data_1T1 # _chem_comp.id 1T1 _chem_comp.name "stearoyl adenylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H48 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5'-O-[(R)-hydroxy(octadecanoyloxy)phosphoryl]adenosine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-25 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 613.683 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1T1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7R7F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1T1 C15 C1 C 0 1 N N N -26.086 29.591 18.564 -0.722 -0.669 -0.440 C15 1T1 1 1T1 C17 C2 C 0 1 N N N -25.128 29.501 20.858 -3.204 -0.380 -0.445 C17 1T1 2 1T1 C20 C3 C 0 1 N N N -25.275 26.997 22.855 -6.988 -0.462 0.261 C20 1T1 3 1T1 C21 C4 C 0 1 N N N -24.667 25.971 23.796 -8.167 0.200 -0.455 C21 1T1 4 1T1 C22 C5 C 0 1 N N N -25.534 24.729 23.886 -9.469 -0.172 0.256 C22 1T1 5 1T1 C24 C6 C 0 1 N N N -24.498 22.444 24.267 -11.951 0.117 0.250 C24 1T1 6 1T1 C26 C7 C 0 1 N N N -24.769 20.005 24.829 -14.433 0.407 0.245 C26 1T1 7 1T1 C28 C8 C 0 1 N N N -25.096 17.811 25.969 -16.914 0.697 0.240 C28 1T1 8 1T1 C02 C9 C 0 1 Y N N -28.584 34.937 23.288 10.893 3.828 0.310 C02 1T1 9 1T1 C03 C10 C 0 1 Y N N -28.155 34.600 22.000 9.835 2.910 0.422 C03 1T1 10 1T1 C04 C11 C 0 1 Y N N -28.447 35.467 20.981 9.842 1.784 -0.419 C04 1T1 11 1T1 C06 C12 C 0 1 N N R -28.031 35.549 18.578 8.285 -0.189 -0.717 C06 1T1 12 1T1 C08 C13 C 0 1 N N R -26.554 35.045 16.675 6.623 -1.801 -0.674 C08 1T1 13 1T1 C09 C14 C 0 1 N N N -25.689 33.941 16.100 5.497 -2.237 0.267 C09 1T1 14 1T1 C14 C15 C 0 1 N N N -26.243 30.690 17.534 0.439 -1.321 0.266 C14 1T1 15 1T1 C16 C16 C 0 1 N N N -26.195 30.128 19.981 -2.025 -1.042 0.271 C16 1T1 16 1T1 C18 C17 C 0 1 N N N -25.516 29.434 22.325 -4.506 -0.752 0.266 C18 1T1 17 1T1 C19 C18 C 0 1 N N N -24.676 28.386 23.034 -5.685 -0.090 -0.450 C19 1T1 18 1T1 C23 C19 C 0 1 N N N -24.867 23.520 23.254 -10.648 0.490 -0.460 C23 1T1 19 1T1 C25 C20 C 0 1 N N N -25.430 21.235 24.222 -13.130 0.780 -0.465 C25 1T1 20 1T1 C27 C21 C 0 1 N N N -25.668 18.781 24.942 -15.612 1.069 -0.471 C27 1T1 21 1T1 C29 C22 C 0 1 N N N -25.630 16.389 25.848 -18.093 1.359 -0.476 C29 1T1 22 1T1 C30 C23 C 0 1 N N N -24.882 15.422 26.761 -19.396 0.987 0.235 C30 1T1 23 1T1 C31 C24 C 0 1 N N N -25.638 14.118 26.959 -20.575 1.649 -0.481 C31 1T1 24 1T1 C34 C25 C 0 1 N N S -25.870 35.606 17.628 7.931 -2.537 -0.307 C34 1T1 25 1T1 C36 C26 C 0 1 N N R -27.044 36.408 18.483 8.931 -1.398 0.008 C36 1T1 26 1T1 C38 C27 C 0 1 Y N N -27.360 33.793 20.187 8.066 1.746 0.887 C38 1T1 27 1T1 C41 C28 C 0 1 Y N N -29.506 36.863 22.460 11.809 2.516 -1.355 C41 1T1 28 1T1 N01 N1 N 0 1 N N N -28.323 34.088 24.417 10.944 4.951 1.115 N01 1T1 29 1T1 N05 N2 N 0 1 Y N N -27.949 34.929 19.879 8.714 1.070 -0.103 N05 1T1 30 1T1 N39 N3 N 0 1 Y N N -27.478 33.576 21.477 8.725 2.825 1.194 N39 1T1 31 1T1 N40 N4 N 0 1 Y N N -29.119 36.582 21.244 10.839 1.630 -1.284 N40 1T1 32 1T1 N42 N5 N 0 1 Y N N -29.243 36.056 23.462 11.847 3.589 -0.585 N42 1T1 33 1T1 O07 O1 O 0 1 N N N -27.794 34.486 17.439 6.869 -0.393 -0.523 O07 1T1 34 1T1 O10 O2 O 0 1 N N N -26.506 33.012 15.481 4.272 -1.628 -0.143 O10 1T1 35 1T1 O12 O3 O 0 1 N N N -26.593 30.910 14.020 2.596 -3.316 0.702 O12 1T1 36 1T1 O13 O4 O 0 1 N N N -25.490 30.649 16.344 1.689 -1.134 -0.186 O13 1T1 37 1T1 O32 O5 O 0 1 N N N -27.002 31.549 17.793 0.245 -2.013 1.237 O32 1T1 38 1T1 O33 O6 O 0 1 N N N -24.443 31.982 14.411 2.968 -1.253 2.109 O33 1T1 39 1T1 O35 O7 O 0 1 N N N -24.906 36.473 17.049 8.393 -3.317 -1.411 O35 1T1 40 1T1 O37 O8 O 0 1 N N N -27.455 37.578 17.777 10.221 -1.687 -0.534 O37 1T1 41 1T1 P11 P1 P 0 1 N N N -25.758 31.629 15.041 2.875 -1.865 0.622 P11 1T1 42 1T1 H1 H1 H 0 1 N N N -26.874 28.840 18.406 -0.595 0.413 -0.423 H1 1T1 43 1T1 H2 H2 H 0 1 N N N -25.100 29.121 18.436 -0.760 -1.015 -1.473 H2 1T1 44 1T1 H3 H3 H 0 1 N N N -24.939 28.478 20.500 -3.077 0.703 -0.428 H3 1T1 45 1T1 H4 H4 H 0 1 N N N -24.208 30.097 20.768 -3.242 -0.725 -1.478 H4 1T1 46 1T1 H5 H5 H 0 1 N N N -26.357 27.053 23.047 -6.950 -0.117 1.294 H5 1T1 47 1T1 H6 H6 H 0 1 N N N -25.103 26.670 21.819 -7.114 -1.545 0.244 H6 1T1 48 1T1 H7 H7 H 0 1 N N N -23.672 25.688 23.423 -8.040 1.283 -0.438 H7 1T1 49 1T1 H8 H8 H 0 1 N N N -24.571 26.415 24.798 -8.205 -0.145 -1.488 H8 1T1 50 1T1 H9 H9 H 0 1 N N N -26.485 24.922 23.367 -9.596 -1.255 0.239 H9 1T1 51 1T1 H10 H10 H 0 1 N N N -25.733 24.511 24.946 -9.431 0.173 1.289 H10 1T1 52 1T1 H11 H11 H 0 1 N N N -23.473 22.104 24.059 -12.077 -0.965 0.234 H11 1T1 53 1T1 H12 H12 H 0 1 N N N -24.541 22.882 25.275 -11.913 0.463 1.283 H12 1T1 54 1T1 H13 H13 H 0 1 N N N -23.905 19.737 24.202 -14.559 -0.675 0.228 H13 1T1 55 1T1 H14 H14 H 0 1 N N N -24.422 20.268 25.839 -14.394 0.753 1.278 H14 1T1 56 1T1 H15 H15 H 0 1 N N N -24.003 17.781 25.845 -17.041 -0.385 0.223 H15 1T1 57 1T1 H16 H16 H 0 1 N N N -25.341 18.187 26.973 -16.876 1.043 1.273 H16 1T1 58 1T1 H17 H17 H 0 1 N N N -29.017 36.014 18.431 8.533 -0.202 -1.778 H17 1T1 59 1T1 H18 H18 H 0 1 N N N -26.879 35.736 15.883 6.352 -2.022 -1.706 H18 1T1 60 1T1 H19 H19 H 0 1 N N N -25.123 33.455 16.909 5.394 -3.321 0.232 H19 1T1 61 1T1 H20 H20 H 0 1 N N N -24.988 34.365 15.366 5.734 -1.927 1.285 H20 1T1 62 1T1 H21 H21 H 0 1 N N N -26.060 31.220 19.968 -2.151 -2.124 0.254 H21 1T1 63 1T1 H22 H22 H 0 1 N N N -27.188 29.886 20.387 -1.986 -0.696 1.304 H22 1T1 64 1T1 H23 H23 H 0 1 N N N -25.346 30.415 22.792 -4.633 -1.834 0.249 H23 1T1 65 1T1 H24 H24 H 0 1 N N N -26.580 29.167 22.409 -4.468 -0.406 1.299 H24 1T1 66 1T1 H25 H25 H 0 1 N N N -23.659 28.396 22.615 -5.723 -0.435 -1.483 H25 1T1 67 1T1 H26 H26 H 0 1 N N N -24.633 28.624 24.107 -5.559 0.993 -0.433 H26 1T1 68 1T1 H27 H27 H 0 1 N N N -25.558 23.085 22.517 -10.522 1.572 -0.444 H27 1T1 69 1T1 H28 H28 H 0 1 N N N -23.950 23.852 22.746 -10.687 0.145 -1.493 H28 1T1 70 1T1 H29 H29 H 0 1 N N N -26.345 21.466 24.788 -13.004 1.862 -0.449 H29 1T1 71 1T1 H30 H30 H 0 1 N N N -25.690 21.022 23.175 -13.168 0.434 -1.499 H30 1T1 72 1T1 H31 H31 H 0 1 N N N -26.674 19.095 25.257 -15.485 2.152 -0.454 H31 1T1 73 1T1 H32 H32 H 0 1 N N N -25.730 18.282 23.964 -15.650 0.724 -1.504 H32 1T1 74 1T1 H33 H33 H 0 1 N N N -26.695 16.385 26.121 -17.967 2.442 -0.459 H33 1T1 75 1T1 H34 H34 H 0 1 N N N -25.517 16.054 24.806 -18.131 1.014 -1.509 H34 1T1 76 1T1 H35 H35 H 0 1 N N N -23.902 15.199 26.314 -19.522 -0.096 0.218 H35 1T1 77 1T1 H36 H36 H 0 1 N N N -24.738 15.900 27.741 -19.358 1.332 1.268 H36 1T1 78 1T1 H37 H37 H 0 1 N N N -25.061 13.456 27.622 -20.613 1.304 -1.514 H37 1T1 79 1T1 H38 H38 H 0 1 N N N -26.618 14.328 27.413 -21.503 1.384 0.025 H38 1T1 80 1T1 H39 H39 H 0 1 N N N -25.782 13.627 25.986 -20.448 2.732 -0.464 H39 1T1 81 1T1 H40 H40 H 0 1 N N N -25.394 34.880 18.304 7.781 -3.166 0.571 H40 1T1 82 1T1 H41 H41 H 0 1 N N N -26.620 36.674 19.463 8.992 -1.219 1.082 H41 1T1 83 1T1 H42 H42 H 0 1 N N N -26.858 33.141 19.488 7.141 1.433 1.349 H42 1T1 84 1T1 H43 H43 H 0 1 N N N -30.052 37.776 22.644 12.604 2.361 -2.069 H43 1T1 85 1T1 H44 H44 H 0 1 N N N -28.710 34.501 25.242 11.682 5.576 1.031 H44 1T1 86 1T1 H45 H45 H 0 1 N N N -28.742 33.193 24.264 10.243 5.115 1.765 H45 1T1 87 1T1 H46 H46 H 0 1 N N N -24.429 31.675 13.512 3.149 -0.304 2.133 H46 1T1 88 1T1 H47 H47 H 0 1 N N N -24.400 36.889 17.737 9.212 -3.801 -1.236 H47 1T1 89 1T1 H48 H48 H 0 1 N N N -28.127 38.029 18.275 10.627 -2.488 -0.175 H48 1T1 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1T1 O12 P11 DOUB N N 1 1T1 O33 P11 SING N N 2 1T1 P11 O10 SING N N 3 1T1 P11 O13 SING N N 4 1T1 O10 C09 SING N N 5 1T1 C09 C08 SING N N 6 1T1 O13 C14 SING N N 7 1T1 C08 O07 SING N N 8 1T1 C08 C34 SING N N 9 1T1 O35 C34 SING N N 10 1T1 O07 C06 SING N N 11 1T1 C14 O32 DOUB N N 12 1T1 C14 C15 SING N N 13 1T1 C34 C36 SING N N 14 1T1 O37 C36 SING N N 15 1T1 C36 C06 SING N N 16 1T1 C15 C16 SING N N 17 1T1 C06 N05 SING N N 18 1T1 N05 C38 SING Y N 19 1T1 N05 C04 SING Y N 20 1T1 C16 C17 SING N N 21 1T1 C38 N39 DOUB Y N 22 1T1 C17 C18 SING N N 23 1T1 C04 N40 DOUB Y N 24 1T1 C04 C03 SING Y N 25 1T1 N40 C41 SING Y N 26 1T1 N39 C03 SING Y N 27 1T1 C03 C02 DOUB Y N 28 1T1 C18 C19 SING N N 29 1T1 C41 N42 DOUB Y N 30 1T1 C20 C19 SING N N 31 1T1 C20 C21 SING N N 32 1T1 C23 C22 SING N N 33 1T1 C23 C24 SING N N 34 1T1 C02 N42 SING Y N 35 1T1 C02 N01 SING N N 36 1T1 C21 C22 SING N N 37 1T1 C25 C24 SING N N 38 1T1 C25 C26 SING N N 39 1T1 C26 C27 SING N N 40 1T1 C27 C28 SING N N 41 1T1 C29 C28 SING N N 42 1T1 C29 C30 SING N N 43 1T1 C30 C31 SING N N 44 1T1 C15 H1 SING N N 45 1T1 C15 H2 SING N N 46 1T1 C17 H3 SING N N 47 1T1 C17 H4 SING N N 48 1T1 C20 H5 SING N N 49 1T1 C20 H6 SING N N 50 1T1 C21 H7 SING N N 51 1T1 C21 H8 SING N N 52 1T1 C22 H9 SING N N 53 1T1 C22 H10 SING N N 54 1T1 C24 H11 SING N N 55 1T1 C24 H12 SING N N 56 1T1 C26 H13 SING N N 57 1T1 C26 H14 SING N N 58 1T1 C28 H15 SING N N 59 1T1 C28 H16 SING N N 60 1T1 C06 H17 SING N N 61 1T1 C08 H18 SING N N 62 1T1 C09 H19 SING N N 63 1T1 C09 H20 SING N N 64 1T1 C16 H21 SING N N 65 1T1 C16 H22 SING N N 66 1T1 C18 H23 SING N N 67 1T1 C18 H24 SING N N 68 1T1 C19 H25 SING N N 69 1T1 C19 H26 SING N N 70 1T1 C23 H27 SING N N 71 1T1 C23 H28 SING N N 72 1T1 C25 H29 SING N N 73 1T1 C25 H30 SING N N 74 1T1 C27 H31 SING N N 75 1T1 C27 H32 SING N N 76 1T1 C29 H33 SING N N 77 1T1 C29 H34 SING N N 78 1T1 C30 H35 SING N N 79 1T1 C30 H36 SING N N 80 1T1 C31 H37 SING N N 81 1T1 C31 H38 SING N N 82 1T1 C31 H39 SING N N 83 1T1 C34 H40 SING N N 84 1T1 C36 H41 SING N N 85 1T1 C38 H42 SING N N 86 1T1 C41 H43 SING N N 87 1T1 N01 H44 SING N N 88 1T1 N01 H45 SING N N 89 1T1 O33 H46 SING N N 90 1T1 O35 H47 SING N N 91 1T1 O37 H48 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1T1 SMILES ACDLabs 12.01 "CCCCCCCCCCCCCCCCCC(=O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" 1T1 InChI InChI 1.03 "InChI=1S/C28H48N5O8P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-22(34)41-42(37,38)39-18-21-24(35)25(36)28(40-21)33-20-32-23-26(29)30-19-31-27(23)33/h19-21,24-25,28,35-36H,2-18H2,1H3,(H,37,38)(H2,29,30,31)/t21-,24-,25-,28-/m1/s1" 1T1 InChIKey InChI 1.03 SWOLRYFPKWBFHG-VGSCBBJJSA-N 1T1 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCCCC(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 1T1 SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCCCC(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 1T1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCCCC(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 1T1 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCCCC(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1T1 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-hydroxy(octadecanoyloxy)phosphoryl]adenosine" 1T1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] octadecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1T1 "Create component" 2021-06-25 RCSB 1T1 "Initial release" 2022-07-06 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 1T1 _pdbx_chem_comp_synonyms.name "5'-O-[(R)-hydroxy(octadecanoyloxy)phosphoryl]adenosine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #