data_1S4 # _chem_comp.id 1S4 _chem_comp.name "alpha-muramic acid" _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C9 H17 N O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "muramic acid; 2-amino-3-O-[(1R)-1-carboxyethyl]-2-deoxy-alpha-D-glucopyranose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-05-15 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 251.234 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1S4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4KNL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 1S4 "muramic acid" PDB ? 2 1S4 "2-amino-3-O-[(1R)-1-carboxyethyl]-2-deoxy-alpha-D-glucopyranose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1S4 N2 N2 N 0 1 N N N 7.792 -19.580 76.984 0.859 -2.245 -0.092 N2 1S4 1 1S4 C2 C2 C 0 1 N N R 8.555 -20.832 76.976 -0.183 -1.319 -0.556 C2 1S4 2 1S4 C1 C1 C 0 1 N N S 9.237 -21.134 78.296 -1.559 -1.855 -0.155 C1 1S4 3 1S4 O1 O1 O 0 1 N Y N 8.304 -21.373 79.293 -1.609 -2.028 1.263 O1 1S4 4 1S4 O5 O5 O 0 1 N N N 10.089 -22.240 78.193 -2.567 -0.924 -0.556 O5 1S4 5 1S4 C5 C5 C 0 1 N N R 9.427 -23.420 77.900 -2.447 0.364 0.052 C5 1S4 6 1S4 C6 C6 C 0 1 N N N 10.444 -24.584 77.895 -3.589 1.263 -0.427 C6 1S4 7 1S4 O6 O6 O 0 1 N N N 10.518 -25.154 79.163 -4.834 0.740 0.039 O6 1S4 8 1S4 C4 C4 C 0 1 N N S 8.587 -23.300 76.612 -1.106 0.989 -0.341 C4 1S4 9 1S4 O4 O4 O 0 1 N N N 7.770 -24.403 76.392 -0.958 2.252 0.310 O4 1S4 10 1S4 C3 C3 C 0 1 N N R 7.715 -22.049 76.595 0.030 0.055 0.088 C3 1S4 11 1S4 O3 O3 O 0 1 N N N 7.093 -21.836 75.333 1.281 0.595 -0.340 O3 1S4 12 1S4 C7 CBR C 0 1 N N R 5.693 -21.689 75.204 2.381 0.255 0.507 C7 1S4 13 1S4 C9 CAE C 0 1 N N N 5.043 -23.035 75.303 2.532 1.318 1.597 C9 1S4 14 1S4 C8 CBN C 0 1 N N N 5.291 -21.060 73.885 3.645 0.193 -0.312 C8 1S4 15 1S4 O8 OAN O 0 1 N N N 4.340 -21.502 73.236 3.624 0.504 -1.479 O8 1S4 16 1S4 HN21 H4 H 0 0 N N N 8.394 -18.824 77.240 0.737 -3.160 -0.500 HN21 1S4 17 1S4 H2 H5 H 0 1 N N N 9.346 -20.737 76.217 -0.130 -1.225 -1.641 H2 1S4 18 1S4 H1 H6 H 0 1 N N N 9.833 -20.250 78.567 -1.734 -2.812 -0.645 H1 1S4 19 1S4 HO1 H7 H 0 1 N Y N 8.753 -21.560 80.109 -2.454 -2.366 1.589 HO1 1S4 20 1S4 H5 H8 H 0 1 N N N 8.718 -23.631 78.715 -2.496 0.261 1.136 H5 1S4 21 1S4 H61 H9 H 0 1 N N N 10.122 -25.347 77.171 -3.448 2.270 -0.034 H61 1S4 22 1S4 H62 H10 H 0 1 N N N 11.435 -24.201 77.609 -3.593 1.295 -1.517 H62 1S4 23 1S4 HO6 H11 H 0 1 N Y N 11.144 -25.868 79.154 -5.604 1.260 -0.228 HO6 1S4 24 1S4 H4 H12 H 0 1 N N N 9.296 -23.211 75.775 -1.072 1.130 -1.422 H4 1S4 25 1S4 HO4 H13 H 0 1 N Y N 8.296 -25.194 76.399 -1.648 2.893 0.087 HO4 1S4 26 1S4 H3 H14 H 0 1 N N N 6.937 -22.172 77.363 0.027 -0.047 1.173 H3 1S4 27 1S4 H7 H15 H 0 1 N N N 5.311 -21.056 76.019 2.198 -0.715 0.968 H7 1S4 28 1S4 H91 H16 H 0 1 N N N 5.323 -23.509 76.255 2.715 2.288 1.137 H91 1S4 29 1S4 H92 H17 H 0 1 N N N 3.950 -22.918 75.259 1.618 1.363 2.190 H92 1S4 30 1S4 H93 H18 H 0 1 N N N 5.378 -23.666 74.467 3.371 1.059 2.243 H93 1S4 31 1S4 O9 OXT O 0 1 N N N ? ? ? 4.793 -0.209 0.256 O9 1S4 32 1S4 HO9 HXT H 0 1 N N N ? ? ? 5.577 -0.233 -0.310 HO9 1S4 33 1S4 HN22 H2 H 0 0 N Y N 7.416 -19.413 76.073 1.780 -1.881 -0.288 HN22 1S4 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1S4 O8 C8 DOUB N N 1 1S4 C8 C7 SING N N 2 1S4 C7 C9 SING N N 3 1S4 C7 O3 SING N N 4 1S4 O3 C3 SING N N 5 1S4 O4 C4 SING N N 6 1S4 C3 C4 SING N N 7 1S4 C3 C2 SING N N 8 1S4 C4 C5 SING N N 9 1S4 C2 N2 SING N N 10 1S4 C2 C1 SING N N 11 1S4 C6 C5 SING N N 12 1S4 C6 O6 SING N N 13 1S4 C5 O5 SING N N 14 1S4 O5 C1 SING N N 15 1S4 C1 O1 SING N N 16 1S4 N2 HN21 SING N N 17 1S4 C2 H2 SING N N 18 1S4 C1 H1 SING N N 19 1S4 O1 HO1 SING N N 20 1S4 C5 H5 SING N N 21 1S4 C6 H61 SING N N 22 1S4 C6 H62 SING N N 23 1S4 O6 HO6 SING N N 24 1S4 C4 H4 SING N N 25 1S4 O4 HO4 SING N N 26 1S4 C3 H3 SING N N 27 1S4 C7 H7 SING N N 28 1S4 C9 H91 SING N N 29 1S4 C9 H92 SING N N 30 1S4 C9 H93 SING N N 31 1S4 C8 O9 SING N N 32 1S4 O9 HO9 SING N N 33 1S4 N2 HN22 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1S4 SMILES ACDLabs 12.01 "O=C(O)C(OC1C(O)C(OC(O)C1N)CO)C" 1S4 InChI InChI 1.03 "InChI=1S/C9H17NO7/c1-3(8(13)14)16-7-5(10)9(15)17-4(2-11)6(7)12/h3-7,9,11-12,15H,2,10H2,1H3,(H,13,14)/t3-,4-,5-,6-,7-,9+/m1/s1" 1S4 InChIKey InChI 1.03 MSFSPUZXLOGKHJ-GLPGPYIRSA-N 1S4 SMILES_CANONICAL CACTVS 3.370 "C[C@@H](O[C@@H]1[C@@H](N)[C@@H](O)O[C@H](CO)[C@H]1O)C(O)=O" 1S4 SMILES CACTVS 3.370 "C[CH](O[CH]1[CH](N)[CH](O)O[CH](CO)[CH]1O)C(O)=O" 1S4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H](C(=O)O)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O)CO)O)N" 1S4 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(=O)O)OC1C(C(OC(C1O)CO)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1S4 "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-3-O-[(1R)-1-carboxyethyl]-2-deoxy-alpha-D-glucopyranose" 1S4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[(2R,3S,4R,5R,6S)-5-azanyl-2-(hydroxymethyl)-3,6-bis(oxidanyl)oxan-4-yl]oxypropanoic acid" 1S4 "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Mur # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 1S4 "CARBOHYDRATE ISOMER" D PDB ? 1S4 "CARBOHYDRATE RING" pyranose PDB ? 1S4 "CARBOHYDRATE ANOMER" alpha PDB ? 1S4 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1S4 "Create component" 2013-05-15 RCSB 1S4 "Other modification" 2019-08-12 RCSB 1S4 "Other modification" 2019-12-19 RCSB 1S4 "Other modification" 2020-06-03 RCSB 1S4 "Other modification" 2020-06-10 RCSB 1S4 "Other modification" 2020-07-03 RCSB 1S4 "Modify atom id" 2020-07-17 RCSB 1S4 "Modify component atom id" 2020-07-17 RCSB 1S4 "Initial release" 2020-07-29 RCSB ##