data_1TF # _chem_comp.id 1TF _chem_comp.name "palmitoyl adenylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H44 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5'-O-[(R)-(hexadecanoyloxy)(hydroxy)phosphoryl]adenosine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-25 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 585.630 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1TF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7R7G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1TF C15 C1 C 0 1 N N N -25.542 29.924 18.408 -1.693 -0.578 -0.445 C15 1TF 1 1TF C17 C2 C 0 1 N N N -25.327 29.710 20.897 -4.169 -0.245 -0.457 C17 1TF 2 1TF C20 C3 C 0 1 N N N -25.636 27.340 23.011 -7.956 -0.257 0.243 C20 1TF 3 1TF C21 C4 C 0 1 N N N -24.829 26.355 23.840 -9.122 0.422 -0.479 C21 1TF 4 1TF C22 C5 C 0 1 N N N -25.693 25.241 24.408 -10.432 0.076 0.231 C22 1TF 5 1TF C24 C6 C 0 1 N N N -24.881 22.853 24.309 -12.908 0.410 0.220 C24 1TF 6 1TF C26 C7 C 0 1 N N N -24.915 20.380 24.917 -15.384 0.743 0.209 C26 1TF 7 1TF C28 C8 C 0 1 N N N -25.439 18.343 26.328 -17.860 1.077 0.198 C28 1TF 8 1TF C02 C9 C 0 1 Y N N -28.796 35.178 23.382 9.998 3.717 0.301 C02 1TF 9 1TF C03 C10 C 0 1 Y N N -28.379 34.777 22.105 8.924 2.819 0.416 C03 1TF 10 1TF C04 C11 C 0 1 Y N N -28.733 35.555 21.033 8.912 1.689 -0.419 C04 1TF 11 1TF C06 C12 C 0 1 N N R -28.367 35.495 18.590 7.321 -0.259 -0.709 C06 1TF 12 1TF C08 C13 C 0 1 N N R -26.772 35.103 16.953 5.631 -1.841 -0.660 C08 1TF 13 1TF C09 C14 C 0 1 N N N -25.940 33.940 16.474 4.496 -2.251 0.281 C09 1TF 14 1TF C14 C15 C 0 1 N N N -26.325 30.638 17.325 -0.545 -1.247 0.265 C14 1TF 15 1TF C16 C16 C 0 1 N N N -26.278 29.970 19.740 -3.003 -0.924 0.265 C16 1TF 16 1TF C18 C17 C 0 1 N N N -25.988 29.700 22.264 -5.479 -0.590 0.254 C18 1TF 17 1TF C19 C18 C 0 1 N N N -25.204 28.789 23.194 -6.645 0.089 -0.468 C19 1TF 18 1TF C23 C19 C 0 1 N N N -25.625 23.964 23.586 -11.598 0.756 -0.490 C23 1TF 19 1TF C25 C20 C 0 1 N N N -25.663 21.545 24.287 -14.074 1.089 -0.501 C25 1TF 20 1TF C27 C21 C 0 1 N N N -25.807 19.157 25.093 -16.550 1.422 -0.512 C27 1TF 21 1TF C29 C22 C 0 1 N N N -25.061 16.904 26.002 -19.026 1.756 -0.523 C29 1TF 22 1TF C32 C23 C 0 1 N N S -26.135 35.728 17.874 6.925 -2.597 -0.287 C32 1TF 23 1TF C34 C24 C 0 1 N N R -27.258 36.558 18.447 7.944 -1.474 0.023 C34 1TF 24 1TF C36 C25 C 0 1 Y N N -27.570 33.880 20.336 7.133 1.689 0.884 C36 1TF 25 1TF C39 C26 C 0 1 Y N N -29.830 37.001 22.443 10.894 2.381 -1.355 C39 1TF 26 1TF N01 N1 N 0 1 N N N -28.453 34.407 24.551 10.068 4.844 1.101 N01 1TF 27 1TF N05 N2 N 0 1 Y N N -28.224 34.962 19.961 7.771 0.996 -0.101 N05 1TF 28 1TF N37 N3 N 0 1 Y N N -27.660 33.750 21.640 7.811 2.758 1.186 N37 1TF 29 1TF N38 N4 N 0 1 Y N N -29.458 36.651 21.237 9.908 1.512 -1.281 N38 1TF 30 1TF N40 N5 N 0 1 Y N N -29.509 36.278 23.496 10.949 3.457 -0.591 N40 1TF 31 1TF O07 O1 O 0 1 N N N -28.109 34.610 17.705 5.901 -0.436 -0.516 O07 1TF 32 1TF O10 O2 O 0 1 N N N -26.738 33.153 15.646 3.282 -1.623 -0.135 O10 1TF 33 1TF O12 O3 O 0 1 N N N -26.933 31.372 13.821 1.576 -3.277 0.716 O12 1TF 34 1TF O13 O4 O 0 1 N N N -25.908 30.571 15.984 0.709 -1.084 -0.184 O13 1TF 35 1TF O30 O5 O 0 1 N N N -27.287 31.235 17.651 -0.753 -1.930 1.240 O30 1TF 36 1TF O31 O6 O 0 1 N N N -24.704 32.234 14.395 1.981 -1.214 2.113 O31 1TF 37 1TF O33 O7 O 0 1 N N N -25.062 36.571 17.268 7.375 -3.391 -1.386 O33 1TF 38 1TF O35 O8 O 0 1 N N N -27.648 37.515 17.572 9.230 -1.789 -0.515 O35 1TF 39 1TF P11 P1 P 0 1 N N N -26.048 31.845 14.935 1.881 -1.831 0.629 P11 1TF 40 1TF H1 H1 H 0 1 N N N -25.398 28.874 18.114 -1.548 0.502 -0.434 H1 1TF 41 1TF H2 H2 H 0 1 N N N -24.562 30.411 18.522 -1.736 -0.928 -1.477 H2 1TF 42 1TF H3 H3 H 0 1 N N N -24.852 28.731 20.738 -4.024 0.835 -0.445 H3 1TF 43 1TF H4 H4 H 0 1 N N N -24.558 30.496 20.893 -4.212 -0.595 -1.488 H4 1TF 44 1TF H5 H5 H 0 1 N N N -26.694 27.253 23.300 -7.913 0.093 1.274 H5 1TF 45 1TF H6 H6 H 0 1 N N N -25.523 27.075 21.949 -8.101 -1.337 0.231 H6 1TF 46 1TF H7 H7 H 0 1 N N N -24.050 25.910 23.203 -8.976 1.502 -0.468 H7 1TF 47 1TF H8 H8 H 0 1 N N N -24.356 26.896 24.673 -9.164 0.072 -1.510 H8 1TF 48 1TF H9 H9 H 0 1 N N N -26.737 25.586 24.436 -10.577 -1.004 0.220 H9 1TF 49 1TF H10 H10 H 0 1 N N N -25.353 25.019 25.430 -10.389 0.427 1.263 H10 1TF 50 1TF H11 H11 H 0 1 N N N -23.909 22.696 23.818 -13.053 -0.670 0.209 H11 1TF 51 1TF H12 H12 H 0 1 N N N -24.719 23.154 25.355 -12.865 0.760 1.252 H12 1TF 52 1TF H13 H13 H 0 1 N N N -24.067 20.111 24.270 -15.529 -0.337 0.198 H13 1TF 53 1TF H14 H14 H 0 1 N N N -24.540 20.691 25.903 -15.341 1.094 1.241 H14 1TF 54 1TF H15 H15 H 0 1 N N N -24.584 18.826 26.824 -18.006 -0.004 0.187 H15 1TF 55 1TF H16 H16 H 0 1 N N N -26.301 18.333 27.011 -17.817 1.427 1.229 H16 1TF 56 1TF H17 H17 H 0 1 N N N -29.350 35.972 18.465 7.570 -0.281 -1.770 H17 1TF 57 1TF H18 H18 H 0 1 N N N -27.059 35.738 16.102 5.358 -2.062 -1.692 H18 1TF 58 1TF H19 H19 H 0 1 N N N -25.596 33.347 17.335 4.374 -3.334 0.251 H19 1TF 59 1TF H20 H20 H 0 1 N N N -25.070 34.310 15.912 4.737 -1.940 1.297 H20 1TF 60 1TF H21 H21 H 0 1 N N N -26.734 30.963 19.865 -3.149 -2.004 0.254 H21 1TF 61 1TF H22 H22 H 0 1 N N N -27.066 29.202 19.742 -2.961 -0.574 1.296 H22 1TF 62 1TF H23 H23 H 0 1 N N N -26.000 30.721 22.674 -5.625 -1.671 0.243 H23 1TF 63 1TF H24 H24 H 0 1 N N N -27.020 29.330 22.171 -5.437 -0.240 1.285 H24 1TF 64 1TF H25 H25 H 0 1 N N N -24.131 28.878 22.968 -6.688 -0.262 -1.499 H25 1TF 65 1TF H26 H26 H 0 1 N N N -25.386 29.092 24.236 -6.500 1.169 -0.456 H26 1TF 66 1TF H27 H27 H 0 1 N N N -25.107 24.179 22.640 -11.452 1.836 -0.479 H27 1TF 67 1TF H28 H28 H 0 1 N N N -26.650 23.624 23.374 -11.640 0.405 -1.521 H28 1TF 68 1TF H29 H29 H 0 1 N N N -26.604 21.693 24.837 -13.928 2.169 -0.490 H29 1TF 69 1TF H30 H30 H 0 1 N N N -25.886 21.290 23.240 -14.116 0.739 -1.533 H30 1TF 70 1TF H31 H31 H 0 1 N N N -26.851 19.492 25.188 -16.404 2.503 -0.501 H31 1TF 71 1TF H32 H32 H 0 1 N N N -25.707 18.516 24.205 -16.592 1.072 -1.544 H32 1TF 72 1TF H33 H33 H 0 1 N N N -24.807 16.372 26.931 -19.068 1.406 -1.555 H33 1TF 73 1TF H34 H34 H 0 1 N N N -25.910 16.404 25.513 -19.959 1.510 -0.017 H34 1TF 74 1TF H35 H35 H 0 1 N N N -24.193 16.897 25.327 -18.881 2.836 -0.512 H35 1TF 75 1TF H36 H36 H 0 1 N N N -25.714 35.072 18.650 6.763 -3.219 0.593 H36 1TF 76 1TF H37 H37 H 0 1 N N N -26.983 36.958 19.434 8.007 -1.291 1.096 H37 1TF 77 1TF H38 H38 H 0 1 N N N -27.044 33.207 19.675 6.203 1.395 1.346 H38 1TF 78 1TF H39 H39 H 0 1 N N N -30.412 37.901 22.577 11.687 2.208 -2.067 H39 1TF 79 1TF H40 H40 H 0 1 N N N -28.834 34.846 25.364 10.816 5.455 1.014 H40 1TF 80 1TF H41 H41 H 0 1 N N N -28.829 33.484 24.464 9.368 5.023 1.748 H41 1TF 81 1TF H42 H42 H 0 1 N N N -24.689 32.100 13.455 2.179 -0.267 2.132 H42 1TF 82 1TF H43 H43 H 0 1 N N N -24.594 37.031 17.955 8.185 -3.888 -1.207 H43 1TF 83 1TF H44 H44 H 0 1 N N N -28.354 38.024 17.953 9.622 -2.595 -0.151 H44 1TF 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1TF O12 P11 DOUB N N 1 1TF O31 P11 SING N N 2 1TF P11 O10 SING N N 3 1TF P11 O13 SING N N 4 1TF O10 C09 SING N N 5 1TF O13 C14 SING N N 6 1TF C09 C08 SING N N 7 1TF C08 O07 SING N N 8 1TF C08 C32 SING N N 9 1TF O33 C32 SING N N 10 1TF C14 O30 DOUB N N 11 1TF C14 C15 SING N N 12 1TF O35 C34 SING N N 13 1TF O07 C06 SING N N 14 1TF C32 C34 SING N N 15 1TF C15 C16 SING N N 16 1TF C34 C06 SING N N 17 1TF C06 N05 SING N N 18 1TF C16 C17 SING N N 19 1TF N05 C36 SING Y N 20 1TF N05 C04 SING Y N 21 1TF C36 N37 DOUB Y N 22 1TF C17 C18 SING N N 23 1TF C04 N38 DOUB Y N 24 1TF C04 C03 SING Y N 25 1TF N38 C39 SING Y N 26 1TF N37 C03 SING Y N 27 1TF C03 C02 DOUB Y N 28 1TF C18 C19 SING N N 29 1TF C39 N40 DOUB Y N 30 1TF C20 C19 SING N N 31 1TF C20 C21 SING N N 32 1TF C02 N40 SING Y N 33 1TF C02 N01 SING N N 34 1TF C23 C24 SING N N 35 1TF C23 C22 SING N N 36 1TF C21 C22 SING N N 37 1TF C25 C24 SING N N 38 1TF C25 C26 SING N N 39 1TF C26 C27 SING N N 40 1TF C27 C28 SING N N 41 1TF C29 C28 SING N N 42 1TF C15 H1 SING N N 43 1TF C15 H2 SING N N 44 1TF C17 H3 SING N N 45 1TF C17 H4 SING N N 46 1TF C20 H5 SING N N 47 1TF C20 H6 SING N N 48 1TF C21 H7 SING N N 49 1TF C21 H8 SING N N 50 1TF C22 H9 SING N N 51 1TF C22 H10 SING N N 52 1TF C24 H11 SING N N 53 1TF C24 H12 SING N N 54 1TF C26 H13 SING N N 55 1TF C26 H14 SING N N 56 1TF C28 H15 SING N N 57 1TF C28 H16 SING N N 58 1TF C06 H17 SING N N 59 1TF C08 H18 SING N N 60 1TF C09 H19 SING N N 61 1TF C09 H20 SING N N 62 1TF C16 H21 SING N N 63 1TF C16 H22 SING N N 64 1TF C18 H23 SING N N 65 1TF C18 H24 SING N N 66 1TF C19 H25 SING N N 67 1TF C19 H26 SING N N 68 1TF C23 H27 SING N N 69 1TF C23 H28 SING N N 70 1TF C25 H29 SING N N 71 1TF C25 H30 SING N N 72 1TF C27 H31 SING N N 73 1TF C27 H32 SING N N 74 1TF C29 H33 SING N N 75 1TF C29 H34 SING N N 76 1TF C29 H35 SING N N 77 1TF C32 H36 SING N N 78 1TF C34 H37 SING N N 79 1TF C36 H38 SING N N 80 1TF C39 H39 SING N N 81 1TF N01 H40 SING N N 82 1TF N01 H41 SING N N 83 1TF O31 H42 SING N N 84 1TF O33 H43 SING N N 85 1TF O35 H44 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1TF SMILES ACDLabs 12.01 "CCCCCCCCCCCCCCCC(=O)OP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O" 1TF InChI InChI 1.03 "InChI=1S/C26H44N5O8P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-20(32)39-40(35,36)37-16-19-22(33)23(34)26(38-19)31-18-30-21-24(27)28-17-29-25(21)31/h17-19,22-23,26,33-34H,2-16H2,1H3,(H,35,36)(H2,27,28,29)/t19-,22-,23-,26-/m1/s1" 1TF InChIKey InChI 1.03 CMRDSXPYXCUXMI-VJUOEERUSA-N 1TF SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 1TF SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 1TF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" 1TF SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1TF "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-(hexadecanoyloxy)(hydroxy)phosphoryl]adenosine" 1TF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hexadecanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1TF "Create component" 2021-06-25 RCSB 1TF "Initial release" 2022-07-06 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 1TF _pdbx_chem_comp_synonyms.name "5'-O-[(R)-(hexadecanoyloxy)(hydroxy)phosphoryl]adenosine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #