data_1II # _chem_comp.id 1II _chem_comp.name "3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H29 F2 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-23 _chem_comp.pdbx_modified_date 2022-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.546 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1II _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7WLL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1II C07 C1 C 0 1 N N N 134.314 131.008 142.085 3.940 -0.707 -0.308 C07 1II 1 1II C08 C2 C 0 1 N N N 134.540 129.795 142.837 2.931 -0.357 0.789 C08 1II 2 1II C09 C3 C 0 1 N N N 133.516 130.842 140.863 3.379 -0.273 -1.665 C09 1II 3 1II C10 C4 C 0 1 N N N 134.805 128.527 142.015 1.596 -1.041 0.485 C10 1II 4 1II C11 C5 C 0 1 N N N 133.047 129.418 140.574 2.031 -0.959 -1.898 C11 1II 5 1II C12 C6 C 0 1 N N N 134.758 128.304 139.757 -0.244 -1.120 -1.086 C12 1II 6 1II C13 C7 C 0 1 N N N 136.216 128.790 139.867 -1.234 -0.516 -0.089 C13 1II 7 1II C14 C8 C 0 1 Y N N 133.968 133.209 143.445 6.441 -0.612 0.154 C14 1II 8 1II C15 C9 C 0 1 N N N 136.815 129.264 138.540 -2.635 -1.067 -0.363 C15 1II 9 1II C16 C10 C 0 1 N N N 132.361 131.759 143.518 5.364 1.326 0.018 C16 1II 10 1II C17 C11 C 0 1 N N N 135.930 128.900 137.350 -3.625 -0.462 0.635 C17 1II 11 1II C18 C12 C 0 1 Y N N 132.976 133.705 144.239 7.363 0.417 0.357 C18 1II 12 1II C19 C13 C 0 1 Y N N 135.139 133.975 143.236 6.862 -1.932 0.185 C19 1II 13 1II C20 C14 C 0 1 Y N N 135.802 130.071 136.402 -3.728 1.023 0.403 C20 1II 14 1II C21 C15 C 0 1 Y N N 136.570 127.852 136.465 -4.979 -1.096 0.444 C21 1II 15 1II C22 C16 C 0 1 Y N N 133.104 134.978 144.849 8.696 0.115 0.587 C22 1II 16 1II C23 C17 C 0 1 Y N N 135.268 135.223 143.837 8.193 -2.224 0.415 C23 1II 17 1II C24 C18 C 0 1 Y N N 134.251 135.726 144.644 9.107 -1.204 0.615 C24 1II 18 1II C25 C19 C 0 1 Y N N 134.624 130.249 135.706 -3.996 1.508 -0.864 C25 1II 19 1II C26 C20 C 0 1 Y N N 137.935 127.682 136.499 -5.648 -1.635 1.528 C26 1II 20 1II C27 C21 C 0 1 Y N N 136.875 130.918 136.227 -3.560 1.900 1.458 C27 1II 21 1II C28 C22 C 0 1 Y N N 135.775 127.105 135.617 -5.554 -1.132 -0.812 C28 1II 22 1II C29 C23 C 0 1 Y N N 134.503 131.309 134.832 -4.090 2.870 -1.077 C29 1II 23 1II C30 C24 C 0 1 Y N N 138.510 126.730 135.685 -6.889 -2.216 1.355 C30 1II 24 1II C31 C25 C 0 1 Y N N 136.753 131.976 135.347 -3.655 3.263 1.247 C31 1II 25 1II C32 C26 C 0 1 Y N N 136.353 126.157 134.800 -6.799 -1.708 -0.987 C32 1II 26 1II C33 C27 C 0 1 Y N N 135.569 132.170 134.654 -3.917 3.749 -0.022 C33 1II 27 1II C34 C28 C 0 1 Y N N 137.720 125.978 134.839 -7.464 -2.258 0.096 C34 1II 28 1II F01 F1 F 0 1 N N N 135.447 133.221 133.793 -4.009 5.081 -0.230 F01 1II 29 1II F02 F2 F 0 1 N N N 138.299 125.046 134.036 -8.680 -2.821 -0.074 F02 1II 30 1II N04 N1 N 0 1 N N N 134.086 128.440 140.747 1.101 -0.591 -0.823 N04 1II 31 1II N05 N2 N 0 1 N N N 133.550 131.988 143.011 5.203 -0.009 -0.054 N05 1II 32 1II N06 N3 N 0 1 N N N 131.986 132.781 144.263 6.655 1.614 0.270 N06 1II 33 1II O03 O1 O 0 1 N N N 131.605 130.607 143.297 4.476 2.147 -0.117 O03 1II 34 1II H1 H1 H 0 1 N N N 135.281 131.465 141.826 4.114 -1.783 -0.313 H1 1II 35 1II H2 H2 H 0 1 N N N 133.649 129.613 143.456 3.306 -0.702 1.752 H2 1II 36 1II H3 H3 H 0 1 N N N 135.411 129.961 143.488 2.789 0.724 0.820 H3 1II 37 1II H4 H4 H 0 1 N N N 134.126 131.178 140.011 3.243 0.809 -1.673 H4 1II 38 1II H5 H5 H 0 1 N N N 132.625 131.481 140.950 4.075 -0.558 -2.455 H5 1II 39 1II H6 H6 H 0 1 N N N 134.518 127.660 142.628 1.738 -2.121 0.468 H6 1II 40 1II H7 H7 H 0 1 N N N 135.882 128.483 141.798 0.872 -0.781 1.256 H7 1II 41 1II H8 H8 H 0 1 N N N 132.690 129.370 139.535 1.622 -0.640 -2.857 H8 1II 42 1II H9 H9 H 0 1 N N N 132.220 129.176 141.257 2.171 -2.040 -1.904 H9 1II 43 1II H10 H10 H 0 1 N N N 134.276 128.864 138.942 -0.235 -2.205 -0.978 H10 1II 44 1II H11 H11 H 0 1 N N N 134.777 127.233 139.506 -0.545 -0.858 -2.101 H11 1II 45 1II H12 H12 H 0 1 N N N 136.830 127.960 140.247 -0.933 -0.778 0.926 H12 1II 46 1II H13 H13 H 0 1 N N N 136.249 129.627 140.580 -1.242 0.569 -0.197 H13 1II 47 1II H14 H14 H 0 1 N N N 137.800 128.793 138.407 -2.936 -0.805 -1.378 H14 1II 48 1II H15 H15 H 0 1 N N N 136.933 130.357 138.574 -2.626 -2.151 -0.255 H15 1II 49 1II H16 H16 H 0 1 N N N 134.940 128.567 137.694 -3.276 -0.648 1.650 H16 1II 50 1II H17 H17 H 0 1 N N N 135.932 133.591 142.611 6.152 -2.731 0.029 H17 1II 51 1II H18 H18 H 0 1 N N N 132.310 135.363 145.471 9.411 0.908 0.743 H18 1II 52 1II H19 H19 H 0 1 N N N 136.163 135.806 143.677 8.522 -3.253 0.439 H19 1II 53 1II H20 H20 H 0 1 N N N 134.356 136.695 145.108 10.145 -1.439 0.794 H20 1II 54 1II H21 H21 H 0 1 N N N 133.802 129.563 135.845 -4.131 0.822 -1.687 H21 1II 55 1II H22 H22 H 0 1 N N N 138.546 128.285 137.154 -5.199 -1.602 2.510 H22 1II 56 1II H23 H23 H 0 1 N N N 137.796 130.757 136.769 -3.355 1.520 2.448 H23 1II 57 1II H24 H24 H 0 1 N N N 134.707 127.263 135.594 -5.031 -0.711 -1.658 H24 1II 58 1II H25 H25 H 0 1 N N N 133.582 131.465 134.291 -4.299 3.248 -2.067 H25 1II 59 1II H26 H26 H 0 1 N N N 139.578 126.572 135.709 -7.411 -2.638 2.201 H26 1II 60 1II H27 H27 H 0 1 N N N 137.582 132.653 135.199 -3.523 3.947 2.072 H27 1II 61 1II H28 H28 H 0 1 N N N 135.743 125.562 134.137 -7.246 -1.740 -1.969 H28 1II 62 1II H30 H30 H 0 1 N N N 131.121 132.860 144.759 7.029 2.503 0.368 H30 1II 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1II F01 C33 SING N N 1 1II F02 C34 SING N N 2 1II C33 C29 DOUB Y N 3 1II C33 C31 SING Y N 4 1II C32 C34 DOUB Y N 5 1II C32 C28 SING Y N 6 1II C29 C25 SING Y N 7 1II C34 C30 SING Y N 8 1II C31 C27 DOUB Y N 9 1II C28 C21 DOUB Y N 10 1II C30 C26 DOUB Y N 11 1II C25 C20 DOUB Y N 12 1II C27 C20 SING Y N 13 1II C20 C17 SING N N 14 1II C21 C26 SING Y N 15 1II C21 C17 SING N N 16 1II C17 C15 SING N N 17 1II C15 C13 SING N N 18 1II C12 C13 SING N N 19 1II C12 N04 SING N N 20 1II C11 N04 SING N N 21 1II C11 C09 SING N N 22 1II N04 C10 SING N N 23 1II C09 C07 SING N N 24 1II C10 C08 SING N N 25 1II C07 C08 SING N N 26 1II C07 N05 SING N N 27 1II N05 C14 SING N N 28 1II N05 C16 SING N N 29 1II C19 C14 DOUB Y N 30 1II C19 C23 SING Y N 31 1II O03 C16 DOUB N N 32 1II C14 C18 SING Y N 33 1II C16 N06 SING N N 34 1II C23 C24 DOUB Y N 35 1II C18 N06 SING N N 36 1II C18 C22 DOUB Y N 37 1II C24 C22 SING Y N 38 1II C07 H1 SING N N 39 1II C08 H2 SING N N 40 1II C08 H3 SING N N 41 1II C09 H4 SING N N 42 1II C09 H5 SING N N 43 1II C10 H6 SING N N 44 1II C10 H7 SING N N 45 1II C11 H8 SING N N 46 1II C11 H9 SING N N 47 1II C12 H10 SING N N 48 1II C12 H11 SING N N 49 1II C13 H12 SING N N 50 1II C13 H13 SING N N 51 1II C15 H14 SING N N 52 1II C15 H15 SING N N 53 1II C17 H16 SING N N 54 1II C19 H17 SING N N 55 1II C22 H18 SING N N 56 1II C23 H19 SING N N 57 1II C24 H20 SING N N 58 1II C25 H21 SING N N 59 1II C26 H22 SING N N 60 1II C27 H23 SING N N 61 1II C28 H24 SING N N 62 1II C29 H25 SING N N 63 1II C30 H26 SING N N 64 1II C31 H27 SING N N 65 1II C32 H28 SING N N 66 1II N06 H30 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1II InChI InChI 1.03 "InChI=1S/C28H29F2N3O/c29-22-11-7-20(8-12-22)25(21-9-13-23(30)14-10-21)4-3-17-32-18-15-24(16-19-32)33-27-6-2-1-5-26(27)31-28(33)34/h1-2,5-14,24-25H,3-4,15-19H2,(H,31,34)" 1II InChIKey InChI 1.03 YVUQSNJEYSNKRX-UHFFFAOYSA-N 1II SMILES_CANONICAL CACTVS 3.385 "Fc1ccc(cc1)C(CCCN2CCC(CC2)N3C(=O)Nc4ccccc34)c5ccc(F)cc5" 1II SMILES CACTVS 3.385 "Fc1ccc(cc1)C(CCCN2CCC(CC2)N3C(=O)Nc4ccccc34)c5ccc(F)cc5" 1II SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)NC(=O)N2C3CCN(CC3)CCCC(c4ccc(cc4)F)c5ccc(cc5)F" 1II SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)NC(=O)N2C3CCN(CC3)CCCC(c4ccc(cc4)F)c5ccc(cc5)F" # _pdbx_chem_comp_identifier.comp_id 1II _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1II "Create component" 2022-01-23 PDBJ 1II "Initial release" 2022-05-04 RCSB ##