data_18Z # _chem_comp.id 18Z _chem_comp.name "2-{[(2-aminopyrimidin-5-yl)methyl]amino}-5-nitro-4-{[2-(piperazin-1-yl)ethyl]amino}benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H25 N9 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-21 _chem_comp.pdbx_modified_date 2012-08-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 415.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 18Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RM6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 18Z N01 N01 N 0 1 N N N 94.443 45.945 -88.531 -3.054 4.507 -0.070 N01 18Z 1 18Z N02 N02 N 0 1 N N N 95.058 44.507 -82.391 2.494 1.296 0.069 N02 18Z 2 18Z N03 N03 N 0 1 N N N 91.822 46.360 -85.384 -2.232 0.400 -0.034 N03 18Z 3 18Z N04 N04 N 0 1 Y N N 90.265 47.355 -81.016 -4.924 -2.930 -1.089 N04 18Z 4 18Z N05 N05 N 0 1 Y N N 90.365 49.244 -82.529 -5.141 -2.676 1.200 N05 18Z 5 18Z N06 N06 N 0 1 N N N 90.179 49.484 -80.296 -6.790 -3.820 0.002 N06 18Z 6 18Z N07 N07 N 0 1 N N N 94.867 41.408 -80.485 4.547 -1.805 0.403 N07 18Z 7 18Z N08 N08 N 0 1 N N N 95.229 38.689 -79.618 5.392 -4.380 -0.469 N08 18Z 8 18Z N09 N09 N 1 1 N N N 96.925 44.518 -84.418 2.054 4.083 -0.033 N09 18Z 9 18Z C10 C10 C 0 1 Y N N 95.349 45.446 -85.909 -0.357 3.586 -0.084 C10 18Z 10 18Z C11 C11 C 0 1 Y N N 94.024 45.932 -86.183 -1.428 2.685 -0.085 C11 18Z 11 18Z C12 C12 C 0 1 Y N N 93.036 45.918 -85.137 -1.176 1.303 -0.034 C12 18Z 12 18Z C13 C13 C 0 1 Y N N 93.419 45.418 -83.833 0.131 0.846 0.017 C13 18Z 13 18Z C14 C14 C 0 1 Y N N 94.741 44.940 -83.569 1.182 1.754 0.018 C14 18Z 14 18Z C15 C15 C 0 1 Y N N 95.720 44.948 -84.619 0.926 3.124 -0.034 C15 18Z 15 18Z C16 C16 C 0 1 N N N 93.736 46.403 -87.452 -2.811 3.183 -0.139 C16 18Z 16 18Z C17 C17 C 0 1 N N N 90.598 46.025 -84.588 -1.973 -1.030 0.149 C17 18Z 17 18Z C18 C18 C 0 1 Y N N 90.471 46.973 -83.421 -3.276 -1.786 0.109 C18 18Z 18 18Z C19 C19 C 0 1 Y N N 90.368 46.522 -82.100 -3.777 -2.271 -1.089 C19 18Z 19 18Z C20 C20 C 0 1 Y N N 90.271 48.691 -81.285 -5.592 -3.127 0.038 C20 18Z 20 18Z C21 C21 C 0 1 Y N N 90.465 48.362 -83.572 -4.001 -2.009 1.270 C21 18Z 21 18Z C22 C22 C 0 1 N N N 94.284 43.447 -81.699 2.764 -0.136 0.222 C22 18Z 22 18Z C23 C23 C 0 1 N N N 95.159 42.817 -80.606 4.276 -0.369 0.249 C23 18Z 23 18Z C24 C24 C 0 1 N N N 94.017 40.814 -79.447 5.972 -2.097 0.197 C24 18Z 24 18Z C25 C25 C 0 1 N N N 94.776 39.707 -78.683 6.226 -3.586 0.443 C25 18Z 25 18Z C26 C26 C 0 1 N N N 96.126 39.293 -80.589 3.966 -4.088 -0.263 C26 18Z 26 18Z C27 C27 C 0 1 N N N 95.362 40.361 -81.385 3.712 -2.599 -0.510 C27 18Z 27 18Z O28 O28 O 0 1 N N N 92.859 47.240 -87.631 -3.736 2.400 -0.245 O28 18Z 28 18Z O29 O29 O -1 1 N N N 97.927 44.953 -85.152 1.961 5.131 0.580 O29 18Z 29 18Z O30 O30 O 0 1 N N N 97.179 43.616 -83.492 3.075 3.823 -0.645 O30 18Z 30 18Z HN01 HN01 H 0 0 N N N 94.240 46.293 -89.446 -2.317 5.132 0.015 HN01 18Z 31 18Z HN0A HN0A H 0 0 N N N 95.162 45.262 -88.404 -3.966 4.835 -0.110 HN0A 18Z 32 18Z HN02 HN02 H 0 0 N N N 95.984 44.142 -82.483 3.230 1.924 0.003 HN02 18Z 33 18Z HN03 HN03 H 0 0 N N N 91.900 47.355 -85.316 -3.141 0.717 -0.155 HN03 18Z 34 18Z HN06 HN06 H 0 0 N N N 90.115 48.956 -79.449 -7.130 -4.156 -0.842 HN06 18Z 35 18Z HN0B HN0B H 0 0 N N N 90.988 50.070 -80.263 -7.288 -3.971 0.820 HN0B 18Z 36 18Z HN08 HN08 H 0 0 N N N 95.712 37.969 -79.120 5.658 -4.224 -1.430 HN08 18Z 37 18Z H10 H10 H 0 1 N N N 96.086 45.457 -86.699 -0.546 4.648 -0.127 H10 18Z 38 18Z H13 H13 H 0 1 N N N 92.687 45.406 -83.039 0.333 -0.214 0.057 H13 18Z 39 18Z H17 H17 H 0 1 N N N 89.709 46.116 -85.230 -1.322 -1.386 -0.649 H17 18Z 40 18Z H17A H17A H 0 0 N N N 90.678 44.994 -84.213 -1.489 -1.191 1.112 H17A 18Z 41 18Z H19 H19 H 0 1 N N N 90.370 45.456 -81.925 -3.237 -2.114 -2.010 H19 18Z 42 18Z H21 H21 H 0 1 N N N 90.544 48.764 -84.571 -3.639 -1.644 2.219 H21 18Z 43 18Z H22 H22 H 0 1 N N N 93.384 43.886 -81.243 2.325 -0.491 1.154 H22 18Z 44 18Z H22A H22A H 0 0 N N N 93.987 42.675 -82.424 2.328 -0.680 -0.616 H22A 18Z 45 18Z H23 H23 H 0 1 N N N 94.953 43.313 -79.646 4.712 0.175 1.087 H23 18Z 46 18Z H23A H23A H 0 0 N N N 96.219 42.946 -80.871 4.715 -0.014 -0.683 H23A 18Z 47 18Z H24 H24 H 0 1 N N N 93.717 41.599 -78.737 6.251 -1.845 -0.826 H24 18Z 48 18Z H24A H24A H 0 0 N N N 93.126 40.376 -79.920 6.569 -1.506 0.892 H24A 18Z 49 18Z H25 H25 H 0 1 N N N 94.105 39.249 -77.941 5.973 -3.832 1.474 H25 18Z 50 18Z H25A H25A H 0 0 N N N 95.645 40.146 -78.172 7.278 -3.810 0.263 H25A 18Z 51 18Z H26 H26 H 0 1 N N N 96.974 39.759 -80.067 3.370 -4.679 -0.959 H26 18Z 52 18Z H26A H26A H 0 0 N N N 96.501 38.520 -81.276 3.688 -4.340 0.760 H26A 18Z 53 18Z H27 H27 H 0 1 N N N 94.509 39.890 -81.896 2.661 -2.375 -0.329 H27 18Z 54 18Z H27A H27A H 0 0 N N N 96.037 40.811 -82.127 3.965 -2.353 -1.541 H27A 18Z 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 18Z N01 C16 SING N N 1 18Z N01 HN01 SING N N 2 18Z N01 HN0A SING N N 3 18Z N02 C14 SING N N 4 18Z N02 C22 SING N N 5 18Z N02 HN02 SING N N 6 18Z N03 C12 SING N N 7 18Z N03 C17 SING N N 8 18Z N03 HN03 SING N N 9 18Z N04 C19 DOUB Y N 10 18Z N04 C20 SING Y N 11 18Z N05 C20 DOUB Y N 12 18Z N05 C21 SING Y N 13 18Z N06 C20 SING N N 14 18Z N06 HN06 SING N N 15 18Z N06 HN0B SING N N 16 18Z N07 C23 SING N N 17 18Z N07 C24 SING N N 18 18Z N07 C27 SING N N 19 18Z N08 C25 SING N N 20 18Z N08 C26 SING N N 21 18Z N08 HN08 SING N N 22 18Z N09 C15 SING N N 23 18Z N09 O29 SING N N 24 18Z N09 O30 DOUB N N 25 18Z C10 C11 DOUB Y N 26 18Z C10 C15 SING Y N 27 18Z C10 H10 SING N N 28 18Z C11 C12 SING Y N 29 18Z C11 C16 SING N N 30 18Z C12 C13 DOUB Y N 31 18Z C13 C14 SING Y N 32 18Z C13 H13 SING N N 33 18Z C14 C15 DOUB Y N 34 18Z C16 O28 DOUB N N 35 18Z C17 C18 SING N N 36 18Z C17 H17 SING N N 37 18Z C17 H17A SING N N 38 18Z C18 C19 SING Y N 39 18Z C18 C21 DOUB Y N 40 18Z C19 H19 SING N N 41 18Z C21 H21 SING N N 42 18Z C22 C23 SING N N 43 18Z C22 H22 SING N N 44 18Z C22 H22A SING N N 45 18Z C23 H23 SING N N 46 18Z C23 H23A SING N N 47 18Z C24 C25 SING N N 48 18Z C24 H24 SING N N 49 18Z C24 H24A SING N N 50 18Z C25 H25 SING N N 51 18Z C25 H25A SING N N 52 18Z C26 C27 SING N N 53 18Z C26 H26 SING N N 54 18Z C26 H26A SING N N 55 18Z C27 H27 SING N N 56 18Z C27 H27A SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 18Z SMILES ACDLabs 12.01 "[O-][N+](=O)c3cc(C(=O)N)c(NCc1cnc(nc1)N)cc3NCCN2CCNCC2" 18Z SMILES_CANONICAL CACTVS 3.370 "NC(=O)c1cc(c(NCCN2CCNCC2)cc1NCc3cnc(N)nc3)[N+]([O-])=O" 18Z SMILES CACTVS 3.370 "NC(=O)c1cc(c(NCCN2CCNCC2)cc1NCc3cnc(N)nc3)[N+]([O-])=O" 18Z SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1c(c(cc(c1[N+](=O)[O-])NCCN2CCNCC2)NCc3cnc(nc3)N)C(=O)N" 18Z SMILES "OpenEye OEToolkits" 1.7.2 "c1c(c(cc(c1[N+](=O)[O-])NCCN2CCNCC2)NCc3cnc(nc3)N)C(=O)N" 18Z InChI InChI 1.03 "InChI=1S/C18H25N9O3/c19-17(28)13-7-16(27(29)30)15(22-3-6-26-4-1-21-2-5-26)8-14(13)23-9-12-10-24-18(20)25-11-12/h7-8,10-11,21-23H,1-6,9H2,(H2,19,28)(H2,20,24,25)" 18Z InChIKey InChI 1.03 IDZSPROLKKFEMF-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 18Z "SYSTEMATIC NAME" ACDLabs 12.01 "2-{[(2-aminopyrimidin-5-yl)methyl]amino}-5-nitro-4-{[2-(piperazin-1-yl)ethyl]amino}benzamide" 18Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "2-[(2-azanylpyrimidin-5-yl)methylamino]-5-nitro-4-(2-piperazin-1-ylethylamino)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 18Z "Create component" 2011-04-21 RCSB 18Z "Modify descriptor" 2011-06-04 RCSB #