data_1KK # _chem_comp.id 1KK _chem_comp.name "(S)-2-(3-(6-amino-9H-purin-9-yl)propoxy)-3-phosphonopropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 N5 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-14 _chem_comp.pdbx_modified_date 2021-12-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.248 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1KK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OUT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1KK C02 C1 C 0 1 Y N N -9.276 -49.649 131.910 -5.837 0.204 -0.624 C02 1KK 1 1KK C03 C2 C 0 1 Y N N -8.078 -48.884 131.838 -4.698 0.702 0.030 C03 1KK 2 1KK C04 C3 C 0 1 Y N N -6.832 -49.566 131.522 -3.664 -0.198 0.341 C04 1KK 3 1KK C06 C4 C 0 1 N N N -4.337 -48.767 131.242 -1.415 0.040 1.476 C06 1KK 4 1KK C07 C5 C 0 1 N N N -3.571 -47.424 131.388 -0.386 0.016 0.344 C07 1KK 5 1KK C08 C6 C 0 1 N N N -2.660 -47.060 130.137 0.948 -0.508 0.877 C08 1KK 6 1KK C10 C7 C 0 1 N N S -4.294 -45.414 129.223 3.197 -1.007 0.214 C10 1KK 7 1KK C11 C8 C 0 1 N N N -4.804 -45.024 127.886 4.273 -0.340 -0.645 C11 1KK 8 1KK C16 C9 C 0 1 N N N -3.391 -44.334 129.805 3.259 -2.501 0.026 C16 1KK 9 1KK C19 C10 C 0 1 Y N N -6.437 -47.389 131.810 -3.134 1.831 1.021 C19 1KK 10 1KK C22 C11 C 0 1 Y N N -7.974 -51.546 131.392 -4.887 -1.900 -0.604 C22 1KK 11 1KK N01 N1 N 0 1 N N N -10.549 -49.114 132.207 -6.887 1.043 -0.955 N01 1KK 12 1KK N05 N2 N 0 1 Y N N -5.847 -48.613 131.517 -2.693 0.542 0.965 N05 1KK 13 1KK N20 N3 N 0 1 Y N N -7.788 -47.510 132.013 -4.310 1.922 0.472 N20 1KK 14 1KK N21 N4 N 0 1 Y N N -6.776 -50.915 131.296 -3.801 -1.478 0.008 N21 1KK 15 1KK N23 N5 N 0 1 Y N N -9.199 -50.980 131.687 -5.882 -1.091 -0.921 N23 1KK 16 1KK O09 O1 O 0 1 N N N -3.468 -46.650 129.062 1.909 -0.531 -0.180 O09 1KK 17 1KK O13 O2 O 0 1 N N N -6.385 -45.884 125.950 4.477 1.677 1.145 O13 1KK 18 1KK O14 O3 O 0 1 N N N -7.406 -45.232 128.145 5.513 2.134 -1.111 O14 1KK 19 1KK O15 O4 O 0 1 N N N -6.080 -47.329 128.073 2.904 2.106 -0.782 O15 1KK 20 1KK O17 O5 O 0 1 N N N -3.433 -44.079 131.061 4.343 -3.183 0.428 O17 1KK 21 1KK O18 O6 O 0 1 N N N -2.634 -43.710 129.018 2.333 -3.085 -0.485 O18 1KK 22 1KK P12 P1 P 0 1 N N N -6.265 -45.946 127.455 4.296 1.451 -0.307 P12 1KK 23 1KK H1 H1 H 0 1 N N N -4.201 -49.142 130.217 -1.550 -0.969 1.865 H1 1KK 24 1KK H2 H2 H 0 1 N N N -3.920 -49.492 131.956 -1.061 0.693 2.274 H2 1KK 25 1KK H3 H3 H 0 1 N N N -2.927 -47.488 132.278 -0.740 -0.637 -0.454 H3 1KK 26 1KK H4 H4 H 0 1 N N N -4.308 -46.619 131.525 -0.251 1.025 -0.046 H4 1KK 27 1KK H5 H5 H 0 1 N N N -2.078 -47.945 129.840 1.302 0.144 1.676 H5 1KK 28 1KK H6 H6 H 0 1 N N N -1.974 -46.245 130.410 0.813 -1.517 1.267 H6 1KK 29 1KK H7 H7 H 0 1 N N N -5.132 -45.606 129.909 3.368 -0.765 1.263 H7 1KK 30 1KK H8 H8 H 0 1 N N N -4.024 -45.217 127.135 5.246 -0.768 -0.406 H8 1KK 31 1KK H9 H9 H 0 1 N N N -5.047 -43.951 127.894 4.051 -0.507 -1.699 H9 1KK 32 1KK H10 H10 H 0 1 N N N -5.897 -46.456 131.870 -2.588 2.654 1.458 H10 1KK 33 1KK H11 H11 H 0 1 N N N -7.969 -52.612 131.218 -4.964 -2.945 -0.864 H11 1KK 34 1KK H12 H12 H 0 1 N N N -11.228 -49.848 132.205 -6.841 1.986 -0.737 H12 1KK 35 1KK H13 H13 H 0 1 N N N -10.527 -48.683 133.109 -7.668 0.687 -1.407 H13 1KK 36 1KK H14 H14 H 0 1 N N N -7.995 -44.872 127.493 5.586 3.088 -0.977 H14 1KK 37 1KK H15 H15 H 0 1 N N N -6.066 -47.984 127.385 2.720 1.996 -1.725 H15 1KK 38 1KK H16 H16 H 0 1 N N N -2.824 -43.378 131.263 4.337 -4.140 0.286 H16 1KK 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1KK O13 P12 DOUB N N 1 1KK P12 C11 SING N N 2 1KK P12 O15 SING N N 3 1KK P12 O14 SING N N 4 1KK C11 C10 SING N N 5 1KK O18 C16 DOUB N N 6 1KK O09 C10 SING N N 7 1KK O09 C08 SING N N 8 1KK C10 C16 SING N N 9 1KK C16 O17 SING N N 10 1KK C08 C07 SING N N 11 1KK C06 C07 SING N N 12 1KK C06 N05 SING N N 13 1KK N21 C22 DOUB Y N 14 1KK N21 C04 SING Y N 15 1KK C22 N23 SING Y N 16 1KK N05 C04 SING Y N 17 1KK N05 C19 SING Y N 18 1KK C04 C03 DOUB Y N 19 1KK N23 C02 DOUB Y N 20 1KK C19 N20 DOUB Y N 21 1KK C03 C02 SING Y N 22 1KK C03 N20 SING Y N 23 1KK C02 N01 SING N N 24 1KK C06 H1 SING N N 25 1KK C06 H2 SING N N 26 1KK C07 H3 SING N N 27 1KK C07 H4 SING N N 28 1KK C08 H5 SING N N 29 1KK C08 H6 SING N N 30 1KK C10 H7 SING N N 31 1KK C11 H8 SING N N 32 1KK C11 H9 SING N N 33 1KK C19 H10 SING N N 34 1KK C22 H11 SING N N 35 1KK N01 H12 SING N N 36 1KK N01 H13 SING N N 37 1KK O14 H14 SING N N 38 1KK O15 H15 SING N N 39 1KK O17 H16 SING N N 40 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1KK InChI InChI 1.03 "InChI=1S/C11H16N5O6P/c12-9-8-10(14-5-13-9)16(6-15-8)2-1-3-22-7(11(17)18)4-23(19,20)21/h5-7H,1-4H2,(H,17,18)(H2,12,13,14)(H2,19,20,21)/t7-/m1/s1" 1KK InChIKey InChI 1.03 XOIURUPPHSOSSY-SSDOTTSWSA-N 1KK SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(CCCO[C@H](C[P](O)(O)=O)C(O)=O)cnc12" 1KK SMILES CACTVS 3.385 "Nc1ncnc2n(CCCO[CH](C[P](O)(O)=O)C(O)=O)cnc12" 1KK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)CCCO[C@H](CP(=O)(O)O)C(=O)O)N" 1KK SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)CCCOC(CP(=O)(O)O)C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id 1KK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[3-(6-aminopurin-9-yl)propoxy]-3-phosphono-propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1KK "Create component" 2021-06-14 PDBE 1KK "Initial release" 2021-12-08 RCSB ##