data_1OF # _chem_comp.id 1OF _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(8-oxidanylidene-7~{H}-2,7-naphthyridin-2-yl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 N7 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2021-06-23 _chem_comp.pdbx_modified_date 2022-03-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 688.454 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1OF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7NAH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1OF C8 C1 C 0 1 N N R 7.784 28.307 -12.229 6.812 -2.160 0.612 C8 1OF 1 1OF C5 C2 C 0 1 N N N 9.510 27.872 -9.414 3.568 -1.604 1.917 C5 1OF 2 1OF C6 C3 C 0 1 N N R 9.633 28.580 -10.739 4.378 -2.070 0.706 C6 1OF 3 1OF N6 N1 N 0 1 N N N 13.322 24.311 -11.868 -10.105 -3.130 -2.061 N6 1OF 4 1OF N1 N2 N 0 1 Y N N 8.216 24.929 -14.879 7.733 1.918 -0.760 N1 1OF 5 1OF C2 C4 C 0 1 N N S 12.769 25.339 -4.076 -5.266 3.308 -0.199 C2 1OF 6 1OF N3 N3 N 0 1 Y N N 11.719 24.938 -16.071 10.263 0.630 -3.091 N3 1OF 7 1OF C4 C5 C 0 1 N N N 10.563 26.307 -4.905 -3.180 2.539 0.997 C4 1OF 8 1OF N N4 N 0 1 Y N N 9.026 26.637 -13.667 7.007 -0.139 -0.811 N 1OF 9 1OF C C6 C 0 1 N N R 12.215 23.823 -5.908 -5.845 1.095 -1.036 C 1OF 10 1OF O O1 O 0 1 N N N 9.146 26.075 -4.787 -2.029 1.698 0.896 O 1OF 11 1OF C1 C7 C 0 1 N N R 13.363 24.654 -5.331 -6.454 2.485 -0.744 C1 1OF 12 1OF C10 C8 C 0 1 Y N N 7.953 25.849 -13.984 6.823 1.111 -0.299 C10 1OF 13 1OF C11 C9 C 0 1 Y N N 9.558 25.124 -15.162 8.557 1.240 -1.595 C11 1OF 14 1OF C12 C10 C 0 1 Y N N 10.072 26.164 -14.409 8.100 -0.088 -1.638 C12 1OF 15 1OF C13 C11 C 0 1 Y N N 12.080 25.939 -15.279 9.798 -0.606 -3.098 C13 1OF 16 1OF C14 C12 C 0 1 Y N N 10.440 24.491 -16.040 9.684 1.579 -2.363 C14 1OF 17 1OF C15 C13 C 0 1 Y N N 10.526 24.051 -7.704 -6.942 -0.322 0.560 C15 1OF 18 1OF C16 C14 C 0 1 Y N N 10.198 24.043 -9.013 -7.820 -1.300 0.938 C16 1OF 19 1OF C17 C15 C 0 1 Y N N 11.200 24.153 -10.027 -8.586 -1.927 -0.049 C17 1OF 20 1OF C18 C16 C 0 1 N N N 10.999 24.017 -11.421 -9.552 -2.981 0.244 C18 1OF 21 1OF C19 C17 C 0 1 N N N 12.081 24.078 -12.297 -10.260 -3.522 -0.764 C19 1OF 22 1OF C20 C18 C 0 1 N N N 13.609 24.493 -10.520 -9.229 -2.171 -2.426 C20 1OF 23 1OF C21 C19 C 0 1 Y N N 12.518 24.355 -9.592 -8.416 -1.519 -1.395 C21 1OF 24 1OF C22 C20 C 0 1 Y N N 12.776 24.363 -8.243 -7.497 -0.513 -1.683 C22 1OF 25 1OF C3 C21 C 0 1 N N R 11.261 25.152 -4.240 -4.078 2.320 -0.223 C3 1OF 26 1OF C7 C22 C 0 1 N N S 8.360 29.294 -11.213 5.580 -2.913 1.172 C7 1OF 27 1OF C9 C23 C 0 1 N N R 9.089 27.844 -12.860 6.187 -1.320 -0.531 C9 1OF 28 1OF N2 N5 N 0 1 Y N N 11.331 26.625 -14.417 8.746 -0.969 -2.396 N2 1OF 29 1OF N4 N6 N 0 1 N N N 10.074 23.506 -16.851 10.180 2.871 -2.360 N4 1OF 30 1OF N5 N7 N 1 1 Y N N 11.820 24.163 -7.295 -6.805 0.038 -0.706 N5 1OF 31 1OF O1 O2 O 0 1 N N N 8.312 26.904 -6.904 0.201 0.519 1.640 O1 1OF 32 1OF O10 O3 O 0 1 N N N 11.095 23.977 -5.058 -4.686 1.011 -0.171 O10 1OF 33 1OF O11 O4 O 0 1 N N N 13.202 24.801 -2.834 -5.002 4.428 -1.047 O11 1OF 34 1OF O12 O5 O 0 1 N N N 14.430 23.763 -5.028 -6.960 3.071 -1.945 O12 1OF 35 1OF O13 O6 O 0 1 N N N 14.732 24.834 -10.174 -9.115 -1.853 -3.595 O13 1OF 36 1OF O2 O7 O 0 1 N N N 6.451 25.860 -8.217 1.987 0.635 3.420 O2 1OF 37 1OF O3 O8 O 0 1 N N N 8.284 27.097 -9.393 2.397 -0.917 1.472 O3 1OF 38 1OF O4 O9 O 0 1 N N N 9.981 27.638 -11.779 4.901 -0.932 0.001 O4 1OF 39 1OF O5 O10 O 0 1 N N N 6.936 28.917 -13.194 7.781 -3.077 0.101 O5 1OF 40 1OF O6 O11 O 0 1 N N N 8.710 30.527 -11.831 5.509 -4.231 0.626 O6 1OF 41 1OF O7 O12 O 0 1 N N N 6.663 28.400 -7.989 0.601 -1.472 3.310 O7 1OF 42 1OF O8 O13 O 0 1 N N N 8.662 28.465 -4.944 -1.459 1.381 3.335 O8 1OF 43 1OF O9 O14 O 0 1 N N N 6.739 26.804 -4.937 -0.124 3.096 2.051 O9 1OF 44 1OF P P1 P 0 1 N N N 8.126 27.149 -5.335 -0.866 1.667 2.010 P 1OF 45 1OF P1 P2 P 0 1 N N N 7.297 27.076 -8.132 1.311 -0.288 2.481 P1 1OF 46 1OF H6 H1 H 0 1 N N N 7.288 27.472 -11.713 7.252 -1.515 1.373 H6 1OF 47 1OF H52 H2 H 0 1 N N N 10.371 27.201 -9.275 3.277 -2.468 2.514 H52 1OF 48 1OF H51 H3 H 0 1 N N N 9.489 28.614 -8.602 4.175 -0.931 2.523 H51 1OF 49 1OF H4 H4 H 0 1 N N N 10.431 29.332 -10.654 3.746 -2.661 0.043 H4 1OF 50 1OF HN6 H5 H 0 1 N N N 14.066 24.356 -12.534 -10.640 -3.559 -2.746 HN6 1OF 51 1OF H2 H6 H 0 1 N N N 12.998 26.414 -4.124 -5.466 3.640 0.819 H2 1OF 52 1OF H42 H7 H 0 1 N N N 10.849 26.360 -5.966 -3.732 2.292 1.903 H42 1OF 53 1OF H41 H8 H 0 1 N N N 10.833 27.249 -4.405 -2.866 3.582 1.034 H41 1OF 54 1OF H H9 H 0 1 N N N 12.531 22.770 -5.893 -5.545 1.024 -2.081 H 1OF 55 1OF H1 H10 H 0 1 N N N 13.673 25.419 -6.058 -7.241 2.407 0.006 H1 1OF 56 1OF H10 H11 H 0 1 N N N 6.978 25.974 -13.537 6.038 1.389 0.389 H10 1OF 57 1OF H13 H12 H 0 1 N N N 13.116 26.237 -15.341 10.299 -1.346 -3.705 H13 1OF 58 1OF H15 H13 H 0 1 N N N 9.744 23.967 -6.964 -6.346 0.169 1.314 H15 1OF 59 1OF H16 H14 H 0 1 N N N 9.161 23.952 -9.300 -7.919 -1.582 1.976 H16 1OF 60 1OF H18 H15 H 0 1 N N N 10.002 23.865 -11.808 -9.705 -3.315 1.260 H18 1OF 61 1OF H19 H16 H 0 1 N N N 11.910 23.932 -13.353 -10.979 -4.296 -0.537 H19 1OF 62 1OF H22 H17 H 0 1 N N N 13.791 24.537 -7.917 -7.352 -0.187 -2.702 H22 1OF 63 1OF H3 H18 H 0 1 N N N 10.815 24.985 -3.248 -3.504 2.439 -1.142 H3 1OF 64 1OF H5 H19 H 0 1 N N N 7.663 29.434 -10.374 5.619 -2.952 2.261 H5 1OF 65 1OF H7 H20 H 0 1 N N N 9.467 28.665 -13.487 6.066 -1.925 -1.430 H7 1OF 66 1OF HN41 H21 H 0 0 N N N 10.857 23.221 -17.404 10.959 3.093 -2.894 HN41 1OF 67 1OF HN42 H22 H 0 0 N N N 9.749 22.731 -16.309 9.748 3.555 -1.824 HN42 1OF 68 1OF HO11 H23 H 0 0 N N N 12.792 25.277 -2.122 -5.727 5.066 -1.092 HO11 1OF 69 1OF HO12 H24 H 0 0 N N N 15.159 24.253 -4.667 -7.354 3.945 -1.820 HO12 1OF 70 1OF HO5 H25 H 0 1 N N N 6.130 29.197 -12.776 8.135 -3.685 0.764 HO5 1OF 71 1OF HO6 H26 H 0 1 N N N 9.064 31.120 -11.178 6.271 -4.787 0.840 HO6 1OF 72 1OF H8 H27 H 0 1 N N N 5.719 28.299 -7.968 0.138 -2.116 2.758 H8 1OF 73 1OF H9 H28 H 0 1 N N N 6.359 27.527 -4.452 0.289 3.349 1.214 H9 1OF 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1OF N4 C14 SING N N 1 1OF N3 C14 DOUB Y N 2 1OF N3 C13 SING Y N 3 1OF C14 C11 SING Y N 4 1OF C13 N2 DOUB Y N 5 1OF C11 N1 SING Y N 6 1OF C11 C12 DOUB Y N 7 1OF N1 C10 DOUB Y N 8 1OF N2 C12 SING Y N 9 1OF C12 N SING Y N 10 1OF C10 N SING Y N 11 1OF N C9 SING N N 12 1OF O5 C8 SING N N 13 1OF C9 C8 SING N N 14 1OF C9 O4 SING N N 15 1OF C19 N6 SING N N 16 1OF C19 C18 DOUB N N 17 1OF C8 C7 SING N N 18 1OF N6 C20 SING N N 19 1OF O6 C7 SING N N 20 1OF O4 C6 SING N N 21 1OF C18 C17 SING N N 22 1OF C7 C6 SING N N 23 1OF C6 C5 SING N N 24 1OF C20 O13 DOUB N N 25 1OF C20 C21 SING N N 26 1OF C17 C21 DOUB Y N 27 1OF C17 C16 SING Y N 28 1OF C21 C22 SING Y N 29 1OF C5 O3 SING N N 30 1OF O3 P1 SING N N 31 1OF C16 C15 DOUB Y N 32 1OF C22 N5 DOUB Y N 33 1OF O2 P1 DOUB N N 34 1OF P1 O7 SING N N 35 1OF P1 O1 SING N N 36 1OF C15 N5 SING Y N 37 1OF N5 C SING N N 38 1OF O1 P SING N N 39 1OF C C1 SING N N 40 1OF C O10 SING N N 41 1OF P O8 DOUB N N 42 1OF P O9 SING N N 43 1OF P O SING N N 44 1OF C1 O12 SING N N 45 1OF C1 C2 SING N N 46 1OF O10 C3 SING N N 47 1OF C4 O SING N N 48 1OF C4 C3 SING N N 49 1OF C3 C2 SING N N 50 1OF C2 O11 SING N N 51 1OF C8 H6 SING N N 52 1OF C5 H52 SING N N 53 1OF C5 H51 SING N N 54 1OF C6 H4 SING N N 55 1OF N6 HN6 SING N N 56 1OF C2 H2 SING N N 57 1OF C4 H42 SING N N 58 1OF C4 H41 SING N N 59 1OF C H SING N N 60 1OF C1 H1 SING N N 61 1OF C10 H10 SING N N 62 1OF C13 H13 SING N N 63 1OF C15 H15 SING N N 64 1OF C16 H16 SING N N 65 1OF C18 H18 SING N N 66 1OF C19 H19 SING N N 67 1OF C22 H22 SING N N 68 1OF C3 H3 SING N N 69 1OF C7 H5 SING N N 70 1OF C9 H7 SING N N 71 1OF N4 HN41 SING N N 72 1OF N4 HN42 SING N N 73 1OF O11 HO11 SING N N 74 1OF O12 HO12 SING N N 75 1OF O5 HO5 SING N N 76 1OF O6 HO6 SING N N 77 1OF O7 H8 SING N N 78 1OF O9 H9 SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1OF SMILES ACDLabs 12.01 "O=C1NC=Cc2cc[n+](cc21)C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c(N)ncnc43)C(O)C2O)C(O)C1O" 1OF InChI InChI 1.03 "InChI=1S/C23H27N7O14P2/c24-19-14-20(27-8-26-19)30(9-28-14)23-18(34)16(32)13(43-23)7-41-46(38,39)44-45(36,37)40-6-12-15(31)17(33)22(42-12)29-4-2-10-1-3-25-21(35)11(10)5-29/h1-5,8-9,12-13,15-18,22-23,31-34H,6-7H2,(H4,24,26,27,36,37,38,39)/p+1/t12-,13-,15-,16-,17-,18-,22-,23-/m1/s1" 1OF InChIKey InChI 1.03 HTQFBBFBGDSFCE-BSLNIGMPSA-O 1OF SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)[n+]5ccc6C=CNC(=O)c6c5)[C@@H](O)[C@H]3O" 1OF SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)[n+]5ccc6C=CNC(=O)c6c5)[CH](O)[CH]3O" 1OF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c[n+](cc2c1C=CNC2=O)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O" 1OF SMILES "OpenEye OEToolkits" 2.0.7 "c1c[n+](cc2c1C=CNC2=O)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1OF "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-8-oxo-7,8-dihydro-2,7-naphthyridin-2-ium (non-preferred name)" 1OF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(8-oxidanylidene-7~{H}-2,7-naphthyridin-2-ium-2-yl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1OF "Create component" 2021-06-23 RCSB 1OF "Modify aromatic_flag" 2022-03-03 RCSB 1OF "Initial release" 2022-03-23 RCSB ##