19 0Y5 55 0Y5 H20 H20 H 0 1 N N N 8.136 -3.264 24.173 8.191 -1.510 2.004 H20 0Y5 56 0Y5 H21 H21 H 0 1 N N N 6.870 3.746 28.237 1.197 -2.383 -1.785 H21 0Y5 57 0Y5 H22 H22 H 0 1 N N N 5.967 3.642 29.786 0.427 -0.789 -1.969 H22 0Y5 58 0Y5 H23 H23 H 0 1 N N N 5.762 0.400 22.101 6.479 2.130 -1.498 H23 0Y5 59 0Y5 H25 H25 H 0 1 N N N 11.946 0.354 32.964 -5.297 -5.452 1.192 H25 0Y5 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0Y5 O9 C8 DOUB N N 1 0Y5 N7 C8 SING N N 2 0Y5 N7 C5 SING N N 3 0Y5 C8 C2 SING N N 4 0Y5 F31 C30 SING N N 5 0Y5 O6 C5 DOUB N N 6 0Y5 C5 N4 SING N N 7 0Y5 C2 C1 SING N N 8 0Y5 C2 C3 DOUB N N 9 0Y5 F32 C30 SING N N 10 0Y5 C30 F33 SING N N 11 0Y5 C30 C28 SING N N 12 0Y5 N4 C3 SING N N 13 0Y5 N4 C10 SING N N 14 0Y5 C28 C27 DOUB Y N 15 0Y5 C28 C29 SING Y N 16 0Y5 C27 C26 SING Y N 17 0Y5 C10 C15 SING N N 18 0Y5 C10 C11 SING N N 19 0Y5 C26 C25 DOUB Y N 20 0Y5 C29 C24 DOUB Y N 21 0Y5 C15 N14 SING N N 22 0Y5 C11 C12 SING N N 23 0Y5 C24 C25 SING Y N 24 0Y5 C24 O23 SING N N 25 0Y5 N14 C16 SING N N 26 0Y5 N14 C13 SING N N 27 0Y5 C12 C13 SING N N 28 0Y5 O23 C21 SING N N 29 0Y5 C22 C21 DOUB Y N 30 0Y5 C22 C17 SING Y N 31 0Y5 C16 C17 SING N N 32 0Y5 C21 C20 SING Y N 33 0Y5 C17 C18 DOUB Y N 34 0Y5 C20 C19 DOUB Y N 35 0Y5 C20 C34 SING N N 36 0Y5 C18 C19 SING Y N 37 0Y5 O36 C34 DOUB N N 38 0Y5 C34 O35 SING N N 39 0Y5 C26 H1 SING N N 40 0Y5 C19 H2 SING N N 41 0Y5 C27 H3 SING N N 42 0Y5 C18 H4 SING N N 43 0Y5 C25 H5 SING N N 44 0Y5 C22 H6 SING N N 45 0Y5 C29 H7 SING N N 46 0Y5 C3 H8 SING N N 47 0Y5 C12 H9 SING N N 48 0Y5 C12 H10 SING N N 49 0Y5 C11 H11 SING N N 50 0Y5 C11 H12 SING N N 51 0Y5 C13 H13 SING N N 52 0Y5 C13 H14 SING N N 53 0Y5 C15 H15 SING N N 54 0Y5 C15 H16 SING N N 55 0Y5 C10 H17 SING N N 56 0Y5 C1 H18 SING N N 57 0Y5 C1 H19 SING N N 58 0Y5 C1 H20 SING N N 59 0Y5 C16 H21 SING N N 60 0Y5 C16 H22 SING N N 61 0Y5 N7 H23 SING N N 62 0Y5 O35 H25 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 0Y5 SMILES ACDLabs 12.01 "FC(F)(F)c4cc(Oc1cc(ccc1C(=O)O)CN3CCCC(N2C=C(C(=O)NC2=O)C)C3)ccc4" 0Y5 InChI InChI 1.03 "InChI=1S/C25H24F3N3O5/c1-15-12-31(24(35)29-22(15)32)18-5-3-9-30(14-18)13-16-7-8-20(23(33)34)21(10-16)36-19-6-2-4-17(11-19)25(26,27)28/h2,4,6-8,10-12,18H,3,5,9,13-14H2,1H3,(H,33,34)(H,29,32,35)/t18-/m0/s1" 0Y5 InChIKey InChI 1.03 SLYIQORXPGMWOF-SFHVURJKSA-N 0Y5 SMILES_CANONICAL CACTVS 3.370 "CC1=CN([C@H]2CCCN(C2)Cc3ccc(C(O)=O)c(Oc4cccc(c4)C(F)(F)F)c3)C(=O)NC1=O" 0Y5 SMILES CACTVS 3.370 "CC1=CN([CH]2CCCN(C2)Cc3ccc(C(O)=O)c(Oc4cccc(c4)C(F)(F)F)c3)C(=O)NC1=O" 0Y5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)[C@H]2CCCN(C2)Cc3ccc(c(c3)Oc4cccc(c4)C(F)(F)F)C(=O)O" 0Y5 SMILES "OpenEye OEToolkits" 1.7.6 "CC1=CN(C(=O)NC1=O)C2CCCN(C2)Cc3ccc(c(c3)Oc4cccc(c4)C(F)(F)F)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 0Y5 "SYSTEMATIC NAME" ACDLabs 12.01 "4-{[(3S)-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)piperidin-1-yl]methyl}-2-[3-(trifluoromethyl)phenoxy]benzoic acid" 0Y5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-[[(3S)-3-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]piperidin-1-yl]methyl]-2-[3-(trifluoromethyl)phenoxy]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 0Y5 "Create component" 2012-09-10 RCSB 0Y5 "Initial release" 2012-10-19 RCSB #