data_1KQ # _chem_comp.id 1KQ _chem_comp.name " 2-(2-methylimidazo[2,1-b][1,3]thiazol-6-yl)-1-[2-[(1R)-5-(6-methylpyrimidin-4-yl)-2,3-dihydro-1H-inden-1-yl]-2,7-diazaspiro[3.5]nonan-7-yl]ethanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H32 N6 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-07-02 _chem_comp.pdbx_modified_date 2022-01-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.669 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1KQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7F83 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1KQ C11 C1 C 0 1 Y N N -8.447 7.627 17.452 -4.324 -1.933 0.476 C11 1KQ 1 1KQ C12 C2 C 0 1 Y N N -8.146 7.932 18.781 -4.829 -1.564 -0.758 C12 1KQ 2 1KQ C13 C3 C 0 1 Y N N -9.147 8.465 19.622 -5.245 -0.263 -0.974 C13 1KQ 3 1KQ C14 C4 C 0 1 N N N -6.662 7.599 19.038 -4.820 -2.756 -1.692 C14 1KQ 4 1KQ C01 C5 C 0 1 N N N -12.679 9.176 23.495 -5.880 5.373 1.643 C01 1KQ 5 1KQ C02 C6 C 0 1 Y N N -12.617 9.371 21.978 -5.950 4.310 0.576 C02 1KQ 6 1KQ C04 C7 C 0 1 Y N N -13.569 10.144 20.030 -6.494 3.678 -1.568 C04 1KQ 7 1KQ C06 C8 C 0 1 Y N N -11.507 9.149 19.879 -5.604 2.072 -0.180 C06 1KQ 8 1KQ C07 C9 C 0 1 Y N N -11.519 8.918 21.251 -5.520 3.023 0.842 C07 1KQ 9 1KQ C08 C10 C 0 1 Y N N -10.442 8.674 19.105 -5.158 0.677 0.050 C08 1KQ 10 1KQ C09 C11 C 0 1 Y N N -10.732 8.335 17.776 -4.649 0.300 1.291 C09 1KQ 11 1KQ C10 C12 C 0 1 Y N N -9.745 7.822 16.955 -4.236 -0.999 1.497 C10 1KQ 12 1KQ C15 C13 C 0 1 N N N -6.069 7.235 17.685 -4.669 -3.987 -0.773 C15 1KQ 13 1KQ C16 C14 C 0 1 N N R -7.234 7.019 16.725 -3.948 -3.399 0.456 C16 1KQ 14 1KQ C18 C15 C 0 1 N N N -6.077 5.428 15.777 -1.788 -3.151 1.542 C18 1KQ 15 1KQ C19 C16 C 0 1 N N N -6.987 4.503 15.175 -0.787 -2.445 0.616 C19 1KQ 16 1KQ C20 C17 C 0 1 N N N -8.031 5.376 15.611 -1.915 -2.401 -0.424 C20 1KQ 17 1KQ C21 C18 C 0 1 N N N -7.506 3.185 15.603 0.389 -3.327 0.205 C21 1KQ 18 1KQ C22 C19 C 0 1 N N N -6.699 2.002 15.055 1.199 -2.610 -0.882 C22 1KQ 19 1KQ C24 C20 C 0 1 N N N -6.078 3.461 13.138 0.455 -0.366 0.022 C24 1KQ 20 1KQ C25 C21 C 0 1 N N N -7.013 4.535 13.696 -0.361 -1.067 1.115 C25 1KQ 21 1KQ C26 C22 C 0 1 N N N -6.500 0.918 12.646 2.820 -0.852 -0.368 C26 1KQ 22 1KQ C28 C23 C 0 1 N N N -6.203 1.118 11.137 3.154 0.534 0.121 C28 1KQ 23 1KQ C29 C24 C 0 1 Y N N -4.702 0.915 10.879 4.646 0.740 0.067 C29 1KQ 24 1KQ C31 C25 C 0 1 Y N N -2.756 -0.008 10.732 6.760 0.443 0.393 C31 1KQ 25 1KQ C33 C26 C 0 1 Y N N -3.771 1.860 10.456 5.278 1.738 -0.572 C33 1KQ 26 1KQ C34 C27 C 0 1 Y N N -1.292 1.613 10.029 7.829 2.168 -0.720 C34 1KQ 27 1KQ C35 C28 C 0 1 Y N N -0.366 0.592 10.118 8.962 1.637 -0.295 C35 1KQ 28 1KQ C37 C29 C 0 1 N N N 1.117 0.561 9.831 10.358 2.139 -0.558 C37 1KQ 29 1KQ N03 N1 N 0 1 Y N N -13.604 9.971 21.341 -6.428 4.597 -0.625 N03 1KQ 30 1KQ N05 N2 N 0 1 Y N N -12.548 9.726 19.298 -6.092 2.441 -1.363 N05 1KQ 31 1KQ N17 N3 N 0 1 N N N -7.136 5.915 16.601 -2.495 -3.551 0.305 N17 1KQ 32 1KQ N23 N4 N 0 1 N N N -6.438 2.069 13.573 1.537 -1.262 -0.408 N23 1KQ 33 1KQ N30 N5 N 0 1 Y N N -4.044 -0.222 11.045 5.567 -0.038 0.652 N30 1KQ 34 1KQ N32 N6 N 0 1 Y N N -2.560 1.241 10.371 6.643 1.561 -0.374 N32 1KQ 35 1KQ O27 O1 O 0 1 N N N -6.784 -0.171 13.028 3.707 -1.599 -0.725 O27 1KQ 36 1KQ S36 S1 S 0 1 Y N N -1.217 -0.809 10.638 8.495 0.213 0.651 S36 1KQ 37 1KQ H1 H1 H 0 1 N N N -8.923 8.710 20.650 -5.639 0.024 -1.937 H1 1KQ 38 1KQ H2 H2 H 0 1 N N N -6.143 8.472 19.460 -5.757 -2.810 -2.246 H2 1KQ 39 1KQ H3 H3 H 0 1 N N N -6.576 6.751 19.733 -3.976 -2.692 -2.379 H3 1KQ 40 1KQ H4 H4 H 0 1 N N N -13.618 9.599 23.881 -4.917 5.880 1.588 H4 1KQ 41 1KQ H5 H5 H 0 1 N N N -12.637 8.102 23.729 -6.681 6.095 1.488 H5 1KQ 42 1KQ H6 H6 H 0 1 N N N -11.826 9.687 23.965 -5.992 4.911 2.624 H6 1KQ 43 1KQ H7 H7 H 0 1 N N N -14.396 10.640 19.543 -6.890 3.947 -2.536 H7 1KQ 44 1KQ H8 H8 H 0 1 N N N -10.703 8.404 21.737 -5.129 2.758 1.813 H8 1KQ 45 1KQ H9 H9 H 0 1 N N N -11.731 8.475 17.392 -4.577 1.023 2.090 H9 1KQ 46 1KQ H10 H10 H 0 1 N N N -9.973 7.571 15.930 -3.841 -1.291 2.459 H10 1KQ 47 1KQ H11 H11 H 0 1 N N N -5.428 8.052 17.322 -5.645 -4.383 -0.493 H11 1KQ 48 1KQ H12 H12 H 0 1 N N N -5.475 6.313 17.770 -4.061 -4.755 -1.251 H12 1KQ 49 1KQ H13 H13 H 0 1 N N N -7.047 7.613 15.818 -4.287 -3.889 1.369 H13 1KQ 50 1KQ H14 H14 H 0 1 N N N -5.254 4.954 16.333 -1.361 -3.988 2.095 H14 1KQ 51 1KQ H15 H15 H 0 1 N N N -5.667 6.175 15.081 -2.358 -2.469 2.174 H15 1KQ 52 1KQ H16 H16 H 0 1 N N N -8.359 6.103 14.853 -2.523 -1.497 -0.375 H16 1KQ 53 1KQ H17 H17 H 0 1 N N N -8.908 4.860 16.027 -1.589 -2.641 -1.436 H17 1KQ 54 1KQ H18 H18 H 0 1 N N N -7.484 3.142 16.702 1.026 -3.513 1.070 H18 1KQ 55 1KQ H19 H19 H 0 1 N N N -8.545 3.090 15.253 0.016 -4.274 -0.184 H19 1KQ 56 1KQ H20 H20 H 0 1 N N N -5.730 1.974 15.575 2.115 -3.167 -1.082 H20 1KQ 57 1KQ H21 H21 H 0 1 N N N -7.255 1.077 15.266 0.606 -2.539 -1.793 H21 1KQ 58 1KQ H22 H22 H 0 1 N N N -6.115 3.503 12.039 -0.191 -0.140 -0.826 H22 1KQ 59 1KQ H23 H23 H 0 1 N N N -5.055 3.679 13.479 0.879 0.556 0.418 H23 1KQ 60 1KQ H24 H24 H 0 1 N N N -8.038 4.345 13.345 -1.245 -0.474 1.347 H24 1KQ 61 1KQ H25 H25 H 0 1 N N N -6.683 5.524 13.346 0.250 -1.177 2.011 H25 1KQ 62 1KQ H26 H26 H 0 1 N N N -6.778 0.387 10.550 2.662 1.271 -0.514 H26 1KQ 63 1KQ H27 H27 H 0 1 N N N -6.492 2.136 10.838 2.808 0.650 1.148 H27 1KQ 64 1KQ H28 H28 H 0 1 N N N -3.973 2.898 10.235 4.812 2.533 -1.136 H28 1KQ 65 1KQ H29 H29 H 0 1 N N N -1.036 2.615 9.717 7.834 3.060 -1.329 H29 1KQ 66 1KQ H30 H30 H 0 1 N N N 1.504 -0.453 10.008 10.647 2.838 0.228 H30 1KQ 67 1KQ H31 H31 H 0 1 N N N 1.293 0.843 8.782 11.051 1.298 -0.568 H31 1KQ 68 1KQ H32 H32 H 0 1 N N N 1.633 1.271 10.493 10.387 2.646 -1.523 H32 1KQ 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1KQ C11 C12 DOUB Y N 1 1KQ C11 C10 SING Y N 2 1KQ C11 C16 SING N N 3 1KQ C12 C13 SING Y N 4 1KQ C12 C14 SING N N 5 1KQ C13 C08 DOUB Y N 6 1KQ C14 C15 SING N N 7 1KQ C01 C02 SING N N 8 1KQ C02 C07 DOUB Y N 9 1KQ C02 N03 SING Y N 10 1KQ C04 N03 DOUB Y N 11 1KQ C04 N05 SING Y N 12 1KQ C06 C07 SING Y N 13 1KQ C06 C08 SING N N 14 1KQ C06 N05 DOUB Y N 15 1KQ C08 C09 SING Y N 16 1KQ C09 C10 DOUB Y N 17 1KQ C15 C16 SING N N 18 1KQ C16 N17 SING N N 19 1KQ C18 C19 SING N N 20 1KQ C18 N17 SING N N 21 1KQ C19 C20 SING N N 22 1KQ C19 C21 SING N N 23 1KQ C19 C25 SING N N 24 1KQ C20 N17 SING N N 25 1KQ C21 C22 SING N N 26 1KQ C22 N23 SING N N 27 1KQ C24 C25 SING N N 28 1KQ C24 N23 SING N N 29 1KQ C26 C28 SING N N 30 1KQ C26 N23 SING N N 31 1KQ C26 O27 DOUB N N 32 1KQ C28 C29 SING N N 33 1KQ C29 C33 DOUB Y N 34 1KQ C29 N30 SING Y N 35 1KQ C31 N30 DOUB Y N 36 1KQ C31 N32 SING Y N 37 1KQ C31 S36 SING Y N 38 1KQ C33 N32 SING Y N 39 1KQ C34 C35 DOUB Y N 40 1KQ C34 N32 SING Y N 41 1KQ C35 C37 SING N N 42 1KQ C35 S36 SING Y N 43 1KQ C13 H1 SING N N 44 1KQ C14 H2 SING N N 45 1KQ C14 H3 SING N N 46 1KQ C01 H4 SING N N 47 1KQ C01 H5 SING N N 48 1KQ C01 H6 SING N N 49 1KQ C04 H7 SING N N 50 1KQ C07 H8 SING N N 51 1KQ C09 H9 SING N N 52 1KQ C10 H10 SING N N 53 1KQ C15 H11 SING N N 54 1KQ C15 H12 SING N N 55 1KQ C16 H13 SING N N 56 1KQ C18 H14 SING N N 57 1KQ C18 H15 SING N N 58 1KQ C20 H16 SING N N 59 1KQ C20 H17 SING N N 60 1KQ C21 H18 SING N N 61 1KQ C21 H19 SING N N 62 1KQ C22 H20 SING N N 63 1KQ C22 H21 SING N N 64 1KQ C24 H22 SING N N 65 1KQ C24 H23 SING N N 66 1KQ C25 H24 SING N N 67 1KQ C25 H25 SING N N 68 1KQ C28 H26 SING N N 69 1KQ C28 H27 SING N N 70 1KQ C33 H28 SING N N 71 1KQ C34 H29 SING N N 72 1KQ C37 H30 SING N N 73 1KQ C37 H31 SING N N 74 1KQ C37 H32 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1KQ InChI InChI 1.03 "InChI=1S/C29H32N6OS/c1-19-11-25(31-18-30-19)22-3-5-24-21(12-22)4-6-26(24)35-16-29(17-35)7-9-33(10-8-29)27(36)13-23-15-34-14-20(2)37-28(34)32-23/h3,5,11-12,14-15,18,26H,4,6-10,13,16-17H2,1-2H3/t26-/m1/s1" 1KQ InChIKey InChI 1.03 ZIUDADZJCKGWKR-AREMUKBSSA-N 1KQ SMILES_CANONICAL CACTVS 3.385 "Cc1sc2nc(CC(=O)N3CCC4(CC3)CN(C4)[C@@H]5CCc6cc(ccc56)c7cc(C)ncn7)cn2c1" 1KQ SMILES CACTVS 3.385 "Cc1sc2nc(CC(=O)N3CCC4(CC3)CN(C4)[CH]5CCc6cc(ccc56)c7cc(C)ncn7)cn2c1" 1KQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ncn1)c2ccc3c(c2)CC[C@H]3N4CC5(C4)CCN(CC5)C(=O)Cc6cn7cc(sc7n6)C" 1KQ SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(ncn1)c2ccc3c(c2)CCC3N4CC5(C4)CCN(CC5)C(=O)Cc6cn7cc(sc7n6)C" # _pdbx_chem_comp_identifier.comp_id 1KQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-(2-methylimidazo[2,1-b][1,3]thiazol-6-yl)-1-[2-[(1~{R})-5-(6-methylpyrimidin-4-yl)-2,3-dihydro-1~{H}-inden-1-yl]-2,7-diazaspiro[3.5]nonan-7-yl]ethanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1KQ "Create component" 2021-07-02 PDBJ 1KQ "Initial release" 2022-01-19 RCSB ##