data_1O4 # _chem_comp.id 1O4 _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 N7 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-06-23 _chem_comp.pdbx_modified_date 2022-03-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 686.482 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1O4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NAI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1O4 C8 C1 C 0 1 N N R 8.726 28.720 -12.184 -6.911 -0.671 1.579 C8 1O4 1 1O4 C5 C2 C 0 1 N N N 10.072 27.920 -9.253 -3.935 -2.546 1.176 C5 1O4 2 1O4 C6 C3 C 0 1 N N R 10.466 28.566 -10.560 -4.584 -1.341 1.859 C6 1O4 3 1O4 N6 N1 N 0 1 N N N 14.605 24.910 -10.377 8.223 4.315 1.654 N6 1O4 4 1O4 N1 N2 N 0 1 Y N N 8.581 25.226 -14.749 -6.600 1.924 -1.961 N1 1O4 5 1O4 C2 C4 C 0 1 N N S 12.799 25.356 -4.173 4.865 0.043 -3.132 C2 1O4 6 1O4 N3 N3 N 0 1 Y N N 11.960 24.904 -16.241 -8.866 4.381 -0.438 N3 1O4 7 1O4 C4 C5 C 0 1 N N N 10.528 26.273 -4.913 3.071 -1.482 -2.222 C4 1O4 8 1O4 N N4 N 0 1 Y N N 9.659 26.822 -13.584 -6.366 1.242 0.099 N 1O4 9 1O4 C C6 C 0 1 N N R 12.217 23.802 -5.957 5.409 1.024 -0.970 C 1O4 10 1O4 O O1 O 0 1 N N N 9.122 25.953 -4.927 1.969 -1.566 -1.317 O 1O4 11 1O4 C1 C7 C 0 1 N N R 13.374 24.671 -5.428 5.981 0.810 -2.388 C1 1O4 12 1O4 C10 C8 C 0 1 Y N N 8.486 26.155 -13.827 -6.003 1.052 -1.202 C10 1O4 13 1O4 C11 C9 C 0 1 Y N N 9.914 25.280 -15.132 -7.382 2.726 -1.199 C11 1O4 14 1O4 C12 C10 C 0 1 Y N N 10.587 26.256 -14.418 -7.241 2.298 0.132 C12 1O4 15 1O4 C13 C11 C 0 1 Y N N 12.473 25.869 -15.477 -8.702 3.942 0.797 C13 1O4 16 1O4 C14 C12 C 0 1 Y N N 10.659 24.571 -16.093 -8.235 3.812 -1.459 C14 1O4 17 1O4 C15 C13 C 0 1 Y N N 12.704 24.354 -8.265 7.004 1.990 0.526 C15 1O4 18 1O4 C16 C14 C 0 1 Y N N 12.382 24.314 -9.623 8.017 1.899 1.491 C16 1O4 19 1O4 C17 C15 C 0 1 Y N N 13.355 24.432 -10.665 8.622 3.043 2.051 C17 1O4 20 1O4 C18 C16 C 0 1 Y N N 12.987 24.172 -11.977 9.614 2.885 2.997 C18 1O4 21 1O4 C19 C17 C 0 1 Y N N 11.676 23.861 -12.304 10.020 1.618 3.401 C19 1O4 22 1O4 C20 C18 C 0 1 Y N N 10.704 23.832 -11.341 9.453 0.495 2.875 C20 1O4 23 1O4 C21 C19 C 0 1 Y N N 11.028 24.052 -9.977 8.441 0.612 1.912 C21 1O4 24 1O4 C22 C20 C 0 1 Y N N 10.071 23.942 -8.934 7.822 -0.514 1.337 C22 1O4 25 1O4 C23 C21 C 0 1 Y N N 10.466 24.000 -7.640 6.847 -0.319 0.407 C23 1O4 26 1O4 C3 C22 C 0 1 N N R 11.291 25.138 -4.283 3.749 -0.119 -2.076 C3 1O4 27 1O4 C7 C23 C 0 1 N N S 9.445 29.563 -11.130 -6.014 -1.700 2.309 C7 1O4 28 1O4 C9 C24 C 0 1 N N R 9.930 27.971 -12.729 -5.905 0.461 1.250 C9 1O4 29 1O4 N2 N5 N 0 1 Y N N 11.871 26.598 -14.540 -7.913 2.930 1.089 N2 1O4 30 1O4 N4 N6 N 0 1 N N N 10.159 23.607 -16.875 -8.414 4.277 -2.750 N4 1O4 31 1O4 N5 N7 N 1 1 Y N N 11.770 24.144 -7.325 6.470 0.896 0.033 N5 1O4 32 1O4 O1 O2 O 0 1 N N N 8.455 27.079 -6.939 -0.184 -2.562 -0.182 O1 1O4 33 1O4 O10 O3 O 0 1 N N N 11.132 23.947 -5.080 4.428 -0.029 -0.805 O10 1O4 34 1O4 O11 O4 O 0 1 N N N 13.281 24.805 -2.956 4.393 0.802 -4.247 O11 1O4 35 1O4 O12 O5 O 0 1 N N N 14.490 23.831 -5.156 6.233 2.066 -3.022 O12 1O4 36 1O4 O2 O6 O 0 1 N N N 6.585 26.552 -8.491 -2.202 -3.742 -1.134 O2 1O4 37 1O4 O3 O7 O 0 1 N N N 8.740 27.379 -9.387 -2.576 -2.240 0.860 O3 1O4 38 1O4 O4 O8 O 0 1 N N N 10.644 27.552 -11.582 -4.691 -0.251 0.928 O4 1O4 39 1O4 O5 O9 O 0 1 N N N 8.088 29.497 -13.192 -7.949 -0.198 2.440 O5 1O4 40 1O4 O6 O10 O 0 1 N N N 10.127 30.660 -11.730 -6.142 -1.561 3.725 O6 1O4 41 1O4 O7 O11 O 0 1 N N N 7.291 28.976 -8.059 -1.338 -4.548 1.097 O7 1O4 42 1O4 O8 O12 O 0 1 N N N 8.433 28.371 -4.780 1.890 -4.108 -0.651 O8 1O4 43 1O4 O9 O13 O 0 1 N N N 6.702 26.554 -5.208 0.477 -3.198 -2.534 O9 1O4 44 1O4 P P1 P 0 1 N N N 8.077 27.068 -5.389 1.026 -2.866 -1.200 P 1O4 45 1O4 P1 P2 P 0 1 N N N 7.646 27.550 -8.234 -1.588 -3.283 0.132 P1 1O4 46 1O4 H6 H1 H 0 1 N N N 8.026 28.022 -11.701 -7.329 -1.097 0.667 H6 1O4 47 1O4 H51 H2 H 0 1 N N N 10.778 27.111 -9.012 -3.968 -3.405 1.846 H51 1O4 48 1O4 H52 H3 H 0 1 N N N 10.087 28.671 -8.449 -4.477 -2.780 0.259 H52 1O4 49 1O4 H4 H4 H 0 1 N N N 11.417 29.099 -10.411 -3.989 -1.039 2.721 H4 1O4 50 1O4 HN62 H5 H 0 0 N N N 14.694 25.038 -9.389 7.525 4.419 0.988 HN62 1O4 51 1O4 HN61 H6 H 0 0 N N N 15.293 24.256 -10.691 8.643 5.098 2.043 HN61 1O4 52 1O4 H2 H7 H 0 1 N N N 13.013 26.434 -4.223 5.225 -0.932 -3.460 H2 1O4 53 1O4 H42 H8 H 0 1 N N N 10.880 26.425 -5.944 3.788 -2.271 -1.996 H42 1O4 54 1O4 H41 H9 H 0 1 N N N 10.690 27.192 -4.331 2.711 -1.601 -3.244 H41 1O4 55 1O4 H H10 H 0 1 N N N 12.556 22.755 -5.953 4.932 2.002 -0.896 H 1O4 56 1O4 H1 H11 H 0 1 N N N 13.628 25.436 -6.177 6.892 0.213 -2.347 H1 1O4 57 1O4 H10 H12 H 0 1 N N N 7.566 26.375 -13.306 -5.321 0.290 -1.550 H10 1O4 58 1O4 H13 H13 H 0 1 N N N 13.518 26.089 -15.640 -9.234 4.434 1.598 H13 1O4 59 1O4 H15 H14 H 0 1 N N N 13.722 24.557 -7.966 6.660 2.958 0.193 H15 1O4 60 1O4 H18 H15 H 0 1 N N N 13.734 24.212 -12.756 10.081 3.758 3.430 H18 1O4 61 1O4 H19 H16 H 0 1 N N N 11.419 23.639 -13.329 10.799 1.521 4.143 H19 1O4 62 1O4 H20 H17 H 0 1 N N N 9.679 23.640 -11.622 9.781 -0.481 3.200 H20 1O4 63 1O4 H22 H18 H 0 1 N N N 9.026 23.812 -9.173 8.115 -1.512 1.627 H22 1O4 64 1O4 H23 H19 H 0 1 N N N 9.730 23.930 -6.853 6.368 -1.178 -0.039 H23 1O4 65 1O4 H3 H20 H 0 1 N N N 10.891 24.962 -3.274 3.015 0.682 -2.174 H3 1O4 66 1O4 H5 H21 H 0 1 N N N 8.743 29.887 -10.347 -6.267 -2.714 2.000 H5 1O4 67 1O4 H7 H22 H 0 1 N N N 10.544 28.689 -13.293 -5.757 1.107 2.115 H7 1O4 68 1O4 HN41 H23 H 0 0 N N N 10.875 23.265 -17.483 -9.006 5.028 -2.918 HN41 1O4 69 1O4 HN42 H24 H 0 0 N N N 9.820 22.858 -16.305 -7.948 3.853 -3.488 HN42 1O4 70 1O4 HO11 H25 H 0 0 N N N 12.892 25.267 -2.223 5.062 0.959 -4.927 HO11 1O4 71 1O4 HO12 H26 H 0 0 N N N 15.210 24.357 -4.829 6.594 1.991 -3.916 HO12 1O4 72 1O4 HO5 H27 H 0 1 N N N 7.342 29.951 -12.818 -8.552 -0.889 2.746 HO5 1O4 73 1O4 HO6 H28 H 0 1 N N N 10.565 31.168 -11.057 -7.037 -1.718 4.056 HO6 1O4 74 1O4 H8 H29 H 0 1 N N N 6.350 29.081 -8.140 -0.937 -4.321 1.947 H8 1O4 75 1O4 H9 H30 H 0 1 N N N 7.678 28.725 -4.324 2.282 -3.961 0.221 H9 1O4 76 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1O4 N4 C14 SING N N 1 1O4 N3 C14 DOUB Y N 2 1O4 N3 C13 SING Y N 3 1O4 C14 C11 SING Y N 4 1O4 C13 N2 DOUB Y N 5 1O4 C11 N1 SING Y N 6 1O4 C11 C12 DOUB Y N 7 1O4 N1 C10 DOUB Y N 8 1O4 N2 C12 SING Y N 9 1O4 C12 N SING Y N 10 1O4 C10 N SING Y N 11 1O4 N C9 SING N N 12 1O4 O5 C8 SING N N 13 1O4 C9 C8 SING N N 14 1O4 C9 O4 SING N N 15 1O4 C19 C18 DOUB Y N 16 1O4 C19 C20 SING Y N 17 1O4 C8 C7 SING N N 18 1O4 C18 C17 SING Y N 19 1O4 O6 C7 SING N N 20 1O4 O4 C6 SING N N 21 1O4 C20 C21 DOUB Y N 22 1O4 C7 C6 SING N N 23 1O4 C17 N6 SING N N 24 1O4 C17 C16 DOUB Y N 25 1O4 C6 C5 SING N N 26 1O4 C21 C16 SING Y N 27 1O4 C21 C22 SING Y N 28 1O4 C16 C15 SING Y N 29 1O4 O3 C5 SING N N 30 1O4 O3 P1 SING N N 31 1O4 C22 C23 DOUB Y N 32 1O4 O2 P1 DOUB N N 33 1O4 C15 N5 DOUB Y N 34 1O4 P1 O7 SING N N 35 1O4 P1 O1 SING N N 36 1O4 C23 N5 SING Y N 37 1O4 N5 C SING N N 38 1O4 O1 P SING N N 39 1O4 C C1 SING N N 40 1O4 C O10 SING N N 41 1O4 C1 O12 SING N N 42 1O4 C1 C2 SING N N 43 1O4 P O9 DOUB N N 44 1O4 P O SING N N 45 1O4 P O8 SING N N 46 1O4 O10 C3 SING N N 47 1O4 O C4 SING N N 48 1O4 C4 C3 SING N N 49 1O4 C3 C2 SING N N 50 1O4 C2 O11 SING N N 51 1O4 C8 H6 SING N N 52 1O4 C5 H51 SING N N 53 1O4 C5 H52 SING N N 54 1O4 C6 H4 SING N N 55 1O4 N6 HN62 SING N N 56 1O4 N6 HN61 SING N N 57 1O4 C2 H2 SING N N 58 1O4 C4 H42 SING N N 59 1O4 C4 H41 SING N N 60 1O4 C H SING N N 61 1O4 C1 H1 SING N N 62 1O4 C10 H10 SING N N 63 1O4 C13 H13 SING N N 64 1O4 C15 H15 SING N N 65 1O4 C18 H18 SING N N 66 1O4 C19 H19 SING N N 67 1O4 C20 H20 SING N N 68 1O4 C22 H22 SING N N 69 1O4 C23 H23 SING N N 70 1O4 C3 H3 SING N N 71 1O4 C7 H5 SING N N 72 1O4 C9 H7 SING N N 73 1O4 N4 HN41 SING N N 74 1O4 N4 HN42 SING N N 75 1O4 O11 HO11 SING N N 76 1O4 O12 HO12 SING N N 77 1O4 O5 HO5 SING N N 78 1O4 O6 HO6 SING N N 79 1O4 O7 H8 SING N N 80 1O4 O8 H9 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1O4 SMILES ACDLabs 12.01 "Nc1cccc2cc[n+](cc12)C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c(N)ncnc43)C(O)C2O)C(O)C1O" 1O4 InChI InChI 1.03 "InChI=1S/C24H29N7O13P2/c25-13-3-1-2-11-4-5-30(6-12(11)13)23-19(34)17(32)14(42-23)7-40-45(36,37)44-46(38,39)41-8-15-18(33)20(35)24(43-15)31-10-29-16-21(26)27-9-28-22(16)31/h1-6,9-10,14-15,17-20,23-25,32-35H,7-8H2,(H4,26,27,28,36,37,38,39)/p+1/t14-,15-,17-,18-,19-,20-,23-,24-/m1/s1" 1O4 InChIKey InChI 1.03 ZWKGBLKVIKZVCF-PAXFUWABSA-O 1O4 SMILES_CANONICAL CACTVS 3.385 "Nc1cccc2cc[n+](cc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)[C@@H](O)[C@H]3O" 1O4 SMILES CACTVS 3.385 "Nc1cccc2cc[n+](cc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)[CH](O)[CH]3O" 1O4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2cc[n+](cc2c(c1)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" 1O4 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc[n+](cc2c(c1)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1O4 "SYSTEMATIC NAME" ACDLabs 12.01 "8-amino-2-[(2R,3R,4S,5R)-5-({[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]isoquinolin-2-ium (non-preferred name)" 1O4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(8-azanylisoquinolin-2-ium-2-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1O4 "Create component" 2021-06-23 RCSB 1O4 "Modify aromatic_flag" 2022-03-03 RCSB 1O4 "Initial release" 2022-03-23 RCSB ##